Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CRIP2-205ENST00000548309 1893 ntTSL 1 (best)18.54■□□□□ 0.562e-7■■■■■ 32.4
SMNDC1O75940 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.46■□□□□ 0.556e-24■■■■■ 32.4
SMNDC1O75940 CRIP2-207ENST00000548989 1976 ntTSL 218.22■□□□□ 0.512e-7■■■■■ 32.4
SMNDC1O75940 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.12■□□□□ 0.492e-7■■■■■ 32.4
SMNDC1O75940 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.94■□□□□ 0.462e-7■■■■■ 32.4
SMNDC1O75940 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.432e-6■■■■■ 32.4
SMNDC1O75940 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.392e-7■■■■■ 32.4
SMNDC1O75940 TERT-204ENST00000484238 2422 ntTSL 517.26■□□□□ 0.352e-6■■■■■ 32.4
SMNDC1O75940 CRIP2-203ENST00000538259 991 ntTSL 217.25■□□□□ 0.352e-7■■■■■ 32.4
SMNDC1O75940 SCARB1-205ENST00000538291 5527 ntTSL 517.07■□□□□ 0.326e-24■■■■■ 32.4
SMNDC1O75940 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.01■□□□□ 0.316e-24■■■■■ 32.4
SMNDC1O75940 MGAT4B-203ENST00000518168 1013 ntTSL 216.92■□□□□ 0.32e-7■■■■■ 32.4
SMNDC1O75940 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.91■□□□□ 0.32e-7■■■■■ 32.4
SMNDC1O75940 MGAT4B-217ENST00000521305 1213 ntTSL 516.69■□□□□ 0.262e-7■■■■■ 32.4
SMNDC1O75940 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.122e-6■■■■■ 32.4
SMNDC1O75940 MGAT4B-222ENST00000523329 543 ntTSL 315.16■□□□□ 0.022e-7■■■■■ 32.4
SMNDC1O75940 PLEC-209ENST00000526416 583 ntTSL 315.08■□□□□ 02e-7■■■■■ 32.4
SMNDC1O75940 CRIP2-206ENST00000548923 582 ntTSL 314.01□□□□□ -0.172e-7■■■■■ 32.4
SMNDC1O75940 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.182e-7■■■■■ 32.4
SMNDC1O75940 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.27□□□□□ -0.292e-7■■■■■ 32.4
SMNDC1O75940 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.292e-7■■■■■ 32.4
SMNDC1O75940 SCARB1-204ENST00000535005 1845 ntTSL 1 (best)12.46□□□□□ -0.422e-7■■■■■ 32.4
SMNDC1O75940 MGAT4B-215ENST00000520918 799 ntTSL 312.23□□□□□ -0.452e-7■■■■■ 32.4
SMNDC1O75940 PLEC-212ENST00000527816 583 ntTSL 312.08□□□□□ -0.482e-7■■■■■ 32.4
SMNDC1O75940 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.512e-7■■■■■ 32.4
SMNDC1O75940 SOGA1-202ENST00000279034 3703 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.522e-7■■■■■ 32.4
SMNDC1O75940 PLEC-203ENST00000354589 14736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.642e-7■■■■■ 32.4
SMNDC1O75940 PLEC-207ENST00000398774 14646 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.692e-7■■■■■ 32.4
SMNDC1O75940 CRIP2-208ENST00000550577 817 ntTSL 210.29□□□□□ -0.762e-7■■■■■ 32.4
SMNDC1O75940 RBM39-241ENST00000496183 632 ntTSL 28.88□□□□□ -0.998e-11■■■■■ 32.4
SMNDC1O75940 RBM39-233ENST00000482563 1737 ntTSL 28.69□□□□□ -1.028e-11■■■■■ 32.4
SMNDC1O75940 RBM39-240ENST00000495293 759 ntTSL 27.27□□□□□ -1.258e-11■■■■■ 32.4
SMNDC1O75940 RBM39-230ENST00000476806 754 ntTSL 57.19□□□□□ -1.268e-11■■■■■ 32.4
SMNDC1O75940 RBM39-235ENST00000490354 436 ntTSL 27.12□□□□□ -1.278e-11■■■■■ 32.4
SMNDC1O75940 RBM39-225ENST00000465158 825 ntTSL 26.64□□□□□ -1.358e-11■■■■■ 32.4
SMNDC1O75940 RNU6-61P-201ENST00000365528 109 ntBASIC5.56□□□□□ -1.523e-9■■■■■ 32.1
SMNDC1O75940 RNU6-1265P-201ENST00000516342 103 ntBASIC1.71□□□□□ -2.146e-7■■■■■ 32
SMNDC1O75940 NOP58-209ENST00000492688 571 ntTSL 47.38□□□□□ -1.238e-13■■■■■ 32
SMNDC1O75940 SNRNP70-203ENST00000544278 3221 ntTSL 1 (best)16.13■□□□□ 0.177e-11■■■■■ 31.9
SMNDC1O75940 SCARNA21-201ENST00000517026 139 ntBASIC13□□□□□ -0.337e-22■■■■■ 31.9
SMNDC1O75940 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.986e-7■■■■■ 31.9
SMNDC1O75940 LPCAT4-205ENST00000563748 1357 ntTSL 215.57■□□□□ 0.086e-7■■■■■ 31.9
SMNDC1O75940 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC12.15□□□□□ -0.466e-7■■■■■ 31.9
SMNDC1O75940 LPCAT4-207ENST00000567507 672 ntTSL 37.71□□□□□ -1.186e-7■■■■■ 31.9
SMNDC1O75940 TANGO2-220ENST00000475446 557 ntTSL 412.55□□□□□ -0.41e-8■■■■■ 31.8
SMNDC1O75940 FASTK-207ENST00000466855 1894 ntTSL 519.76■□□□□ 0.753e-10■■■■■ 31.7
SMNDC1O75940 FASTK-209ENST00000469237 1904 ntTSL 518.27■□□□□ 0.523e-10■■■■■ 31.7
SMNDC1O75940 FASTK-214ENST00000483953 1178 ntTSL 517.14■□□□□ 0.333e-10■■■■■ 31.7
SMNDC1O75940 FASTK-208ENST00000467237 3011 ntTSL 1 (best)15.23■□□□□ 0.033e-10■■■■■ 31.7
SMNDC1O75940 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)10.36□□□□□ -0.757e-29■■■■■ 31.7
SMNDC1O75940 HSPA8-209ENST00000526862 504 ntTSL 34.12□□□□□ -1.757e-29■■■■■ 31.7
SMNDC1O75940 SNHG1-221ENST00000544983 870 ntTSL 210.42□□□□□ -0.744e-71■■■■■ 31.7
SMNDC1O75940 SNHG1-215ENST00000540904 594 ntTSL 58.27□□□□□ -1.094e-71■■■■■ 31.7
SMNDC1O75940 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.159e-23■■■■■ 31.7
SMNDC1O75940 SGSM3-205ENST00000462457 881 ntTSL 513.53□□□□□ -0.244e-17■■■■■ 31.6
SMNDC1O75940 SNHG1-225ENST00000545920 625 ntTSL 26.8□□□□□ -1.321e-13■■■■■ 31.5
SMNDC1O75940 SNHG1-201ENST00000535076 849 ntTSL 25.77□□□□□ -1.491e-13■■■■■ 31.5
SMNDC1O75940 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC12.76□□□□□ -0.373e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-206ENST00000537925 1487 ntTSL 1 (best) BASIC11.29□□□□□ -0.63e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-216ENST00000541416 996 ntTSL 211.15□□□□□ -0.622e-12■■■■■ 31.4
SMNDC1O75940 SNHG1-209ENST00000538654 2768 ntTSL 29.81□□□□□ -0.843e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-224ENST00000545688 610 ntTSL 39.46□□□□□ -0.93e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC9.15□□□□□ -0.943e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC8.34□□□□□ -1.073e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC7.23□□□□□ -1.253e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.98□□□□□ -1.293e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.52□□□□□ -1.373e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.84□□□□□ -1.473e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-203ENST00000537024 532 ntTSL 55.76□□□□□ -1.493e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.58□□□□□ -1.523e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-202ENST00000535689 550 ntTSL 25.3□□□□□ -1.563e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-214ENST00000540865 784 ntTSL 55.26□□□□□ -1.573e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.96□□□□□ -1.623e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.95□□□□□ -1.623e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.84□□□□□ -1.633e-14■■■■■ 31.4
SMNDC1O75940 SNHG1-220ENST00000544550 636 ntTSL 24.73□□□□□ -1.653e-14■■■■■ 31.4
SMNDC1O75940 RPL37-202ENST00000504562 505 ntTSL 210.1□□□□□ -0.795e-46■■■■■ 31.3
SMNDC1O75940 RPL37-205ENST00000509877 637 ntTSL 5 BASIC7.29□□□□□ -1.245e-46■■■■■ 31.3
SMNDC1O75940 RPL37-203ENST00000507642 425 ntTSL 37.26□□□□□ -1.255e-46■■■■■ 31.3
SMNDC1O75940 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.275e-46■■■■■ 31.3
SMNDC1O75940 SNORD72-201ENST00000390994 80 ntBASIC3.28□□□□□ -1.885e-46■■■■■ 31.3
SMNDC1O75940 CHTF18-216ENST00000565787 607 ntTSL 521.21■□□□□ 0.991e-6■■■■■ 31.3
SMNDC1O75940 SNORD101-201ENST00000384027 73 ntBASIC1.75□□□□□ -2.131e-323■■■■■ 31.3
SMNDC1O75940 HSPA8-220ENST00000533238 465 ntTSL 35.69□□□□□ -1.53e-35■■■■■ 31.2
SMNDC1O75940 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.036e-9■■■■■ 31.1
SMNDC1O75940 SPTLC2-203ENST00000554901 1518 ntTSL 1 (best)14.54□□□□□ -0.086e-9■■■■■ 31.1
SMNDC1O75940 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.7□□□□□ -1.56e-9■■■■■ 31.1
SMNDC1O75940 ITCH-205ENST00000483727 1070 ntTSL 55.48□□□□□ -1.536e-9■■■■■ 31.1
SMNDC1O75940 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.686e-9■■■■■ 31.1
SMNDC1O75940 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.29□□□□□ -1.726e-9■■■■■ 31.1
SMNDC1O75940 RNU4-1-201ENST00000363925 141 ntBASIC6.1□□□□□ -1.434e-50■■■■■ 31
SMNDC1O75940 U8.4-201ENST00000363626 134 ntBASIC4.73□□□□□ -1.651e-323■■■■■ 31
SMNDC1O75940 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.92e-7■■■■■ 30.9
SMNDC1O75940 KIFC1-214ENST00000494554 631 ntTSL 215.98■□□□□ 0.151e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-207ENST00000395611 5844 ntAPPRIS ALT1 TSL 2 BASIC11.04□□□□□ -0.641e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-206ENST00000374189 5796 ntAPPRIS ALT1 TSL 5 BASIC9.92□□□□□ -0.821e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-205ENST00000374182 5638 ntTSL 1 (best) BASIC9.61□□□□□ -0.871e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-203ENST00000374176 5628 ntAPPRIS P5 TSL 1 (best)9.32□□□□□ -0.921e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-204ENST00000374179 5637 ntTSL 1 (best)9.19□□□□□ -0.941e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-212ENST00000469110 3595 ntTSL 1 (best)8.18□□□□□ -1.11e-6■■■■■ 30.8
Retrieved 100 of 11,362 protein–RNA pairs in 274.5 ms