RNA–Protein interactions for RNA: ENST00000546215.5

SCARB1-211, Transcript of scavenger receptor class B member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARB1, Length 1,597 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-211ENST00000546215 NISCHQ9Y2I1 1504 aa49.86■■■■■ 5.57
SCARB1-211ENST00000546215 CCDC180Q9P1Z9 1646 aa44.12■■■■■ 4.65
SCARB1-211ENST00000546215 ABCC9O60706 1549 aa42.84■■■■■ 4.45
SCARB1-211ENST00000546215 ZCCHC6Q5VYS8 1495 aaKnown RBP41.61■■■■■ 4.25
SCARB1-211ENST00000546215 DCAF8L2P0C7V8 631 aa41.51■■■■■ 4.24
SCARB1-211ENST00000546215 NACADO15069 1562 aa41.41■■■■■ 4.22
SCARB1-211ENST00000546215 RB1CC1Q8TDY2 1594 aa41.35■■■■■ 4.21
SCARB1-211ENST00000546215 MYO15BQ96JP2 1530 aa41.31■■■■■ 4.2
SCARB1-211ENST00000546215 DCAF1Q9Y4B6 1507 aa41.27■■■■■ 4.2
SCARB1-211ENST00000546215 UNC13AQ9UPW8 1703 aa40.45■■■■■ 4.07
SCARB1-211ENST00000546215 SCRIBQ14160 1630 aa40.3■■■■■ 4.04
SCARB1-211ENST00000546215 PABPN1Q86U42 306 aaKnown RBP eCLIP40.14■■■■■ 4.02
SCARB1-211ENST00000546215 BICRAQ9NZM4 1560 aa40.13■■■■■ 4.02
SCARB1-211ENST00000546215 SHROOM4Q9ULL8 1493 aa39.69■■■■□ 3.94
SCARB1-211ENST00000546215 DNAJC5BQ9UF47 199 aa39.05■■■■□ 3.84
SCARB1-211ENST00000546215 EIF4G1Q04637 1599 aaKnown RBP39.02■■■■□ 3.84
SCARB1-211ENST00000546215 CECR2Q9BXF3 1484 aa38.82■■■■□ 3.81
SCARB1-211ENST00000546215 CC2D2AQ9P2K1 1620 aa38.77■■■■□ 3.8
SCARB1-211ENST00000546215 SMARCA4P51532 1647 aa38.6■■■■□ 3.77
SCARB1-211ENST00000546215 BAZ1AQ9NRL2 1556 aaPredicted RBP38.6■■■■□ 3.77
SCARB1-211ENST00000546215 MROH2BQ7Z745 1585 aa38.45■■■■□ 3.75
SCARB1-211ENST00000546215 ATAD2BQ9ULI0 1458 aa38.31■■■■□ 3.72
SCARB1-211ENST00000546215 SMARCA2P51531 1590 aa38.25■■■■□ 3.71
SCARB1-211ENST00000546215 NCAPD3P42695 1498 aa38.24■■■■□ 3.71
SCARB1-211ENST00000546215 PEG3Q9GZU2 1588 aa38.23■■■■□ 3.71
SCARB1-211ENST00000546215 RSF1Q96T23 1441 aaPredicted RBP38.16■■■■□ 3.7
SCARB1-211ENST00000546215 HMGXB3Q12766 1538 aa38.05■■■■□ 3.68
SCARB1-211ENST00000546215 WIZO95785 1651 aa38.04■■■■□ 3.68
SCARB1-211ENST00000546215 BAZ1BQ9UIG0 1483 aaKnown RBP37.99■■■■□ 3.67
SCARB1-211ENST00000546215 TOP2AP11388 1531 aaKnown RBP37.64■■■■□ 3.62
SCARB1-211ENST00000546215 SUPT5HO00267 1087 aaKnown RBP37.46■■■■□ 3.59
SCARB1-211ENST00000546215 CCDC88BA6NC98 1476 aa37.23■■■■□ 3.55
SCARB1-211ENST00000546215 NESP48681 1621 aa37.21■■■■□ 3.55
SCARB1-211ENST00000546215 CADPSQ9ULU8 1353 aa37.15■■■■□ 3.54
SCARB1-211ENST00000546215 LAMC3Q9Y6N6 1575 aa37.14■■■■□ 3.54
SCARB1-211ENST00000546215 CFTRP13569 1480 aa37■■■■□ 3.51
SCARB1-211ENST00000546215 PDS5BQ9NTI5 1447 aa36.88■■■■□ 3.49
SCARB1-211ENST00000546215 ERCC6Q03468 1493 aa36.87■■■■□ 3.49
SCARB1-211ENST00000546215 KIF21AQ7Z4S6 1674 aa36.74■■■■□ 3.47
SCARB1-211ENST00000546215 FANCD2Q9BXW9 1451 aa36.7■■■■□ 3.47
SCARB1-211ENST00000546215 PRDM2Q13029 1718 aa36.7■■■■□ 3.47
SCARB1-211ENST00000546215 CEP164Q9UPV0 1460 aa36.6■■■■□ 3.45
SCARB1-211ENST00000546215 THOC2Q8NI27 1593 aaKnown RBP36.53■■■■□ 3.44
SCARB1-211ENST00000546215 MRC2Q9UBG0 1479 aa36.47■■■■□ 3.43
SCARB1-211ENST00000546215 CUX2O14529 1486 aa36.35■■■■□ 3.41
SCARB1-211ENST00000546215 WDR62O43379 1518 aa36.35■■■■□ 3.41
SCARB1-211ENST00000546215 URB2Q14146 1524 aaKnown RBP36.32■■■■□ 3.4
SCARB1-211ENST00000546215 ABCC8Q09428 1581 aa36.16■■■■□ 3.38
SCARB1-211ENST00000546215 TOPBP1Q92547 1522 aa36.16■■■■□ 3.38
SCARB1-211ENST00000546215 DNMBPQ6XZF7 1577 aa36.13■■■■□ 3.37
SCARB1-211ENST00000546215 CUX1P39880 1505 aa36.04■■■■□ 3.36
SCARB1-211ENST00000546215 WRNQ14191 1432 aaPredicted RBP eCLIP35.94■■■■□ 3.34
SCARB1-211ENST00000546215 POLA1P09884 1462 aaPredicted RBP35.88■■■■□ 3.33
SCARB1-211ENST00000546215 FGD5Q6ZNL6 1462 aa35.84■■■■□ 3.33
SCARB1-211ENST00000546215 SYNJ1O43426 1573 aa35.83■■■■□ 3.33
SCARB1-211ENST00000546215 IFT140Q96RY7 1462 aa35.82■■■■□ 3.32
SCARB1-211ENST00000546215 TOP2BQ02880 1626 aa35.82■■■■□ 3.32
SCARB1-211ENST00000546215 BIVM-ERCC5R4GMW8 1640 aa35.8■■■■□ 3.32
SCARB1-211ENST00000546215 SOGA1O94964 1423 aa35.74■■■■□ 3.31
SCARB1-211ENST00000546215 TARBP1Q13395 1621 aaKnown RBP35.74■■■■□ 3.31
SCARB1-211ENST00000546215 RAD54L2Q9Y4B4 1467 aa35.74■■■■□ 3.31
SCARB1-211ENST00000546215 ZNF608Q9ULD9 1512 aaPredicted RBP35.65■■■■□ 3.3
SCARB1-211ENST00000546215 ABCA10Q8WWZ4 1543 aa35.52■■■■□ 3.28
SCARB1-211ENST00000546215 AQRO60306 1485 aaKnown RBP eCLIP35.51■■■■□ 3.287e-7■■■■■ 33.9
SCARB1-211ENST00000546215 WDR97A6NE52 1622 aa35.51■■■■□ 3.28
SCARB1-211ENST00000546215 TDRD9Q8NDG6 1382 aaKnown RBP35.51■■■■□ 3.27
SCARB1-211ENST00000546215 EIF4G3O43432 1585 aaKnown RBP35.5■■■■□ 3.27
SCARB1-211ENST00000546215 TRIM41Q8WV44 630 aa35.36■■■■□ 3.25
SCARB1-211ENST00000546215 GAPVD1Q14C86 1478 aa35.34■■■■□ 3.25
SCARB1-211ENST00000546215 ABCA5Q8WWZ7 1642 aa35.33■■■■□ 3.25
SCARB1-211ENST00000546215 GRIN2BQ13224 1484 aa35.27■■■■□ 3.24
SCARB1-211ENST00000546215 CHIC1Q5VXU3 224 aa35.21■■■■□ 3.23
SCARB1-211ENST00000546215 PBRM1Q86U86 1689 aa35.2■■■■□ 3.23
SCARB1-211ENST00000546215 SNAPC4Q5SXM2 1469 aa35.17■■■■□ 3.22
SCARB1-211ENST00000546215 KIF27Q86VH2 1401 aa35.16■■■■□ 3.22
SCARB1-211ENST00000546215 MAGI1Q96QZ7 1491 aaPredicted RBP35.13■■■■□ 3.22
SCARB1-211ENST00000546215 ERICH3Q5RHP9 1530 aa35.09■■■■□ 3.21
SCARB1-211ENST00000546215 IGF1RP08069 1367 aa35■■■■□ 3.19
SCARB1-211ENST00000546215 SYNJ2O15056 1496 aa34.99■■■■□ 3.19
SCARB1-211ENST00000546215 RUSC2Q8N2Y8 1516 aa34.99■■■■□ 3.19
SCARB1-211ENST00000546215 FBLN2P98095 1184 aa34.99■■■■□ 3.19
SCARB1-211ENST00000546215 CHD1O14646 1710 aa34.98■■■■□ 3.19
SCARB1-211ENST00000546215 CHMP7Q8WUX9 453 aaPredicted RBP34.96■■■■□ 3.19
SCARB1-211ENST00000546215 ADAMTS12P58397 1594 aa34.96■■■■□ 3.19
SCARB1-211ENST00000546215 OSCARQ8IYS5 282 aa34.96■■■■□ 3.19
SCARB1-211ENST00000546215 FHAD1B1AJZ9 1412 aa34.93■■■■□ 3.18
SCARB1-211ENST00000546215 DNAJC5Q9H3Z4 198 aa34.84■■■■□ 3.17
SCARB1-211ENST00000546215 CUL7Q14999 1698 aa34.83■■■■□ 3.17
SCARB1-211ENST00000546215 GRIN2AQ12879 1464 aa34.82■■■■□ 3.16
SCARB1-211ENST00000546215 CARMIL1Q5VZK9 1371 aa34.79■■■■□ 3.16
SCARB1-211ENST00000546215 EEA1Q15075 1411 aa34.72■■■■□ 3.15
SCARB1-211ENST00000546215 NUP160Q12769 1436 aa34.67■■■■□ 3.14
SCARB1-211ENST00000546215 CSRNP3Q8WYN3 585 aa34.66■■■■□ 3.14
SCARB1-211ENST00000546215 CEP170Q5SW79 1584 aa34.63■■■■□ 3.13
SCARB1-211ENST00000546215 CLASP1Q7Z460 1538 aa34.63■■■■□ 3.13
SCARB1-211ENST00000546215 FAM9AQ8IZU1 332 aaPredicted RBP34.62■■■■□ 3.13
SCARB1-211ENST00000546215 RAPGEF2Q9Y4G8 1499 aa34.61■■■■□ 3.13
SCARB1-211ENST00000546215 PRXQ9BXM0 1461 aa34.6■■■■□ 3.13
SCARB1-211ENST00000546215 KIAA0586Q9BVV6 1533 aa34.42■■■■□ 3.1
SCARB1-211ENST00000546215 ARHGEF11O15085 1522 aa34.36■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms