RNA–Protein interactions for RNA: ENST00000496183.5

RBM39-241, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 632 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-241ENST00000496183 AEBP2Q6ZN18 517 aaPredicted RBP27.15■■□□□ 1.94
RBM39-241ENST00000496183 CHIC1Q5VXU3 224 aa26.49■■□□□ 1.83
RBM39-241ENST00000496183 SENP3Q9H4L4 574 aaPredicted RBP23.31■■□□□ 1.32
RBM39-241ENST00000496183 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
RBM39-241ENST00000496183 PLPPR3Q6T4P5 718 aa21.54■■□□□ 1.04
RBM39-241ENST00000496183 FOXD1Q16676 465 aa21.49■■□□□ 1.03
RBM39-241ENST00000496183 ADRA2BP18089 450 aa20.49■□□□□ 0.87
RBM39-241ENST00000496183 PPP6R1Q9UPN7 881 aa20.46■□□□□ 0.87
RBM39-241ENST00000496183 PIAS4Q8N2W9 510 aaPredicted RBP20.34■□□□□ 0.85
RBM39-241ENST00000496183 MSH5O43196 834 aa20.08■□□□□ 0.81
RBM39-241ENST00000496183 POTEDQ86YR6 584 aa20■□□□□ 0.79
RBM39-241ENST00000496183 SCAF1Q9H7N4 1312 aaKnown RBP19.02■□□□□ 0.64
RBM39-241ENST00000496183 PPP4R3CPQ6ZMV5 832 aa18.88■□□□□ 0.61
RBM39-241ENST00000496183 MAPK8IP2Q13387 824 aaPredicted RBP18.59■□□□□ 0.57
RBM39-241ENST00000496183 DMRT2Q9Y5R5 561 aa18.51■□□□□ 0.55
RBM39-241ENST00000496183 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
RBM39-241ENST00000496183 CNKSR2Q8WXI2 1034 aa18.46■□□□□ 0.55
RBM39-241ENST00000496183 KCNA4P22459 653 aa18.18■□□□□ 0.5
RBM39-241ENST00000496183 RNF216Q9NWF9 866 aaPredicted RBP18.12■□□□□ 0.49
RBM39-241ENST00000496183 HOXD11P31277 338 aaPredicted RBP18.05■□□□□ 0.48
RBM39-241ENST00000496183 NPM3O75607 178 aaKnown RBP18.03■□□□□ 0.48
RBM39-241ENST00000496183 DCAF8L1A6NGE4 600 aa17.8■□□□□ 0.44
RBM39-241ENST00000496183 DNAJC5BQ9UF47 199 aa17.59■□□□□ 0.41
RBM39-241ENST00000496183 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
RBM39-241ENST00000496183 CACNB1Q02641 598 aaPredicted RBP17.37■□□□□ 0.37
RBM39-241ENST00000496183 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.29■□□□□ 0.366e-19■□□□□ 10.6
RBM39-241ENST00000496183 RNF39Q9H2S5 420 aa17.12■□□□□ 0.33
RBM39-241ENST00000496183 SLC4A2P04920 1241 aa17■□□□□ 0.31
RBM39-241ENST00000496183 C1QBPQ07021 282 aaKnown RBP16.95■□□□□ 0.3
RBM39-241ENST00000496183 FOXD4L1Q9NU39 408 aa16.9■□□□□ 0.3
RBM39-241ENST00000496183 U3KPZ7 1027 aaPredicted RBP16.86■□□□□ 0.29
RBM39-241ENST00000496183 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.84■□□□□ 0.29
RBM39-241ENST00000496183 HNRNPUL2Q1KMD3 747 aaKnown RBP16.84■□□□□ 0.29
RBM39-241ENST00000496183 MYCNP04198 464 aaPredicted RBP16.79■□□□□ 0.28
RBM39-241ENST00000496183 APLP2Q06481 763 aa16.78■□□□□ 0.28
RBM39-241ENST00000496183 SAMD1Q6SPF0 538 aaPredicted RBP16.71■□□□□ 0.27
RBM39-241ENST00000496183 EHMT2Q96KQ7 1210 aa16.64■□□□□ 0.25
RBM39-241ENST00000496183 ZBTB22O15209 634 aa16.63■□□□□ 0.25
RBM39-241ENST00000496183 CAPN15O75808 1086 aa16.5■□□□□ 0.23
RBM39-241ENST00000496183 CSRNP3Q8WYN3 585 aa16.46■□□□□ 0.23
RBM39-241ENST00000496183 ZNF219Q9P2Y4 722 aaPredicted RBP16.44■□□□□ 0.22
RBM39-241ENST00000496183 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
RBM39-241ENST00000496183 ATXN8OSP0DMR3 200 aa16.38■□□□□ 0.21
RBM39-241ENST00000496183 TRHP20396 242 aaPredicted RBP16.35■□□□□ 0.21
RBM39-241ENST00000496183 DSG3P32926 999 aa16.17■□□□□ 0.18
RBM39-241ENST00000496183 ATF5Q9Y2D1 282 aaPredicted RBP16.13■□□□□ 0.17
RBM39-241ENST00000496183 ABCB7O75027 752 aa16.08■□□□□ 0.16
RBM39-241ENST00000496183 POLA2Q14181 598 aa16.02■□□□□ 0.16
RBM39-241ENST00000496183 ZBTB12Q9Y330 459 aaPredicted RBP15.93■□□□□ 0.14
RBM39-241ENST00000496183 FBLN2P98095 1184 aa15.76■□□□□ 0.11
RBM39-241ENST00000496183 RBM42Q9BTD8 480 aaKnown RBP15.61■□□□□ 0.09
RBM39-241ENST00000496183 POTEHQ6S545 545 aa15.6■□□□□ 0.09
RBM39-241ENST00000496183 OSCARQ8IYS5 282 aa15.47■□□□□ 0.07
RBM39-241ENST00000496183 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
RBM39-241ENST00000496183 SPDYE2BA6NHP3 402 aa15.39■□□□□ 0.05
RBM39-241ENST00000496183 SPDYE6P0CI01 402 aa15.39■□□□□ 0.05
RBM39-241ENST00000496183 SPDYE2Q495Y8 402 aa15.39■□□□□ 0.05
RBM39-241ENST00000496183 AKT1S1Q96B36 256 aa15.3■□□□□ 0.04
RBM39-241ENST00000496183 ZNF692Q9BU19 519 aaPredicted RBP15.28■□□□□ 0.04
RBM39-241ENST00000496183 SPDYE4A6NLX3 237 aa15.17■□□□□ 0.02
RBM39-241ENST00000496183 SSUH2Q9Y2M2 353 aa15.16■□□□□ 0.02
RBM39-241ENST00000496183 REM2Q8IYK8 340 aaPredicted RBP15.07■□□□□ 0
RBM39-241ENST00000496183 PABPN1Q86U42 306 aaKnown RBP eCLIP15.04■□□□□ -05e-16■□□□□ 10.9
RBM39-241ENST00000496183 FKBP8Q14318 412 aa15□□□□□ -0.01
RBM39-241ENST00000496183 SPDYE1Q8NFV5 336 aaPredicted RBP15□□□□□ -0.01
RBM39-241ENST00000496183 CHRDL2Q6WN34 429 aa14.98□□□□□ -0.01
RBM39-241ENST00000496183 CLEC11AQ9Y240 323 aa14.9□□□□□ -0.02
RBM39-241ENST00000496183 PITPNM1O00562 1244 aa14.89□□□□□ -0.03
RBM39-241ENST00000496183 STAG3Q9UJ98 1225 aa14.89□□□□□ -0.03
RBM39-241ENST00000496183 PROM2Q8N271 834 aa14.8□□□□□ -0.04
RBM39-241ENST00000496183 PRR29P0C7W0 189 aa14.77□□□□□ -0.05
RBM39-241ENST00000496183 FBXO3Q9UK99 471 aa14.67□□□□□ -0.06
RBM39-241ENST00000496183 FXR2P51116 673 aaKnown RBP eCLIP14.64□□□□□ -0.07
RBM39-241ENST00000496183 PIP4P2Q8N4L2 257 aa14.62□□□□□ -0.07
RBM39-241ENST00000496183 PLEKHG5O94827 1062 aa14.57□□□□□ -0.08
RBM39-241ENST00000496183 PRKAR2AP13861 404 aaKnown RBP14.55□□□□□ -0.08
RBM39-241ENST00000496183 SP7Q8TDD2 431 aaPredicted RBP14.52□□□□□ -0.09
RBM39-241ENST00000496183 CHADLQ6NUI6 762 aa14.44□□□□□ -0.1
RBM39-241ENST00000496183 MIER1Q8N108 512 aa14.44□□□□□ -0.1
RBM39-241ENST00000496183 PLCD3Q8N3E9 789 aa14.44□□□□□ -0.1
RBM39-241ENST00000496183 CREBZFQ9NS37 354 aa14.41□□□□□ -0.1
RBM39-241ENST00000496183 ZBTB47Q9UFB7 747 aaPredicted RBP14.4□□□□□ -0.1
RBM39-241ENST00000496183 HAX1O00165 279 aa14.38□□□□□ -0.11
RBM39-241ENST00000496183 NPM1P06748 294 aaKnown RBP eCLIP14.37□□□□□ -0.11
RBM39-241ENST00000496183 FARP1Q9Y4F1 1045 aaPredicted RBP14.36□□□□□ -0.11
RBM39-241ENST00000496183 VASPP50552 380 aaPredicted RBP14.34□□□□□ -0.11
RBM39-241ENST00000496183 EVX2Q03828 476 aa14.27□□□□□ -0.13
RBM39-241ENST00000496183 PAK3O75914 559 aaPredicted RBP14.22□□□□□ -0.13
RBM39-241ENST00000496183 KLHL34Q8N239 644 aa14.21□□□□□ -0.13
RBM39-241ENST00000496183 MNX1P50219 401 aaPredicted RBP14.18□□□□□ -0.14
RBM39-241ENST00000496183 C19orf67A6NJJ6 358 aa14.15□□□□□ -0.14
RBM39-241ENST00000496183 CD44P16070 742 aaKnown RBP14.15□□□□□ -0.14
RBM39-241ENST00000496183 IFNLR1Q8IU57 520 aaPredicted RBP14.04□□□□□ -0.16
RBM39-241ENST00000496183 FAM212AQ96EL1 285 aa14.04□□□□□ -0.16
RBM39-241ENST00000496183 ZRANB1Q9UGI0 708 aa14.04□□□□□ -0.16
RBM39-241ENST00000496183 SPOCK2Q92563 424 aa14.03□□□□□ -0.16
RBM39-241ENST00000496183 CLCN6P51797 869 aa14.01□□□□□ -0.17
RBM39-241ENST00000496183 TSPYL2Q9H2G4 693 aaPredicted RBP14□□□□□ -0.17
RBM39-241ENST00000496183 NUBP1P53384 320 aa13.98□□□□□ -0.17
RBM39-241ENST00000496183 RASEFQ8IZ41 740 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms