RNA–Protein interactions for RNA: ENST00000544327.1

SCARB1-208, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5 BASIC

Gene SCARB1, Length 1,812 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-208ENST00000544327 NISCHQ9Y2I1 1504 aa37.93■■■■□ 3.66
SCARB1-208ENST00000544327 CCDC180Q9P1Z9 1646 aa32.62■■■□□ 2.81
SCARB1-208ENST00000544327 ZCCHC6Q5VYS8 1495 aaKnown RBP32.07■■■□□ 2.72
SCARB1-208ENST00000544327 SHROOM4Q9ULL8 1493 aa31.58■■■□□ 2.65
SCARB1-208ENST00000544327 DCAF1Q9Y4B6 1507 aa31.37■■■□□ 2.61
SCARB1-208ENST00000544327 DCAF8L2P0C7V8 631 aa30.91■■■□□ 2.54
SCARB1-208ENST00000544327 SUPT5HO00267 1087 aaKnown RBP30.83■■■□□ 2.53
SCARB1-208ENST00000544327 MYO15BQ96JP2 1530 aa30.64■■■□□ 2.49
SCARB1-208ENST00000544327 ABCC9O60706 1549 aa30.21■■■□□ 2.43
SCARB1-208ENST00000544327 NACADO15069 1562 aa30.14■■■□□ 2.42
SCARB1-208ENST00000544327 SCRIBQ14160 1630 aa30.14■■■□□ 2.42
SCARB1-208ENST00000544327 CHIC1Q5VXU3 224 aa30.07■■■□□ 2.4
SCARB1-208ENST00000544327 RSF1Q96T23 1441 aaPredicted RBP29.8■■■□□ 2.36
SCARB1-208ENST00000544327 RB1CC1Q8TDY2 1594 aa29.64■■■□□ 2.34
SCARB1-208ENST00000544327 CECR2Q9BXF3 1484 aa29.4■■■□□ 2.3
SCARB1-208ENST00000544327 MROH2BQ7Z745 1585 aa29.35■■■□□ 2.29
SCARB1-208ENST00000544327 BAZ1AQ9NRL2 1556 aaPredicted RBP29.19■■■□□ 2.26
SCARB1-208ENST00000544327 WIZO95785 1651 aa29.17■■■□□ 2.26
SCARB1-208ENST00000544327 UNC13AQ9UPW8 1703 aa29.15■■■□□ 2.26
SCARB1-208ENST00000544327 SMARCA4P51532 1647 aa28.96■■■□□ 2.23
SCARB1-208ENST00000544327 LOC105371045A0A1W2PR82 267 aa28.94■■■□□ 2.22
SCARB1-208ENST00000544327 TRIM41Q8WV44 630 aa28.92■■■□□ 2.22
SCARB1-208ENST00000544327 TOP2AP11388 1531 aaKnown RBP28.88■■■□□ 2.21
SCARB1-208ENST00000544327 EIF4G1Q04637 1599 aaKnown RBP28.86■■■□□ 2.21
SCARB1-208ENST00000544327 BICRAQ9NZM4 1560 aa28.8■■■□□ 2.2
SCARB1-208ENST00000544327 SMARCA2P51531 1590 aa28.65■■■□□ 2.18
SCARB1-208ENST00000544327 HRCP23327 699 aa28.62■■■□□ 2.17
SCARB1-208ENST00000544327 PCGF6Q9BYE7 350 aa28.61■■■□□ 2.17
SCARB1-208ENST00000544327 CCDC88BA6NC98 1476 aa28.6■■■□□ 2.17
SCARB1-208ENST00000544327 PEG3Q9GZU2 1588 aa28.58■■■□□ 2.17
SCARB1-208ENST00000544327 PABPN1Q86U42 306 aaKnown RBP eCLIP28.45■■■□□ 2.14
SCARB1-208ENST00000544327 FAM9AQ8IZU1 332 aaPredicted RBP28.41■■■□□ 2.14
SCARB1-208ENST00000544327 TRIM26Q12899 539 aaPredicted RBP28.39■■■□□ 2.13
SCARB1-208ENST00000544327 ABCC8Q09428 1581 aa28.31■■■□□ 2.12
SCARB1-208ENST00000544327 ATAD2BQ9ULI0 1458 aa28.24■■■□□ 2.11
SCARB1-208ENST00000544327 BAZ1BQ9UIG0 1483 aaKnown RBP28.11■■■□□ 2.09
SCARB1-208ENST00000544327 EEA1Q15075 1411 aa28.1■■■□□ 2.09
SCARB1-208ENST00000544327 WRNQ14191 1432 aaPredicted RBP eCLIP27.99■■■□□ 2.07
SCARB1-208ENST00000544327 SOGA1O94964 1423 aa27.97■■■□□ 2.07
SCARB1-208ENST00000544327 EHMT2Q96KQ7 1210 aa27.96■■■□□ 2.07
SCARB1-208ENST00000544327 SYNJ1O43426 1573 aa27.88■■■□□ 2.05
SCARB1-208ENST00000544327 HMGXB3Q12766 1538 aa27.87■■■□□ 2.05
SCARB1-208ENST00000544327 TNIKQ9UKE5 1360 aa27.86■■■□□ 2.05
SCARB1-208ENST00000544327 CSRNP3Q8WYN3 585 aa27.83■■■□□ 2.05
SCARB1-208ENST00000544327 NCAPD3P42695 1498 aa27.82■■■□□ 2.04
SCARB1-208ENST00000544327 RUSC2Q8N2Y8 1516 aa27.82■■■□□ 2.04
SCARB1-208ENST00000544327 PPARGC1BQ86YN6 1023 aaKnown RBP27.78■■■□□ 2.04
SCARB1-208ENST00000544327 CEP162Q5TB80 1403 aa27.78■■■□□ 2.04
SCARB1-208ENST00000544327 GOLGA3Q08378 1498 aa27.76■■■□□ 2.03
SCARB1-208ENST00000544327 ZEB1P37275 1124 aaPredicted RBP27.76■■■□□ 2.03
SCARB1-208ENST00000544327 KIF21BO75037 1637 aa27.72■■■□□ 2.03
SCARB1-208ENST00000544327 TOP2BQ02880 1626 aa27.68■■■□□ 2.02
SCARB1-208ENST00000544327 CEP164Q9UPV0 1460 aa27.65■■■□□ 2.02
SCARB1-208ENST00000544327 BIVM-ERCC5R4GMW8 1640 aa27.65■■■□□ 2.02
SCARB1-208ENST00000544327 UBTFP17480 764 aaKnown RBP27.53■■■□□ 2
SCARB1-208ENST00000544327 CFTRP13569 1480 aa27.48■■□□□ 1.99
SCARB1-208ENST00000544327 PRDM2Q13029 1718 aa27.42■■□□□ 1.98
SCARB1-208ENST00000544327 CUX1P39880 1505 aa27.39■■□□□ 1.97
SCARB1-208ENST00000544327 RAPGEF2Q9Y4G8 1499 aa27.36■■□□□ 1.97
SCARB1-208ENST00000544327 ERICH3Q5RHP9 1530 aa27.34■■□□□ 1.97
SCARB1-208ENST00000544327 CLIP1P30622 1438 aa27.34■■□□□ 1.97
SCARB1-208ENST00000544327 PRXQ9BXM0 1461 aa27.29■■□□□ 1.96
SCARB1-208ENST00000544327 VPS8Q8N3P4 1428 aa27.25■■□□□ 1.95
SCARB1-208ENST00000544327 KIF27Q86VH2 1401 aa27.19■■□□□ 1.94
SCARB1-208ENST00000544327 CC2D2AQ9P2K1 1620 aa27.17■■□□□ 1.94
SCARB1-208ENST00000544327 CADPSQ9ULU8 1353 aa27.16■■□□□ 1.94
SCARB1-208ENST00000544327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.08■■□□□ 1.93
SCARB1-208ENST00000544327 CCER1Q8TC90 406 aaPredicted RBP27.06■■□□□ 1.92
SCARB1-208ENST00000544327 TTBK1Q5TCY1 1321 aaPredicted RBP27.03■■□□□ 1.92
SCARB1-208ENST00000544327 ARAP1Q96P48 1450 aa26.99■■□□□ 1.91
SCARB1-208ENST00000544327 APLP2Q06481 763 aa26.92■■□□□ 1.9
SCARB1-208ENST00000544327 CUX2O14529 1486 aa26.91■■□□□ 1.9
SCARB1-208ENST00000544327 FGD5Q6ZNL6 1462 aa26.91■■□□□ 1.9
SCARB1-208ENST00000544327 FANCD2Q9BXW9 1451 aa26.87■■□□□ 1.89
SCARB1-208ENST00000544327 IGF1RP08069 1367 aa26.87■■□□□ 1.89
SCARB1-208ENST00000544327 DNMBPQ6XZF7 1577 aa26.82■■□□□ 1.88
SCARB1-208ENST00000544327 ARHGAP35Q9NRY4 1499 aa26.8■■□□□ 1.88
SCARB1-208ENST00000544327 RANGAP1P46060 587 aaPredicted RBP26.77■■□□□ 1.88
SCARB1-208ENST00000544327 CARMIL1Q5VZK9 1371 aa26.74■■□□□ 1.87
SCARB1-208ENST00000544327 LAMC3Q9Y6N6 1575 aa26.71■■□□□ 1.87
SCARB1-208ENST00000544327 ABCA10Q8WWZ4 1543 aa26.71■■□□□ 1.87
SCARB1-208ENST00000544327 TOPBP1Q92547 1522 aa26.71■■□□□ 1.87
SCARB1-208ENST00000544327 HNRNPUL2Q1KMD3 747 aaKnown RBP26.65■■□□□ 1.86
SCARB1-208ENST00000544327 POLA1P09884 1462 aaPredicted RBP26.64■■□□□ 1.86
SCARB1-208ENST00000544327 MAP3K1Q13233 1512 aa26.64■■□□□ 1.86
SCARB1-208ENST00000544327 NESP48681 1621 aa26.63■■□□□ 1.85
SCARB1-208ENST00000544327 RRBP1Q9P2E9 1410 aaKnown RBP26.62■■□□□ 1.85
SCARB1-208ENST00000544327 KANK4Q5T7N3 995 aaPredicted RBP26.59■■□□□ 1.85
SCARB1-208ENST00000544327 CUL7Q14999 1698 aa26.59■■□□□ 1.85
SCARB1-208ENST00000544327 RAD54L2Q9Y4B4 1467 aa26.57■■□□□ 1.84
SCARB1-208ENST00000544327 WDR97A6NE52 1622 aa26.56■■□□□ 1.84
SCARB1-208ENST00000544327 TIAM1Q13009 1591 aa26.52■■□□□ 1.84
SCARB1-208ENST00000544327 URB2Q14146 1524 aaKnown RBP26.51■■□□□ 1.83
SCARB1-208ENST00000544327 FHAD1B1AJZ9 1412 aa26.47■■□□□ 1.83
SCARB1-208ENST00000544327 CLSPNQ9HAW4 1339 aa26.46■■□□□ 1.83
SCARB1-208ENST00000544327 EFCAB5A4FU69 1503 aa26.46■■□□□ 1.83
SCARB1-208ENST00000544327 PDS5BQ9NTI5 1447 aa26.45■■□□□ 1.82
SCARB1-208ENST00000544327 CTTNBP2Q8WZ74 1663 aa26.44■■□□□ 1.82
SCARB1-208ENST00000544327 ABCA5Q8WWZ7 1642 aa26.43■■□□□ 1.82
SCARB1-208ENST00000544327 CFAP43Q8NDM7 1665 aa26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms