RNA–Protein interactions for RNA: ENST00000339570.9

SCARB1-202, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5 BASIC

Gene SCARB1, Length 3,329 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-202ENST00000339570 NISCHQ9Y2I1 1504 aa31.38■■■□□ 2.61
SCARB1-202ENST00000339570 SHROOM4Q9ULL8 1493 aa28.34■■■□□ 2.13
SCARB1-202ENST00000339570 SUPT5HO00267 1087 aaKnown RBP28.02■■■□□ 2.08
SCARB1-202ENST00000339570 DCAF8L2P0C7V8 631 aa27.46■■□□□ 1.99
SCARB1-202ENST00000339570 PCGF6Q9BYE7 350 aa26.98■■□□□ 1.91
SCARB1-202ENST00000339570 CHIC1Q5VXU3 224 aa26.87■■□□□ 1.89
SCARB1-202ENST00000339570 MYO15BQ96JP2 1530 aa26.84■■□□□ 1.89
SCARB1-202ENST00000339570 PPARGC1BQ86YN6 1023 aaKnown RBP26.78■■□□□ 1.88
SCARB1-202ENST00000339570 HRCP23327 699 aa26.77■■□□□ 1.88
SCARB1-202ENST00000339570 LOC105371045A0A1W2PR82 267 aa26.58■■□□□ 1.85
SCARB1-202ENST00000339570 ZCCHC6Q5VYS8 1495 aaKnown RBP26.51■■□□□ 1.83
SCARB1-202ENST00000339570 EHMT2Q96KQ7 1210 aa26.34■■□□□ 1.81
SCARB1-202ENST00000339570 FAM9AQ8IZU1 332 aaPredicted RBP26.09■■□□□ 1.77
SCARB1-202ENST00000339570 CCDC180Q9P1Z9 1646 aa25.93■■□□□ 1.74
SCARB1-202ENST00000339570 TRIM26Q12899 539 aaPredicted RBP25.83■■□□□ 1.73
SCARB1-202ENST00000339570 TRIM41Q8WV44 630 aa25.7■■□□□ 1.71
SCARB1-202ENST00000339570 DCAF1Q9Y4B6 1507 aa25.69■■□□□ 1.7
SCARB1-202ENST00000339570 TTBK1Q5TCY1 1321 aaPredicted RBP25.5■■□□□ 1.67
SCARB1-202ENST00000339570 SCRIBQ14160 1630 aa25.3■■□□□ 1.64
SCARB1-202ENST00000339570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.24■■□□□ 1.63
SCARB1-202ENST00000339570 ZEB1P37275 1124 aaPredicted RBP25.23■■□□□ 1.63
SCARB1-202ENST00000339570 RSF1Q96T23 1441 aaPredicted RBP25.23■■□□□ 1.63
SCARB1-202ENST00000339570 SCAF1Q9H7N4 1312 aaKnown RBP25.18■■□□□ 1.62
SCARB1-202ENST00000339570 CCER1Q8TC90 406 aaPredicted RBP25.1■■□□□ 1.61
SCARB1-202ENST00000339570 RB1CC1Q8TDY2 1594 aa25.1■■□□□ 1.61
SCARB1-202ENST00000339570 ABCC9O60706 1549 aa25.06■■□□□ 1.6
SCARB1-202ENST00000339570 CECR2Q9BXF3 1484 aa24.89■■□□□ 1.57
SCARB1-202ENST00000339570 NEUROD1Q13562 356 aa24.78■■□□□ 1.56
SCARB1-202ENST00000339570 YTHDC1Q96MU7 727 aaKnown RBP24.7■■□□□ 1.54
SCARB1-202ENST00000339570 DIEXFQ68CQ4 756 aaKnown RBP24.69■■□□□ 1.54
SCARB1-202ENST00000339570 MROH2BQ7Z745 1585 aa24.68■■□□□ 1.54
SCARB1-202ENST00000339570 GTF3C3Q9Y5Q9 886 aa24.64■■□□□ 1.54
SCARB1-202ENST00000339570 RANGAP1P46060 587 aaPredicted RBP24.64■■□□□ 1.53
SCARB1-202ENST00000339570 ACIN1Q9UKV3 1341 aaKnown RBP24.63■■□□□ 1.53
SCARB1-202ENST00000339570 PELP1Q8IZL8 1130 aaKnown RBP24.62■■□□□ 1.53
SCARB1-202ENST00000339570 UBTFP17480 764 aaKnown RBP24.62■■□□□ 1.53
SCARB1-202ENST00000339570 WIZO95785 1651 aa24.57■■□□□ 1.52
SCARB1-202ENST00000339570 HNRNPUL2Q1KMD3 747 aaKnown RBP24.48■■□□□ 1.51
SCARB1-202ENST00000339570 CENPBP07199 599 aaPredicted RBP24.45■■□□□ 1.51
SCARB1-202ENST00000339570 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
SCARB1-202ENST00000339570 CCDC88BA6NC98 1476 aa24.35■■□□□ 1.49
SCARB1-202ENST00000339570 SOGA1O94964 1423 aa24.33■■□□□ 1.49
SCARB1-202ENST00000339570 CEP162Q5TB80 1403 aa24.29■■□□□ 1.48
SCARB1-202ENST00000339570 PABPN1Q86U42 306 aaKnown RBP eCLIP24.26■■□□□ 1.47
SCARB1-202ENST00000339570 CSRNP3Q8WYN3 585 aa24.22■■□□□ 1.47
SCARB1-202ENST00000339570 RUSC2Q8N2Y8 1516 aa24.22■■□□□ 1.47
SCARB1-202ENST00000339570 ZNF316A6NFI3 1004 aaPredicted RBP24.22■■□□□ 1.47
SCARB1-202ENST00000339570 MIER1Q8N108 512 aa24.17■■□□□ 1.46
SCARB1-202ENST00000339570 NACADO15069 1562 aa24.12■■□□□ 1.45
SCARB1-202ENST00000339570 APLP2Q06481 763 aa24.06■■□□□ 1.44
SCARB1-202ENST00000339570 BAZ1AQ9NRL2 1556 aaPredicted RBP24.05■■□□□ 1.44
SCARB1-202ENST00000339570 TNIKQ9UKE5 1360 aa23.99■■□□□ 1.43
SCARB1-202ENST00000339570 WRNQ14191 1432 aaPredicted RBP eCLIP23.91■■□□□ 1.42
SCARB1-202ENST00000339570 ITGAEP38570 1179 aa23.88■■□□□ 1.41
SCARB1-202ENST00000339570 EIF4G1Q04637 1599 aaKnown RBP23.87■■□□□ 1.41
SCARB1-202ENST00000339570 TOP2AP11388 1531 aaKnown RBP23.85■■□□□ 1.41
SCARB1-202ENST00000339570 SMARCA2P51531 1590 aa23.84■■□□□ 1.41
SCARB1-202ENST00000339570 GOLGA3Q08378 1498 aa23.8■■□□□ 1.4
SCARB1-202ENST00000339570 CLIP1P30622 1438 aa23.78■■□□□ 1.4
SCARB1-202ENST00000339570 SMARCA4P51532 1647 aa23.77■■□□□ 1.4
SCARB1-202ENST00000339570 EEA1Q15075 1411 aa23.63■■□□□ 1.37
SCARB1-202ENST00000339570 RAPGEF2Q9Y4G8 1499 aa23.6■■□□□ 1.37
SCARB1-202ENST00000339570 KANK4Q5T7N3 995 aaPredicted RBP23.58■■□□□ 1.37
SCARB1-202ENST00000339570 CEP164Q9UPV0 1460 aa23.57■■□□□ 1.36
SCARB1-202ENST00000339570 BCANQ96GW7 911 aa23.54■■□□□ 1.36
SCARB1-202ENST00000339570 SYNJ1O43426 1573 aa23.52■■□□□ 1.36
SCARB1-202ENST00000339570 VPS8Q8N3P4 1428 aa23.52■■□□□ 1.36
SCARB1-202ENST00000339570 KCNH8Q96L42 1107 aa23.49■■□□□ 1.35
SCARB1-202ENST00000339570 ATP1B4Q9UN42 357 aaPredicted RBP23.48■■□□□ 1.35
SCARB1-202ENST00000339570 SUPT16HQ9Y5B9 1047 aaKnown RBP23.42■■□□□ 1.34
SCARB1-202ENST00000339570 HIRIP3Q9BW71 556 aaPredicted RBP23.41■■□□□ 1.34
SCARB1-202ENST00000339570 UNC13AQ9UPW8 1703 aa23.41■■□□□ 1.34
SCARB1-202ENST00000339570 DHX57Q6P158 1386 aaKnown RBP23.37■■□□□ 1.33
SCARB1-202ENST00000339570 KIF21BO75037 1637 aa23.34■■□□□ 1.33
SCARB1-202ENST00000339570 MYT1Q01538 1121 aa23.32■■□□□ 1.32
SCARB1-202ENST00000339570 P3H3Q8IVL6 736 aa23.32■■□□□ 1.32
SCARB1-202ENST00000339570 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
SCARB1-202ENST00000339570 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
SCARB1-202ENST00000339570 FAM50AQ14320 339 aaKnown RBP23.28■■□□□ 1.32
SCARB1-202ENST00000339570 SIN3AQ96ST3 1273 aa23.24■■□□□ 1.31
SCARB1-202ENST00000339570 ATAD2BQ9ULI0 1458 aa23.21■■□□□ 1.31
SCARB1-202ENST00000339570 BICRAQ9NZM4 1560 aa23.17■■□□□ 1.3
SCARB1-202ENST00000339570 FKBP8Q14318 412 aa23.16■■□□□ 1.3
SCARB1-202ENST00000339570 TRIM52Q96A61 297 aa23.15■■□□□ 1.3
SCARB1-202ENST00000339570 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
SCARB1-202ENST00000339570 TSHZ2Q9NRE2 1034 aa23.15■■□□□ 1.3
SCARB1-202ENST00000339570 CCNB3Q8WWL7 1395 aa23.09■■□□□ 1.29
SCARB1-202ENST00000339570 RAB3GAP2Q9H2M9 1393 aa23.06■■□□□ 1.28
SCARB1-202ENST00000339570 CLSPNQ9HAW4 1339 aa23.03■■□□□ 1.28
SCARB1-202ENST00000339570 KIF27Q86VH2 1401 aa22.95■■□□□ 1.26
SCARB1-202ENST00000339570 PRXQ9BXM0 1461 aa22.95■■□□□ 1.26
SCARB1-202ENST00000339570 IRX6P78412 446 aaPredicted RBP22.94■■□□□ 1.26
SCARB1-202ENST00000339570 TOP2BQ02880 1626 aa22.94■■□□□ 1.26
SCARB1-202ENST00000339570 NEFLP07196 543 aa22.93■■□□□ 1.26
SCARB1-202ENST00000339570 ARHGAP35Q9NRY4 1499 aa22.9■■□□□ 1.26
SCARB1-202ENST00000339570 RRBP1Q9P2E9 1410 aaKnown RBP22.88■■□□□ 1.25
SCARB1-202ENST00000339570 PEG3Q9GZU2 1588 aa22.88■■□□□ 1.25
SCARB1-202ENST00000339570 CNGB1Q14028 1251 aaPredicted RBP22.88■■□□□ 1.25
SCARB1-202ENST00000339570 CUX1P39880 1505 aa22.86■■□□□ 1.25
SCARB1-202ENST00000339570 ANP32CO43423 234 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms