RNA–Protein interactions for RNA: ENST00000476806.5

RBM39-230, Transcript of RNA binding motif protein 39, humanhuman

TSL 5

Gene RBM39, Length 754 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-230ENST00000476806 AEBP2Q6ZN18 517 aaPredicted RBP25.27■■□□□ 1.64
RBM39-230ENST00000476806 CHIC1Q5VXU3 224 aa23.56■■□□□ 1.36
RBM39-230ENST00000476806 SENP3Q9H4L4 574 aaPredicted RBP21.61■■□□□ 1.05
RBM39-230ENST00000476806 PHF23Q9BUL5 403 aaPredicted RBP21.26■□□□□ 0.99
RBM39-230ENST00000476806 FOXD1Q16676 465 aa20.23■□□□□ 0.83
RBM39-230ENST00000476806 POTEDQ86YR6 584 aa19.65■□□□□ 0.74
RBM39-230ENST00000476806 MSH5O43196 834 aa19.12■□□□□ 0.65
RBM39-230ENST00000476806 PIAS4Q8N2W9 510 aaPredicted RBP18.74■□□□□ 0.59
RBM39-230ENST00000476806 PPP6R1Q9UPN7 881 aa18.5■□□□□ 0.55
RBM39-230ENST00000476806 PLPPR3Q6T4P5 718 aa18.45■□□□□ 0.54
RBM39-230ENST00000476806 ADRA2BP18089 450 aa18.38■□□□□ 0.53
RBM39-230ENST00000476806 NISCHQ9Y2I1 1504 aa17.47■□□□□ 0.39
RBM39-230ENST00000476806 MAPK8IP2Q13387 824 aaPredicted RBP17.06■□□□□ 0.32
RBM39-230ENST00000476806 DMRT2Q9Y5R5 561 aa17.06■□□□□ 0.32
RBM39-230ENST00000476806 SCAF1Q9H7N4 1312 aaKnown RBP16.78■□□□□ 0.28
RBM39-230ENST00000476806 CACNB1Q02641 598 aaPredicted RBP16.74■□□□□ 0.27
RBM39-230ENST00000476806 DCAF8L1A6NGE4 600 aa16.34■□□□□ 0.21
RBM39-230ENST00000476806 RNF39Q9H2S5 420 aa16.29■□□□□ 0.2
RBM39-230ENST00000476806 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
RBM39-230ENST00000476806 PPP4R3CPQ6ZMV5 832 aa16.1■□□□□ 0.17
RBM39-230ENST00000476806 C1QBPQ07021 282 aaKnown RBP16■□□□□ 0.15
RBM39-230ENST00000476806 RNF216Q9NWF9 866 aaPredicted RBP15.93■□□□□ 0.14
RBM39-230ENST00000476806 CNKSR2Q8WXI2 1034 aa15.92■□□□□ 0.14
RBM39-230ENST00000476806 DNAJC5BQ9UF47 199 aa15.78■□□□□ 0.12
RBM39-230ENST00000476806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.41■□□□□ 0.062e-12■□□□□ 10.8
RBM39-230ENST00000476806 CCDC180Q9P1Z9 1646 aa15.41■□□□□ 0.06
RBM39-230ENST00000476806 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
RBM39-230ENST00000476806 POTEHQ6S545 545 aa15.28■□□□□ 0.04
RBM39-230ENST00000476806 ABCC9O60706 1549 aa15.12■□□□□ 0.01
RBM39-230ENST00000476806 NPM3O75607 178 aaKnown RBP15.1■□□□□ 0.01
RBM39-230ENST00000476806 DSG3P32926 999 aa15.06■□□□□ 0
RBM39-230ENST00000476806 U3KPZ7 1027 aaPredicted RBP15.06■□□□□ 0
RBM39-230ENST00000476806 SPINK5Q9NQ38 1064 aaPredicted RBP15.02■□□□□ -0
RBM39-230ENST00000476806 CAPN15O75808 1086 aa14.97□□□□□ -0.01
RBM39-230ENST00000476806 ZCCHC6Q5VYS8 1495 aaKnown RBP14.71□□□□□ -0.05
RBM39-230ENST00000476806 DCAF1Q9Y4B6 1507 aa14.64□□□□□ -0.07
RBM39-230ENST00000476806 TRHP20396 242 aaPredicted RBP14.6□□□□□ -0.07
RBM39-230ENST00000476806 ABCB7O75027 752 aa14.59□□□□□ -0.07
RBM39-230ENST00000476806 SLC4A2P04920 1241 aa14.59□□□□□ -0.07
RBM39-230ENST00000476806 ZNF219Q9P2Y4 722 aaPredicted RBP14.56□□□□□ -0.08
RBM39-230ENST00000476806 APLP2Q06481 763 aa14.52□□□□□ -0.09
RBM39-230ENST00000476806 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
RBM39-230ENST00000476806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.4□□□□□ -0.1
RBM39-230ENST00000476806 HNRNPUL2Q1KMD3 747 aaKnown RBP14.4□□□□□ -0.1
RBM39-230ENST00000476806 RBM42Q9BTD8 480 aaKnown RBP14.35□□□□□ -0.11
RBM39-230ENST00000476806 NACADO15069 1562 aa14.34□□□□□ -0.11
RBM39-230ENST00000476806 KCNA4P22459 653 aa14.31□□□□□ -0.12
RBM39-230ENST00000476806 SAMD1Q6SPF0 538 aaPredicted RBP14.3□□□□□ -0.12
RBM39-230ENST00000476806 CHRDL2Q6WN34 429 aa14.28□□□□□ -0.12
RBM39-230ENST00000476806 DCAF8L2P0C7V8 631 aa14.22□□□□□ -0.13
RBM39-230ENST00000476806 RB1CC1Q8TDY2 1594 aa14.19□□□□□ -0.14
RBM39-230ENST00000476806 POLA2Q14181 598 aa14.1□□□□□ -0.15
RBM39-230ENST00000476806 PABPN1Q86U42 306 aaKnown RBP eCLIP14.07□□□□□ -0.161e-8■□□□□ 10.4
RBM39-230ENST00000476806 SP7Q8TDD2 431 aaPredicted RBP14.05□□□□□ -0.16
RBM39-230ENST00000476806 SHROOM4Q9ULL8 1493 aa13.97□□□□□ -0.17
RBM39-230ENST00000476806 MYCNP04198 464 aaPredicted RBP13.96□□□□□ -0.17
RBM39-230ENST00000476806 DNAJC5Q9H3Z4 198 aa13.96□□□□□ -0.17
RBM39-230ENST00000476806 SCRIBQ14160 1630 aa13.91□□□□□ -0.18
RBM39-230ENST00000476806 AKT1S1Q96B36 256 aa13.91□□□□□ -0.18
RBM39-230ENST00000476806 PIP4P2Q8N4L2 257 aa13.83□□□□□ -0.2
RBM39-230ENST00000476806 REM2Q8IYK8 340 aaPredicted RBP13.8□□□□□ -0.2
RBM39-230ENST00000476806 ZBTB12Q9Y330 459 aaPredicted RBP13.75□□□□□ -0.21
RBM39-230ENST00000476806 BICRAQ9NZM4 1560 aa13.74□□□□□ -0.21
RBM39-230ENST00000476806 ATF5Q9Y2D1 282 aaPredicted RBP13.72□□□□□ -0.21
RBM39-230ENST00000476806 HAX1O00165 279 aa13.7□□□□□ -0.22
RBM39-230ENST00000476806 UNC13AQ9UPW8 1703 aa13.68□□□□□ -0.22
RBM39-230ENST00000476806 OSCARQ8IYS5 282 aa13.68□□□□□ -0.22
RBM39-230ENST00000476806 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
RBM39-230ENST00000476806 FXR2P51116 673 aaKnown RBP eCLIP13.66□□□□□ -0.22
RBM39-230ENST00000476806 CECR2Q9BXF3 1484 aa13.65□□□□□ -0.22
RBM39-230ENST00000476806 BAZ1AQ9NRL2 1556 aaPredicted RBP13.6□□□□□ -0.23
RBM39-230ENST00000476806 CC2D2AQ9P2K1 1620 aa13.57□□□□□ -0.24
RBM39-230ENST00000476806 EVX2Q03828 476 aa13.54□□□□□ -0.24
RBM39-230ENST00000476806 SUPT5HO00267 1087 aaKnown RBP13.51□□□□□ -0.25
RBM39-230ENST00000476806 FOXD4L1Q9NU39 408 aa13.51□□□□□ -0.25
RBM39-230ENST00000476806 RSF1Q96T23 1441 aaPredicted RBP13.47□□□□□ -0.25
RBM39-230ENST00000476806 SMARCA4P51532 1647 aa13.43□□□□□ -0.26
RBM39-230ENST00000476806 EIF4G1Q04637 1599 aaKnown RBP13.4□□□□□ -0.26
RBM39-230ENST00000476806 MROH2BQ7Z745 1585 aa13.37□□□□□ -0.27
RBM39-230ENST00000476806 SLC4A1APQ9BWU0 796 aaKnown RBP13.37□□□□□ -0.27
RBM39-230ENST00000476806 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
RBM39-230ENST00000476806 SMARCA2P51531 1590 aa13.35□□□□□ -0.27
RBM39-230ENST00000476806 TOP2AP11388 1531 aaKnown RBP13.3□□□□□ -0.28
RBM39-230ENST00000476806 SPDYE2BA6NHP3 402 aa13.29□□□□□ -0.28
RBM39-230ENST00000476806 SPDYE6P0CI01 402 aa13.29□□□□□ -0.28
RBM39-230ENST00000476806 PRKAR2AP13861 404 aaKnown RBP13.29□□□□□ -0.28
RBM39-230ENST00000476806 SPDYE2Q495Y8 402 aa13.29□□□□□ -0.28
RBM39-230ENST00000476806 WIZO95785 1651 aa13.25□□□□□ -0.29
RBM39-230ENST00000476806 C19orf67A6NJJ6 358 aa13.24□□□□□ -0.29
RBM39-230ENST00000476806 HMGXB3Q12766 1538 aa13.21□□□□□ -0.29
RBM39-230ENST00000476806 SPDYE1Q8NFV5 336 aaPredicted RBP13.19□□□□□ -0.3
RBM39-230ENST00000476806 CLEC11AQ9Y240 323 aa13.19□□□□□ -0.3
RBM39-230ENST00000476806 BAZ1BQ9UIG0 1483 aaKnown RBP13.18□□□□□ -0.3
RBM39-230ENST00000476806 ATAD2BQ9ULI0 1458 aa13.18□□□□□ -0.3
RBM39-230ENST00000476806 GABBR2O75899 941 aa13.18□□□□□ -0.3
RBM39-230ENST00000476806 CUX2O14529 1486 aa13.17□□□□□ -0.3
RBM39-230ENST00000476806 ZBTB22O15209 634 aa13.17□□□□□ -0.3
RBM39-230ENST00000476806 LHX8Q68G74 356 aa13.17□□□□□ -0.3
RBM39-230ENST00000476806 ATXN8OSP0DMR3 200 aa13.16□□□□□ -0.3
RBM39-230ENST00000476806 FBLN2P98095 1184 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms