RNA–Protein interactions for RNA: ENST00000554901.1

SPTLC2-203, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 1 (best)

Gene SPTLC2, Length 1,518 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-203ENST00000554901 NISCHQ9Y2I1 1504 aa39■■■■□ 3.83
SPTLC2-203ENST00000554901 CCDC180Q9P1Z9 1646 aa34.47■■■■□ 3.11
SPTLC2-203ENST00000554901 ABCC9O60706 1549 aa33.15■■■□□ 2.9
SPTLC2-203ENST00000554901 ZCCHC6Q5VYS8 1495 aaKnown RBP32.61■■■□□ 2.81
SPTLC2-203ENST00000554901 DCAF1Q9Y4B6 1507 aa32.37■■■□□ 2.77
SPTLC2-203ENST00000554901 MYO15BQ96JP2 1530 aa32.34■■■□□ 2.77
SPTLC2-203ENST00000554901 NACADO15069 1562 aa32.3■■■□□ 2.76
SPTLC2-203ENST00000554901 DCAF8L2P0C7V8 631 aa32.29■■■□□ 2.76
SPTLC2-203ENST00000554901 RB1CC1Q8TDY2 1594 aa32.2■■■□□ 2.74
SPTLC2-203ENST00000554901 SCRIBQ14160 1630 aa31.4■■■□□ 2.62
SPTLC2-203ENST00000554901 UNC13AQ9UPW8 1703 aa31.37■■■□□ 2.61
SPTLC2-203ENST00000554901 BICRAQ9NZM4 1560 aa31.15■■■□□ 2.58
SPTLC2-203ENST00000554901 PABPN1Q86U42 306 aaKnown RBP eCLIP31.04■■■□□ 2.56
SPTLC2-203ENST00000554901 SHROOM4Q9ULL8 1493 aa31.02■■■□□ 2.56
SPTLC2-203ENST00000554901 EIF4G1Q04637 1599 aaKnown RBP30.31■■■□□ 2.44
SPTLC2-203ENST00000554901 CECR2Q9BXF3 1484 aa30.27■■■□□ 2.44
SPTLC2-203ENST00000554901 BAZ1AQ9NRL2 1556 aaPredicted RBP30.22■■■□□ 2.43
SPTLC2-203ENST00000554901 SMARCA4P51532 1647 aa30.14■■■□□ 2.41
SPTLC2-203ENST00000554901 CC2D2AQ9P2K1 1620 aa30.03■■■□□ 2.4
SPTLC2-203ENST00000554901 MROH2BQ7Z745 1585 aa30.02■■■□□ 2.4
SPTLC2-203ENST00000554901 DNAJC5BQ9UF47 199 aa29.94■■■□□ 2.38
SPTLC2-203ENST00000554901 RSF1Q96T23 1441 aaPredicted RBP29.9■■■□□ 2.38
SPTLC2-203ENST00000554901 PEG3Q9GZU2 1588 aa29.89■■■□□ 2.38
SPTLC2-203ENST00000554901 SMARCA2P51531 1590 aa29.88■■■□□ 2.37
SPTLC2-203ENST00000554901 ATAD2BQ9ULI0 1458 aa29.86■■■□□ 2.37
SPTLC2-203ENST00000554901 NCAPD3P42695 1498 aa29.81■■■□□ 2.36
SPTLC2-203ENST00000554901 HMGXB3Q12766 1538 aa29.7■■■□□ 2.35
SPTLC2-203ENST00000554901 WIZO95785 1651 aa29.69■■■□□ 2.34
SPTLC2-203ENST00000554901 BAZ1BQ9UIG0 1483 aaKnown RBP29.65■■■□□ 2.34
SPTLC2-203ENST00000554901 TOP2AP11388 1531 aaKnown RBP29.48■■■□□ 2.31
SPTLC2-203ENST00000554901 SUPT5HO00267 1087 aaKnown RBP29.45■■■□□ 2.31
SPTLC2-203ENST00000554901 CCDC88BA6NC98 1476 aa29.11■■■□□ 2.25
SPTLC2-203ENST00000554901 CADPSQ9ULU8 1353 aa28.95■■■□□ 2.22
SPTLC2-203ENST00000554901 LAMC3Q9Y6N6 1575 aa28.93■■■□□ 2.22
SPTLC2-203ENST00000554901 CFTRP13569 1480 aa28.89■■■□□ 2.21
SPTLC2-203ENST00000554901 NESP48681 1621 aa28.82■■■□□ 2.2
SPTLC2-203ENST00000554901 PDS5BQ9NTI5 1447 aa28.73■■■□□ 2.19
SPTLC2-203ENST00000554901 PRDM2Q13029 1718 aa28.65■■■□□ 2.18
SPTLC2-203ENST00000554901 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
SPTLC2-203ENST00000554901 ERCC6Q03468 1493 aa28.58■■■□□ 2.17
SPTLC2-203ENST00000554901 CEP164Q9UPV0 1460 aa28.52■■■□□ 2.16
SPTLC2-203ENST00000554901 KIF21AQ7Z4S6 1674 aa28.49■■■□□ 2.15
SPTLC2-203ENST00000554901 MRC2Q9UBG0 1479 aa28.37■■■□□ 2.13
SPTLC2-203ENST00000554901 THOC2Q8NI27 1593 aaKnown RBP28.32■■■□□ 2.12
SPTLC2-203ENST00000554901 ABCC8Q09428 1581 aa28.29■■■□□ 2.12
SPTLC2-203ENST00000554901 WDR62O43379 1518 aa28.26■■■□□ 2.11
SPTLC2-203ENST00000554901 URB2Q14146 1524 aaKnown RBP28.25■■■□□ 2.11
SPTLC2-203ENST00000554901 DNMBPQ6XZF7 1577 aa28.21■■■□□ 2.11
SPTLC2-203ENST00000554901 TOPBP1Q92547 1522 aa28.19■■■□□ 2.1
SPTLC2-203ENST00000554901 WRNQ14191 1432 aaPredicted RBP eCLIP28.19■■■□□ 2.1
SPTLC2-203ENST00000554901 CUX2O14529 1486 aa28.14■■■□□ 2.1
SPTLC2-203ENST00000554901 CUX1P39880 1505 aa28.14■■■□□ 2.1
SPTLC2-203ENST00000554901 TOP2BQ02880 1626 aa28.06■■■□□ 2.08
SPTLC2-203ENST00000554901 BIVM-ERCC5R4GMW8 1640 aa28.05■■■□□ 2.08
SPTLC2-203ENST00000554901 SYNJ1O43426 1573 aa28.03■■■□□ 2.08
SPTLC2-203ENST00000554901 POLA1P09884 1462 aaPredicted RBP27.98■■■□□ 2.07
SPTLC2-203ENST00000554901 FGD5Q6ZNL6 1462 aa27.98■■■□□ 2.07
SPTLC2-203ENST00000554901 IFT140Q96RY7 1462 aa27.92■■■□□ 2.06
SPTLC2-203ENST00000554901 SOGA1O94964 1423 aa27.89■■■□□ 2.05
SPTLC2-203ENST00000554901 TRIM41Q8WV44 630 aa27.86■■■□□ 2.05
SPTLC2-203ENST00000554901 TARBP1Q13395 1621 aaKnown RBP27.83■■■□□ 2.05
SPTLC2-203ENST00000554901 CHIC1Q5VXU3 224 aa27.83■■■□□ 2.05
SPTLC2-203ENST00000554901 RAD54L2Q9Y4B4 1467 aa27.81■■■□□ 2.04
SPTLC2-203ENST00000554901 ABCA10Q8WWZ4 1543 aa27.78■■■□□ 2.04
SPTLC2-203ENST00000554901 WDR97A6NE52 1622 aa27.73■■■□□ 2.03
SPTLC2-203ENST00000554901 ZNF608Q9ULD9 1512 aaPredicted RBP27.67■■■□□ 2.02
SPTLC2-203ENST00000554901 TDRD9Q8NDG6 1382 aaKnown RBP27.63■■■□□ 2.01
SPTLC2-203ENST00000554901 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
SPTLC2-203ENST00000554901 AQRO60306 1485 aaKnown RBP eCLIP27.59■■■□□ 2.011e-8■■□□□ 11.7
SPTLC2-203ENST00000554901 ABCA5Q8WWZ7 1642 aa27.58■■■□□ 2.01
SPTLC2-203ENST00000554901 KIF27Q86VH2 1401 aa27.58■■■□□ 2.01
SPTLC2-203ENST00000554901 GAPVD1Q14C86 1478 aa27.57■■■□□ 2
SPTLC2-203ENST00000554901 GRIN2BQ13224 1484 aa27.52■■■□□ 2
SPTLC2-203ENST00000554901 ERICH3Q5RHP9 1530 aa27.46■■□□□ 1.99
SPTLC2-203ENST00000554901 EEA1Q15075 1411 aa27.44■■□□□ 1.98
SPTLC2-203ENST00000554901 PBRM1Q86U86 1689 aa27.43■■□□□ 1.98
SPTLC2-203ENST00000554901 MAGI1Q96QZ7 1491 aaPredicted RBP27.4■■□□□ 1.98
SPTLC2-203ENST00000554901 IGF1RP08069 1367 aa27.39■■□□□ 1.98
SPTLC2-203ENST00000554901 RUSC2Q8N2Y8 1516 aa27.38■■□□□ 1.97
SPTLC2-203ENST00000554901 SNAPC4Q5SXM2 1469 aa27.36■■□□□ 1.97
SPTLC2-203ENST00000554901 FHAD1B1AJZ9 1412 aa27.3■■□□□ 1.96
SPTLC2-203ENST00000554901 CUL7Q14999 1698 aa27.29■■□□□ 1.96
SPTLC2-203ENST00000554901 ADAMTS12P58397 1594 aa27.28■■□□□ 1.96
SPTLC2-203ENST00000554901 SYNJ2O15056 1496 aa27.27■■□□□ 1.96
SPTLC2-203ENST00000554901 CSRNP3Q8WYN3 585 aa27.26■■□□□ 1.96
SPTLC2-203ENST00000554901 CARMIL1Q5VZK9 1371 aa27.23■■□□□ 1.95
SPTLC2-203ENST00000554901 CHMP7Q8WUX9 453 aaPredicted RBP27.21■■□□□ 1.95
SPTLC2-203ENST00000554901 PRXQ9BXM0 1461 aa27.17■■□□□ 1.94
SPTLC2-203ENST00000554901 FAM9AQ8IZU1 332 aaPredicted RBP27.17■■□□□ 1.94
SPTLC2-203ENST00000554901 GRIN2AQ12879 1464 aa27.15■■□□□ 1.94
SPTLC2-203ENST00000554901 FBLN2P98095 1184 aa27.15■■□□□ 1.94
SPTLC2-203ENST00000554901 RAPGEF2Q9Y4G8 1499 aa27.14■■□□□ 1.93
SPTLC2-203ENST00000554901 CHD1O14646 1710 aa27.12■■□□□ 1.93
SPTLC2-203ENST00000554901 OSCARQ8IYS5 282 aa27.06■■□□□ 1.92
SPTLC2-203ENST00000554901 KIF21BO75037 1637 aa27.05■■□□□ 1.92
SPTLC2-203ENST00000554901 NUP160Q12769 1436 aa27.03■■□□□ 1.92
SPTLC2-203ENST00000554901 CEP170Q5SW79 1584 aa26.95■■□□□ 1.9
SPTLC2-203ENST00000554901 GOLGA3Q08378 1498 aa26.94■■□□□ 1.9
SPTLC2-203ENST00000554901 CLASP1Q7Z460 1538 aa26.9■■□□□ 1.9
SPTLC2-203ENST00000554901 KIAA0586Q9BVV6 1533 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms