RNA–Protein interactions for RNA: ENST00000490354.5

RBM39-235, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 436 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-235ENST00000490354 AEBP2Q6ZN18 517 aaPredicted RBP25.13■■□□□ 1.61
RBM39-235ENST00000490354 CHIC1Q5VXU3 224 aa23.82■■□□□ 1.4
RBM39-235ENST00000490354 SENP3Q9H4L4 574 aaPredicted RBP21.39■■□□□ 1.01
RBM39-235ENST00000490354 PHF23Q9BUL5 403 aaPredicted RBP21.14■□□□□ 0.97
RBM39-235ENST00000490354 FOXD1Q16676 465 aa19.97■□□□□ 0.79
RBM39-235ENST00000490354 PLPPR3Q6T4P5 718 aa19.02■□□□□ 0.64
RBM39-235ENST00000490354 PPP6R1Q9UPN7 881 aa18.68■□□□□ 0.58
RBM39-235ENST00000490354 MSH5O43196 834 aa18.66■□□□□ 0.58
RBM39-235ENST00000490354 PIAS4Q8N2W9 510 aaPredicted RBP18.65■□□□□ 0.58
RBM39-235ENST00000490354 ADRA2BP18089 450 aa18.61■□□□□ 0.57
RBM39-235ENST00000490354 POTEDQ86YR6 584 aa18.27■□□□□ 0.52
RBM39-235ENST00000490354 MAPK8IP2Q13387 824 aaPredicted RBP17.12■□□□□ 0.33
RBM39-235ENST00000490354 SCAF1Q9H7N4 1312 aaKnown RBP16.97■□□□□ 0.31
RBM39-235ENST00000490354 DMRT2Q9Y5R5 561 aa16.97■□□□□ 0.31
RBM39-235ENST00000490354 PPP4R3CPQ6ZMV5 832 aa16.68■□□□□ 0.26
RBM39-235ENST00000490354 CNKSR2Q8WXI2 1034 aa16.36■□□□□ 0.21
RBM39-235ENST00000490354 HOXD11P31277 338 aaPredicted RBP16.34■□□□□ 0.21
RBM39-235ENST00000490354 DCAF8L1A6NGE4 600 aa16.3■□□□□ 0.2
RBM39-235ENST00000490354 RNF216Q9NWF9 866 aaPredicted RBP16.21■□□□□ 0.19
RBM39-235ENST00000490354 CACNB1Q02641 598 aaPredicted RBP16.04■□□□□ 0.16
RBM39-235ENST00000490354 NCBP3Q53F19 620 aaKnown RBP16■□□□□ 0.15
RBM39-235ENST00000490354 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
RBM39-235ENST00000490354 NPM3O75607 178 aaKnown RBP15.81■□□□□ 0.12
RBM39-235ENST00000490354 DNAJC5BQ9UF47 199 aa15.74■□□□□ 0.11
RBM39-235ENST00000490354 C1QBPQ07021 282 aaKnown RBP15.68■□□□□ 0.1
RBM39-235ENST00000490354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.58■□□□□ 0.086e-19■□□□□ 10.6
RBM39-235ENST00000490354 KCNA4P22459 653 aa15.51■□□□□ 0.07
RBM39-235ENST00000490354 U3KPZ7 1027 aaPredicted RBP15.27■□□□□ 0.04
RBM39-235ENST00000490354 SLC4A2P04920 1241 aa15.11■□□□□ 0.01
RBM39-235ENST00000490354 SPINK5Q9NQ38 1064 aaPredicted RBP15.06■□□□□ 0
RBM39-235ENST00000490354 CAPN15O75808 1086 aa15.02■□□□□ -0
RBM39-235ENST00000490354 DSG3P32926 999 aa14.93□□□□□ -0.02
RBM39-235ENST00000490354 TRHP20396 242 aaPredicted RBP14.79□□□□□ -0.04
RBM39-235ENST00000490354 APLP2Q06481 763 aa14.78□□□□□ -0.04
RBM39-235ENST00000490354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.77□□□□□ -0.05
RBM39-235ENST00000490354 HNRNPUL2Q1KMD3 747 aaKnown RBP14.77□□□□□ -0.05
RBM39-235ENST00000490354 ZNF219Q9P2Y4 722 aaPredicted RBP14.72□□□□□ -0.05
RBM39-235ENST00000490354 SAMD1Q6SPF0 538 aaPredicted RBP14.7□□□□□ -0.06
RBM39-235ENST00000490354 ABCB7O75027 752 aa14.69□□□□□ -0.06
RBM39-235ENST00000490354 SLC4A1APQ9BWU0 796 aaKnown RBP14.62□□□□□ -0.07
RBM39-235ENST00000490354 MYCNP04198 464 aaPredicted RBP14.61□□□□□ -0.07
RBM39-235ENST00000490354 FOXD4L1Q9NU39 408 aa14.46□□□□□ -0.09
RBM39-235ENST00000490354 POLA2Q14181 598 aa14.37□□□□□ -0.11
RBM39-235ENST00000490354 POTEHQ6S545 545 aa14.31□□□□□ -0.12
RBM39-235ENST00000490354 ATF5Q9Y2D1 282 aaPredicted RBP14.31□□□□□ -0.12
RBM39-235ENST00000490354 ZBTB22O15209 634 aa14.27□□□□□ -0.13
RBM39-235ENST00000490354 RBM42Q9BTD8 480 aaKnown RBP14.22□□□□□ -0.13
RBM39-235ENST00000490354 ZBTB12Q9Y330 459 aaPredicted RBP14.03□□□□□ -0.16
RBM39-235ENST00000490354 ATXN8OSP0DMR3 200 aa13.98□□□□□ -0.17
RBM39-235ENST00000490354 CHRDL2Q6WN34 429 aa13.93□□□□□ -0.18
RBM39-235ENST00000490354 OSCARQ8IYS5 282 aa13.92□□□□□ -0.18
RBM39-235ENST00000490354 AKT1S1Q96B36 256 aa13.9□□□□□ -0.18
RBM39-235ENST00000490354 REM2Q8IYK8 340 aaPredicted RBP13.78□□□□□ -0.2
RBM39-235ENST00000490354 FBLN2P98095 1184 aa13.7□□□□□ -0.22
RBM39-235ENST00000490354 PITPNM1O00562 1244 aa13.64□□□□□ -0.23
RBM39-235ENST00000490354 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
RBM39-235ENST00000490354 SPDYE2BA6NHP3 402 aa13.62□□□□□ -0.23
RBM39-235ENST00000490354 SPDYE6P0CI01 402 aa13.62□□□□□ -0.23
RBM39-235ENST00000490354 SPDYE2Q495Y8 402 aa13.62□□□□□ -0.23
RBM39-235ENST00000490354 PIP4P2Q8N4L2 257 aa13.6□□□□□ -0.23
RBM39-235ENST00000490354 CSRNP3Q8WYN3 585 aa13.59□□□□□ -0.23
RBM39-235ENST00000490354 FXR2P51116 673 aaKnown RBP eCLIP13.52□□□□□ -0.25
RBM39-235ENST00000490354 ZNF692Q9BU19 519 aaPredicted RBP13.48□□□□□ -0.25
RBM39-235ENST00000490354 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
RBM39-235ENST00000490354 EHMT2Q96KQ7 1210 aa13.42□□□□□ -0.26
RBM39-235ENST00000490354 SP7Q8TDD2 431 aaPredicted RBP13.41□□□□□ -0.26
RBM39-235ENST00000490354 CLEC11AQ9Y240 323 aa13.4□□□□□ -0.26
RBM39-235ENST00000490354 SPDYE1Q8NFV5 336 aaPredicted RBP13.39□□□□□ -0.27
RBM39-235ENST00000490354 HAX1O00165 279 aa13.36□□□□□ -0.27
RBM39-235ENST00000490354 PRKAR2AP13861 404 aaKnown RBP13.29□□□□□ -0.28
RBM39-235ENST00000490354 PABPN1Q86U42 306 aaKnown RBP eCLIP13.28□□□□□ -0.285e-16■□□□□ 10.7
RBM39-235ENST00000490354 EVX2Q03828 476 aa13.22□□□□□ -0.29
RBM39-235ENST00000490354 CHADLQ6NUI6 762 aa13.17□□□□□ -0.3
RBM39-235ENST00000490354 PRR29P0C7W0 189 aa13.16□□□□□ -0.3
RBM39-235ENST00000490354 C19orf67A6NJJ6 358 aa13.08□□□□□ -0.32
RBM39-235ENST00000490354 SPDYE4A6NLX3 237 aa12.97□□□□□ -0.33
RBM39-235ENST00000490354 FARP1Q9Y4F1 1045 aaPredicted RBP12.93□□□□□ -0.34
RBM39-235ENST00000490354 GABBR2O75899 941 aa12.91□□□□□ -0.34
RBM39-235ENST00000490354 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
RBM39-235ENST00000490354 CD44P16070 742 aaKnown RBP12.87□□□□□ -0.35
RBM39-235ENST00000490354 CREBZFQ9NS37 354 aa12.84□□□□□ -0.35
RBM39-235ENST00000490354 ZRANB1Q9UGI0 708 aa12.69□□□□□ -0.38
RBM39-235ENST00000490354 POTEIP0CG38 1075 aa12.65□□□□□ -0.38
RBM39-235ENST00000490354 ZNF579Q8NAF0 562 aaKnown RBP12.65□□□□□ -0.38
RBM39-235ENST00000490354 CLCN6P51797 869 aa12.64□□□□□ -0.39
RBM39-235ENST00000490354 PROM2Q8N271 834 aa12.64□□□□□ -0.39
RBM39-235ENST00000490354 MNX1P50219 401 aaPredicted RBP12.62□□□□□ -0.39
RBM39-235ENST00000490354 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.4
RBM39-235ENST00000490354 LHX8Q68G74 356 aa12.58□□□□□ -0.4
RBM39-235ENST00000490354 PAK3O75914 559 aaPredicted RBP12.55□□□□□ -0.4
RBM39-235ENST00000490354 DCBLD2Q96PD2 775 aa12.54□□□□□ -0.4
RBM39-235ENST00000490354 GALR2O43603 387 aaPredicted RBP12.53□□□□□ -0.4
RBM39-235ENST00000490354 PHF12Q96QT6 1004 aa12.52□□□□□ -0.41
RBM39-235ENST00000490354 TSPYL2Q9H2G4 693 aaPredicted RBP12.39□□□□□ -0.43
RBM39-235ENST00000490354 MIER1Q8N108 512 aa12.38□□□□□ -0.43
RBM39-235ENST00000490354 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
RBM39-235ENST00000490354 PLEKHG5O94827 1062 aa12.34□□□□□ -0.43
RBM39-235ENST00000490354 FKBP8Q14318 412 aa12.33□□□□□ -0.44
RBM39-235ENST00000490354 CCDC61Q9Y6R9 512 aa12.32□□□□□ -0.44
RBM39-235ENST00000490354 PELP1Q8IZL8 1130 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms