RNA–Protein interactions for RNA: ENST00000363925.1

RNU4-1-201, Transcript of RNA, U4 small nuclear 1, humanhuman

BASIC

Gene RNU4-1, Length 141 nt, Biotype snRNA, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-1-201ENST00000363925 AEBP2Q6ZN18 517 aaPredicted RBP17.87■□□□□ 0.45
RNU4-1-201ENST00000363925 CHIC1Q5VXU3 224 aa17.52■□□□□ 0.4
RNU4-1-201ENST00000363925 PHF23Q9BUL5 403 aaPredicted RBP15.38■□□□□ 0.05
RNU4-1-201ENST00000363925 SENP3Q9H4L4 574 aaPredicted RBP15.21■□□□□ 0.03
RNU4-1-201ENST00000363925 PLPPR3Q6T4P5 718 aa14.29□□□□□ -0.12
RNU4-1-201ENST00000363925 FOXD1Q16676 465 aa14.09□□□□□ -0.15
RNU4-1-201ENST00000363925 ADRA2BP18089 450 aa13.64□□□□□ -0.23
RNU4-1-201ENST00000363925 PPP6R1Q9UPN7 881 aa13.58□□□□□ -0.24
RNU4-1-201ENST00000363925 PIAS4Q8N2W9 510 aaPredicted RBP13.39□□□□□ -0.27
RNU4-1-201ENST00000363925 MSH5O43196 834 aa13□□□□□ -0.33
RNU4-1-201ENST00000363925 PPP4R3CPQ6ZMV5 832 aa12.63□□□□□ -0.39
RNU4-1-201ENST00000363925 SCAF1Q9H7N4 1312 aaKnown RBP12.51□□□□□ -0.41
RNU4-1-201ENST00000363925 KCNA4P22459 653 aa12.38□□□□□ -0.43
RNU4-1-201ENST00000363925 MAPK8IP2Q13387 824 aaPredicted RBP12.35□□□□□ -0.43
RNU4-1-201ENST00000363925 NCBP3Q53F19 620 aaKnown RBP12.34□□□□□ -0.43
RNU4-1-201ENST00000363925 CNKSR2Q8WXI2 1034 aa12.24□□□□□ -0.45
RNU4-1-201ENST00000363925 DMRT2Q9Y5R5 561 aa12.11□□□□□ -0.47
RNU4-1-201ENST00000363925 NPM3O75607 178 aaKnown RBP12.09□□□□□ -0.47
RNU4-1-201ENST00000363925 RNF216Q9NWF9 866 aaPredicted RBP11.95□□□□□ -0.5
RNU4-1-201ENST00000363925 HOXD11P31277 338 aaPredicted RBP11.85□□□□□ -0.51
RNU4-1-201ENST00000363925 SLC4A1APQ9BWU0 796 aaKnown RBP11.85□□□□□ -0.51
RNU4-1-201ENST00000363925 DCAF8L1A6NGE4 600 aa11.81□□□□□ -0.52
RNU4-1-201ENST00000363925 POTEDQ86YR6 584 aa11.74□□□□□ -0.53
RNU4-1-201ENST00000363925 EHMT2Q96KQ7 1210 aa11.65□□□□□ -0.54
RNU4-1-201ENST00000363925 DNAJC5BQ9UF47 199 aa11.53□□□□□ -0.56
RNU4-1-201ENST00000363925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.46□□□□□ -0.57
RNU4-1-201ENST00000363925 FOXD4L1Q9NU39 408 aa11.38□□□□□ -0.59
RNU4-1-201ENST00000363925 SLC4A2P04920 1241 aa11.37□□□□□ -0.59
RNU4-1-201ENST00000363925 CSRNP3Q8WYN3 585 aa11.34□□□□□ -0.59
RNU4-1-201ENST00000363925 ZBTB22O15209 634 aa11.33□□□□□ -0.6
RNU4-1-201ENST00000363925 MYCNP04198 464 aaPredicted RBP11.21□□□□□ -0.61
RNU4-1-201ENST00000363925 U3KPZ7 1027 aaPredicted RBP11.17□□□□□ -0.62
RNU4-1-201ENST00000363925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.09□□□□□ -0.63
RNU4-1-201ENST00000363925 HNRNPUL2Q1KMD3 747 aaKnown RBP11.09□□□□□ -0.63
RNU4-1-201ENST00000363925 RNF39Q9H2S5 420 aa11.09□□□□□ -0.63
RNU4-1-201ENST00000363925 SAMD1Q6SPF0 538 aaPredicted RBP11.04□□□□□ -0.64
RNU4-1-201ENST00000363925 APLP2Q06481 763 aa11.01□□□□□ -0.65
RNU4-1-201ENST00000363925 C1QBPQ07021 282 aaKnown RBP10.98□□□□□ -0.65
RNU4-1-201ENST00000363925 CAPN15O75808 1086 aa10.93□□□□□ -0.66
RNU4-1-201ENST00000363925 ATXN8OSP0DMR3 200 aa10.91□□□□□ -0.66
RNU4-1-201ENST00000363925 CACNB1Q02641 598 aaPredicted RBP10.91□□□□□ -0.66
RNU4-1-201ENST00000363925 TRHP20396 242 aaPredicted RBP10.9□□□□□ -0.66
RNU4-1-201ENST00000363925 SPINK5Q9NQ38 1064 aaPredicted RBP10.88□□□□□ -0.67
RNU4-1-201ENST00000363925 ATF5Q9Y2D1 282 aaPredicted RBP10.87□□□□□ -0.67
RNU4-1-201ENST00000363925 ZNF219Q9P2Y4 722 aaPredicted RBP10.81□□□□□ -0.68
RNU4-1-201ENST00000363925 ABCB7O75027 752 aa10.73□□□□□ -0.69
RNU4-1-201ENST00000363925 POLA2Q14181 598 aa10.66□□□□□ -0.7
RNU4-1-201ENST00000363925 DSG3P32926 999 aa10.59□□□□□ -0.71
RNU4-1-201ENST00000363925 FBLN2P98095 1184 aa10.51□□□□□ -0.73
RNU4-1-201ENST00000363925 ZBTB12Q9Y330 459 aaPredicted RBP10.47□□□□□ -0.73
RNU4-1-201ENST00000363925 MKRN4PQ13434 485 aaPredicted RBP10.38□□□□□ -0.75
RNU4-1-201ENST00000363925 FKBP8Q14318 412 aa10.35□□□□□ -0.75
RNU4-1-201ENST00000363925 OSCARQ8IYS5 282 aa10.3□□□□□ -0.76
RNU4-1-201ENST00000363925 SPDYE4A6NLX3 237 aa10.26□□□□□ -0.77
RNU4-1-201ENST00000363925 ZNF692Q9BU19 519 aaPredicted RBP10.21□□□□□ -0.77
RNU4-1-201ENST00000363925 SPDYE2BA6NHP3 402 aa10.17□□□□□ -0.78
RNU4-1-201ENST00000363925 SPDYE6P0CI01 402 aa10.17□□□□□ -0.78
RNU4-1-201ENST00000363925 SPDYE2Q495Y8 402 aa10.17□□□□□ -0.78
RNU4-1-201ENST00000363925 RBM42Q9BTD8 480 aaKnown RBP10.16□□□□□ -0.78
RNU4-1-201ENST00000363925 PABPN1Q86U42 306 aaKnown RBP eCLIP10.06□□□□□ -0.8
RNU4-1-201ENST00000363925 SSUH2Q9Y2M2 353 aa10.04□□□□□ -0.8
RNU4-1-201ENST00000363925 AKT1S1Q96B36 256 aa10.01□□□□□ -0.81
RNU4-1-201ENST00000363925 CLEC11AQ9Y240 323 aa9.96□□□□□ -0.82
RNU4-1-201ENST00000363925 FBXO3Q9UK99 471 aa9.94□□□□□ -0.82
RNU4-1-201ENST00000363925 REM2Q8IYK8 340 aaPredicted RBP9.92□□□□□ -0.82
RNU4-1-201ENST00000363925 PROM2Q8N271 834 aa9.92□□□□□ -0.82
RNU4-1-201ENST00000363925 SPDYE1Q8NFV5 336 aaPredicted RBP9.9□□□□□ -0.82
RNU4-1-201ENST00000363925 STAG3Q9UJ98 1225 aa9.89□□□□□ -0.83
RNU4-1-201ENST00000363925 PITPNM1O00562 1244 aa9.82□□□□□ -0.84
RNU4-1-201ENST00000363925 PRR29P0C7W0 189 aa9.81□□□□□ -0.84
RNU4-1-201ENST00000363925 PLCD3Q8N3E9 789 aa9.8□□□□□ -0.84
RNU4-1-201ENST00000363925 VASPP50552 380 aaPredicted RBP9.78□□□□□ -0.84
RNU4-1-201ENST00000363925 MIER1Q8N108 512 aa9.78□□□□□ -0.84
RNU4-1-201ENST00000363925 PLEKHG5O94827 1062 aa9.77□□□□□ -0.85
RNU4-1-201ENST00000363925 KLHL34Q8N239 644 aa9.74□□□□□ -0.85
RNU4-1-201ENST00000363925 CHRDL2Q6WN34 429 aa9.7□□□□□ -0.86
RNU4-1-201ENST00000363925 CHADLQ6NUI6 762 aa9.65□□□□□ -0.86
RNU4-1-201ENST00000363925 PRKAR2AP13861 404 aaKnown RBP9.62□□□□□ -0.87
RNU4-1-201ENST00000363925 IFNLR1Q8IU57 520 aaPredicted RBP9.62□□□□□ -0.87
RNU4-1-201ENST00000363925 ZBTB47Q9UFB7 747 aaPredicted RBP9.61□□□□□ -0.87
RNU4-1-201ENST00000363925 CREBZFQ9NS37 354 aa9.6□□□□□ -0.87
RNU4-1-201ENST00000363925 PIP4P2Q8N4L2 257 aa9.58□□□□□ -0.88
RNU4-1-201ENST00000363925 FXR2P51116 673 aaKnown RBP eCLIP9.56□□□□□ -0.88
RNU4-1-201ENST00000363925 SPOCK2Q92563 424 aa9.56□□□□□ -0.88
RNU4-1-201ENST00000363925 NPM1P06748 294 aaKnown RBP eCLIP9.53□□□□□ -0.88
RNU4-1-201ENST00000363925 FARP1Q9Y4F1 1045 aaPredicted RBP9.5□□□□□ -0.89
RNU4-1-201ENST00000363925 AMER1Q5JTC6 1135 aaPredicted RBP9.49□□□□□ -0.89
RNU4-1-201ENST00000363925 CIZ1Q9ULV3 898 aaPredicted RBP9.49□□□□□ -0.89
RNU4-1-201ENST00000363925 DCAF8Q5TAQ9 597 aa9.46□□□□□ -0.9
RNU4-1-201ENST00000363925 RTN4Q9NQC3 1192 aaKnown RBP9.45□□□□□ -0.9
RNU4-1-201ENST00000363925 MNX1P50219 401 aaPredicted RBP9.44□□□□□ -0.9
RNU4-1-201ENST00000363925 FAM212AQ96EL1 285 aa9.42□□□□□ -0.9
RNU4-1-201ENST00000363925 TSPYL2Q9H2G4 693 aaPredicted RBP9.42□□□□□ -0.9
RNU4-1-201ENST00000363925 PAK3O75914 559 aaPredicted RBP9.41□□□□□ -0.9
RNU4-1-201ENST00000363925 NUBP1P53384 320 aa9.4□□□□□ -0.9
RNU4-1-201ENST00000363925 RASEFQ8IZ41 740 aa9.39□□□□□ -0.91
RNU4-1-201ENST00000363925 GSE1Q14687 1217 aa9.38□□□□□ -0.91
RNU4-1-201ENST00000363925 DCAF8L2P0C7V8 631 aa9.37□□□□□ -0.91
RNU4-1-201ENST00000363925 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
RNU4-1-201ENST00000363925 HAX1O00165 279 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms