RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W MTC1P47018 478 aaKnown RBP15.15■□□□□ 0.02
CAF40YNL288W DRS1P32892 752 aaKnown RBP14.66□□□□□ -0.06
CAF40YNL288W FAP1P53971 965 aa13.15□□□□□ -0.3
CAF40YNL288W DIP2Q12220 943 aaPredicted RBP12.67□□□□□ -0.38
CAF40YNL288W PRI1P10363 409 aa12.49□□□□□ -0.41
CAF40YNL288W ISW2Q08773 1120 aa12.49□□□□□ -0.41
CAF40YNL288W BFR2Q06631 534 aaKnown RBP12.43□□□□□ -0.42
CAF40YNL288W AAD16Q02895 342 aa12.38□□□□□ -0.43
CAF40YNL288W RPG1P38249 964 aaKnown RBP12.32□□□□□ -0.44
CAF40YNL288W PRY3P47033 881 aa12.31□□□□□ -0.44
CAF40YNL288W AVT3P36062 692 aa12.3□□□□□ -0.44
CAF40YNL288W RSE1Q04693 1361 aaKnown RBP12.13□□□□□ -0.47
CAF40YNL288W TSR3Q12094 313 aaKnown RBP11.85□□□□□ -0.51
CAF40YNL288W MON2P48563 1636 aaPredicted RBP11.74□□□□□ -0.53
CAF40YNL288W RPL17AP05740 184 aaKnown RBP11.71□□□□□ -0.53
CAF40YNL288W RPL17BP46990 184 aaKnown RBP11.71□□□□□ -0.53
CAF40YNL288W INO80P53115 1489 aa11.65□□□□□ -0.54
CAF40YNL288W REB1P21538 810 aa11.64□□□□□ -0.55
CAF40YNL288W HAA1Q12753 694 aaKnown RBP11.57□□□□□ -0.56
CAF40YNL288W YCK3P39962 524 aa11.54□□□□□ -0.56
CAF40YNL288W SGS1P35187 1447 aa11.52□□□□□ -0.56
CAF40YNL288W TCB3Q03640 1545 aaKnown RBP11.5□□□□□ -0.57
CAF40YNL288W MRPL32P25348 183 aa11.42□□□□□ -0.58
CAF40YNL288W TY1B-DR4Q07793 1604 aa11.38□□□□□ -0.59
CAF40YNL288W SWR1Q05471 1514 aa11.31□□□□□ -0.6
CAF40YNL288W TFA1P36100 482 aa11.25□□□□□ -0.61
CAF40YNL288W SPT21P35209 758 aa11.18□□□□□ -0.62
CAF40YNL288W DNA2P38859 1522 aa11.12□□□□□ -0.63
CAF40YNL288W HSL1P34244 1518 aa11.09□□□□□ -0.63
CAF40YNL288W KOG1P38873 1557 aa11.07□□□□□ -0.64
CAF40YNL288W SPT6P23615 1451 aaKnown RBP11.06□□□□□ -0.64
CAF40YNL288W SPA2P23201 1466 aaKnown RBP10.97□□□□□ -0.65
CAF40YNL288W YKR023WP36119 530 aaKnown RBP10.95□□□□□ -0.66
CAF40YNL288W RIM101P33400 625 aa10.91□□□□□ -0.66
CAF40YNL288W CDC27P38042 758 aa10.87□□□□□ -0.67
CAF40YNL288W HIR3P47171 1648 aa10.85□□□□□ -0.67
CAF40YNL288W YGL015CP33199 130 aa10.81□□□□□ -0.68
CAF40YNL288W SSN2P38931 1420 aa10.81□□□□□ -0.68
CAF40YNL288W HOP09932 586 aa10.76□□□□□ -0.69
CAF40YNL288W TFC8Q12308 588 aa10.75□□□□□ -0.69
CAF40YNL288W XRN1P22147 1528 aaKnown RBP10.69□□□□□ -0.7
CAF40YNL288W DCD1P06773 312 aa10.68□□□□□ -0.7
CAF40YNL288W THO2P53552 1597 aaKnown RBP10.68□□□□□ -0.7
CAF40YNL288W BUD4P47136 1447 aa10.64□□□□□ -0.71
CAF40YNL288W ECM5Q03214 1411 aa10.61□□□□□ -0.71
CAF40YNL288W REV3P14284 1504 aa10.55□□□□□ -0.72
CAF40YNL288W OXP1P28273 1286 aa10.55□□□□□ -0.72
CAF40YNL288W UBP10P53874 792 aaPredicted RBP10.53□□□□□ -0.72
CAF40YNL288W MDS3P53094 1487 aa10.5□□□□□ -0.73
CAF40YNL288W MAP2P38174 421 aaKnown RBP10.5□□□□□ -0.73
CAF40YNL288W SIN3P22579 1536 aa10.48□□□□□ -0.73
CAF40YNL288W YIL055CP40523 627 aaKnown RBP10.48□□□□□ -0.73
CAF40YNL288W PTP3P40048 928 aa10.44□□□□□ -0.74
CAF40YNL288W ATG2P53855 1592 aa10.43□□□□□ -0.74
CAF40YNL288W PEP1P32319 1579 aa10.43□□□□□ -0.74
CAF40YNL288W BCH2P36122 765 aa10.42□□□□□ -0.74
CAF40YNL288W SCY1P53009 804 aa10.39□□□□□ -0.75
CAF40YNL288W SSK2P53599 1579 aa10.39□□□□□ -0.75
CAF40YNL288W YAH1Q12184 172 aaKnown RBP10.37□□□□□ -0.75
CAF40YNL288W TAF2P23255 1407 aa10.33□□□□□ -0.76
CAF40YNL288W ESP1Q03018 1630 aa10.29□□□□□ -0.76
CAF40YNL288W SKI3P17883 1432 aaKnown RBP10.28□□□□□ -0.76
CAF40YNL288W RSM7P47150 247 aa10.28□□□□□ -0.76
CAF40YNL288W MYO2P19524 1574 aaKnown RBP10.25□□□□□ -0.77
CAF40YNL288W SLX5P32828 619 aaKnown RBP10.24□□□□□ -0.77
CAF40YNL288W EPS1P40557 701 aa10.21□□□□□ -0.77
CAF40YNL288W YPK9Q12697 1472 aa10.19□□□□□ -0.78
CAF40YNL288W SSP1P38871 571 aa10.19□□□□□ -0.78
CAF40YNL288W BPT1P14772 1559 aa10.18□□□□□ -0.78
CAF40YNL288W YLR271WQ06152 274 aa10.16□□□□□ -0.78
CAF40YNL288W BBC1P47068 1157 aa10.15□□□□□ -0.78
CAF40YNL288W AI2P03876 854 aa10.14□□□□□ -0.79
CAF40YNL288W BDF1P35817 686 aa10.14□□□□□ -0.79
CAF40YNL288W TIF4632P39936 914 aaKnown RBP10.14□□□□□ -0.79
CAF40YNL288W SCC2Q04002 1493 aa10.12□□□□□ -0.79
CAF40YNL288W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.12□□□□□ -0.79not detected
CAF40YNL288W UFD4P33202 1483 aa10.09□□□□□ -0.79
CAF40YNL288W RPO31P04051 1460 aa10.07□□□□□ -0.8
CAF40YNL288W YCF1P39109 1515 aaKnown RBP10.04□□□□□ -0.8
CAF40YNL288W TGL3P40308 642 aa10.04□□□□□ -0.8
CAF40YNL288W POL1P13382 1468 aa9.98□□□□□ -0.81
CAF40YNL288W PSD2P53037 1138 aaKnown RBP9.96□□□□□ -0.82
CAF40YNL288W TOP2P06786 1428 aaKnown RBP9.95□□□□□ -0.82
CAF40YNL288W RKR1Q04781 1562 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-LR1P0C2J3 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-FP0CX63 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-GR2P0CX64 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-CP25384 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-DR2Q03494 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY1B-DR1Q03855 1755 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-DR3Q07791 1770 aaKnown RBP9.93□□□□□ -0.82
CAF40YNL288W TY2B-OR1Q12113 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-DR1Q12472 1770 aa9.93□□□□□ -0.82
CAF40YNL288W TY2B-OR2Q12501 1770 aa9.93□□□□□ -0.82
CAF40YNL288W CDC25P04821 1589 aa9.91□□□□□ -0.82
CAF40YNL288W MGA2P40578 1113 aa9.9□□□□□ -0.82
CAF40YNL288W CHD1P32657 1468 aa9.9□□□□□ -0.83
CAF40YNL288W STU1P38198 1513 aa9.87□□□□□ -0.83
CAF40YNL288W YOR1P53049 1477 aa9.87□□□□□ -0.83
CAF40YNL288W SMC4Q12267 1418 aa9.86□□□□□ -0.83
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms