Protein–RNA interactions for Protein: Q04781

RKR1, E3 ubiquitin-protein ligase listerin, yeastyeast

Predictions only

Length 1,562 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RKR1Q04781 YML009W-BYML009W-B 477 nt33.41■■■□□ 2.94
RKR1Q04781 NOP1YDL014W 984 nt32.2■■■□□ 2.75
RKR1Q04781 NSR1YGR159C 1245 nt32.11■■■□□ 2.73
RKR1Q04781 YKL036CYKL036C 393 nt30.62■■■□□ 2.49
RKR1Q04781 YJL027CYJL027C 417 nt28.7■■■□□ 2.18
RKR1Q04781 Q0297Q0297 156 nt28.58■■■□□ 2.17
RKR1Q04781 MDJ1YFL016C 1536 nt28.45■■■□□ 2.15
RKR1Q04781 SRX1YKL086W 384 nt28.42■■■□□ 2.14
RKR1Q04781 SCS3YGL126W 1143 nt28.41■■■□□ 2.14
RKR1Q04781 YCR051WYCR051W 669 nt27.09■■□□□ 1.93
RKR1Q04781 YOL085CYOL085C 342 nt26.41■■□□□ 1.82
RKR1Q04781 PKP1YIL042C 1185 nt26.24■■□□□ 1.79
RKR1Q04781 SCJ1YMR214W 1134 nt26.01■■□□□ 1.75
RKR1Q04781 RPP1BYDL130W 321 nt25.65■■□□□ 1.7
RKR1Q04781 TRN1tP(UGG)A 72 nt25.44■■□□□ 1.66
RKR1Q04781 SUF9tP(UGG)F 72 nt25.44■■□□□ 1.66
RKR1Q04781 SUF8tP(UGG)H 72 nt25.44■■□□□ 1.66
RKR1Q04781 tP(UGG)LtP(UGG)L 72 nt25.44■■□□□ 1.66
RKR1Q04781 SUF7tP(UGG)M 72 nt25.44■■□□□ 1.66
RKR1Q04781 tP(UGG)N1tP(UGG)N1 72 nt25.44■■□□□ 1.66
RKR1Q04781 tP(UGG)N2tP(UGG)N2 72 nt25.44■■□□□ 1.66
RKR1Q04781 tP(UGG)O1tP(UGG)O1 72 nt25.44■■□□□ 1.66
RKR1Q04781 SUF11tP(UGG)O2 72 nt25.44■■□□□ 1.66
RKR1Q04781 ATS1YAL020C 1002 nt25.39■■□□□ 1.65
RKR1Q04781 DBP2YNL112W 1641 nt25.3■■□□□ 1.64
RKR1Q04781 CCC1YLR220W 969 nt25.13■■□□□ 1.61
RKR1Q04781 PET122YER153C 765 nt24.69■■□□□ 1.54
RKR1Q04781 SCR1SCR1 522 nt24.33■■□□□ 1.49
RKR1Q04781 tP(UGG)O3tP(UGG)O3 72 nt24.17■■□□□ 1.46
RKR1Q04781 RTC3YHR087W 336 nt23.93■■□□□ 1.42
RKR1Q04781 RRN5YLR141W 1092 nt23.82■■□□□ 1.4
RKR1Q04781 RVS167YDR388W 1449 nt23.73■■□□□ 1.39
RKR1Q04781 RSB1YOR049C 1065 nt23.69■■□□□ 1.38
RKR1Q04781 YBR190WYBR190W 312 nt23.66■■□□□ 1.38
RKR1Q04781 YER088W-BYER088W-B 147 nt23.4■■□□□ 1.34
RKR1Q04781 PST2YDR032C 597 nt23.31■■□□□ 1.32
RKR1Q04781 YDJ1YNL064C 1230 nt23.21■■□□□ 1.31
RKR1Q04781 SHR5YOL110W 714 nt23.14■■□□□ 1.29
RKR1Q04781 YKL097CYKL097C 411 nt23.11■■□□□ 1.29
RKR1Q04781 GAR1YHR089C 618 nt22.78■■□□□ 1.24
RKR1Q04781 DEP1YAL013W 1218 nt22.5■■□□□ 1.19
RKR1Q04781 SHU1YHL006C 453 nt22.44■■□□□ 1.18
RKR1Q04781 URN1YPR152C 1398 nt22.2■■□□□ 1.15
RKR1Q04781 YOR139CYOR139C 393 nt22.05■■□□□ 1.12
RKR1Q04781 YAL037C-BYAL037C-B 975 nt22■■□□□ 1.11
RKR1Q04781 TIR1YER011W 765 nt21.95■■□□□ 1.1
RKR1Q04781 YNL208WYNL208W 600 nt21.87■■□□□ 1.09
RKR1Q04781 RPN10YHR200W 807 nt21.79■■□□□ 1.08
RKR1Q04781 SRB2YHR041C 633 nt21.67■■□□□ 1.06
RKR1Q04781 SSA1YAL005C 1929 nt21.61■■□□□ 1.05
RKR1Q04781 NPL3YDR432W 1245 nt21.6■■□□□ 1.05
RKR1Q04781 OPI9YLR338W 858 nt21.57■■□□□ 1.04
RKR1Q04781 MNP1YGL068W 585 nt21.53■■□□□ 1.04
RKR1Q04781 SAH1YER043C 1350 nt21.44■■□□□ 1.02
RKR1Q04781 WWM1YFL010C 636 nt21.25■□□□□ 0.99
RKR1Q04781 YJR120WYJR120W 351 nt21.23■□□□□ 0.99
RKR1Q04781 HOM6YJR139C 1080 nt21.21■□□□□ 0.99
RKR1Q04781 YGR021WYGR021W 873 nt21.12■□□□□ 0.97
RKR1Q04781 PUT4YOR348C 1884 nt21.11■□□□□ 0.97
RKR1Q04781 YJR018WYJR018W 363 nt21.1■□□□□ 0.97
RKR1Q04781 YOL037CYOL037C 354 nt21.1■□□□□ 0.97
RKR1Q04781 ARE1YCR048W 1833 nt21.03■□□□□ 0.96
RKR1Q04781 YHR049C-AYHR049C-A 297 nt20.96■□□□□ 0.95
RKR1Q04781 PUN1YLR414C 792 nt20.91■□□□□ 0.94
RKR1Q04781 RKM5YLR137W 1104 nt20.88■□□□□ 0.93
RKR1Q04781 tM(CAU)CtM(CAU)C 72 nt20.87■□□□□ 0.93
RKR1Q04781 IMT4tM(CAU)E 72 nt20.87■□□□□ 0.93
RKR1Q04781 IMT3tM(CAU)J3 72 nt20.87■□□□□ 0.93
RKR1Q04781 IMT1tM(CAU)O1 72 nt20.87■□□□□ 0.93
RKR1Q04781 IMT2tM(CAU)P 72 nt20.87■□□□□ 0.93
RKR1Q04781 RPP2BYDR382W 333 nt20.76■□□□□ 0.91
RKR1Q04781 SSA3YBL075C 1950 nt20.73■□□□□ 0.91
RKR1Q04781 YFL021C-AYFL021C-A 855 nt20.72■□□□□ 0.91
RKR1Q04781 MOT3YMR070W 1473 nt20.7■□□□□ 0.9
RKR1Q04781 BSC6YOL137W 1494 nt20.67■□□□□ 0.9
RKR1Q04781 PTC2YER089C 1395 nt20.59■□□□□ 0.89
RKR1Q04781 BDH2YAL061W 1254 nt20.56■□□□□ 0.88
RKR1Q04781 PUS2YGL063W 1113 nt20.55■□□□□ 0.88
RKR1Q04781 POA1YBR022W 534 nt20.54■□□□□ 0.88
RKR1Q04781 YLR281CYLR281C 468 nt20.45■□□□□ 0.86
RKR1Q04781 BUD23YCR047C 828 nt20.42■□□□□ 0.86
RKR1Q04781 WHI5YOR083W 888 nt20.35■□□□□ 0.85
RKR1Q04781 FIS1YIL065C 468 nt20.33■□□□□ 0.84
RKR1Q04781 YBL100CYBL100C 315 nt20.28■□□□□ 0.84
RKR1Q04781 YLR236CYLR236C 324 nt20.25■□□□□ 0.83
RKR1Q04781 FMP45YDL222C 930 nt20.17■□□□□ 0.82
RKR1Q04781 NAB2YGL122C 1578 nt20.17■□□□□ 0.82
RKR1Q04781 FPR4YLR449W 1179 nt20.15■□□□□ 0.82
RKR1Q04781 LSM3YLR438C-A 270 nt20.13■□□□□ 0.81
RKR1Q04781 YPR011CYPR011C 981 nt20.12■□□□□ 0.81
RKR1Q04781 PHO4YFR034C 939 nt20.11■□□□□ 0.81
RKR1Q04781 DAL1YIR027C 1383 nt20.06■□□□□ 0.8
RKR1Q04781 DSK2YMR276W 1122 nt20.04■□□□□ 0.8
RKR1Q04781 MRPL8YJL063C 717 nt20■□□□□ 0.79
RKR1Q04781 INM2YDR287W 879 nt20■□□□□ 0.79
RKR1Q04781 UBX6YJL048C 1191 nt19.95■□□□□ 0.78
RKR1Q04781 FUN26YAL022C 1554 nt19.94■□□□□ 0.78
RKR1Q04781 YLR154C-GYLR154C-G 150 nt19.92■□□□□ 0.78
RKR1Q04781 TRM9YML014W 840 nt19.88■□□□□ 0.77
RKR1Q04781 LPX1YOR084W 1164 nt19.8■□□□□ 0.76
Retrieved 100 of 7,029 protein–RNA pairs in 11.7 ms