Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MCM7-209ENST00000485286 2900 ntTSL 217.91■□□□□ 0.463e-10■■■□□ 14.6
YBX3P16989 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.83■□□□□ 0.453e-10■■■□□ 14.6
YBX3P16989 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.09■□□□□ 0.333e-10■■■□□ 14.6
YBX3P16989 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC12.95□□□□□ -0.343e-10■■■□□ 14.6
YBX3P16989 MCM7-201ENST00000303887 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.443e-10■■■□□ 14.6
YBX3P16989 MCM7-210ENST00000489841 2515 ntTSL 1 (best)10.28□□□□□ -0.763e-10■■■□□ 14.6
YBX3P16989 CALR-202ENST00000586760 913 ntTSL 216.21■□□□□ 0.197e-26■■■□□ 14.6
YBX3P16989 GTF3A-203ENST00000435781 688 ntTSL 527.07■■□□□ 1.921e-8■■■□□ 14.6
YBX3P16989 GTF3A-205ENST00000466776 461 ntTSL 516.39■□□□□ 0.211e-8■■■□□ 14.6
YBX3P16989 MGAT4B-220ENST00000522451 583 ntTSL 225.29■■□□□ 1.642e-8■■■□□ 14.6
YBX3P16989 HDDC3-206ENST00000561036 457 ntTSL 319.56■□□□□ 0.722e-8■■■□□ 14.6
YBX3P16989 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-8■■■□□ 14.6
YBX3P16989 HDDC3-204ENST00000559834 1076 ntTSL 212.64□□□□□ -0.392e-8■■■□□ 14.6
YBX3P16989 ARRDC3-206ENST00000511391 821 ntTSL 29.02□□□□□ -0.972e-8■■■□□ 14.6
YBX3P16989 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.234e-6■■■□□ 14.6
YBX3P16989 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC24.53■■□□□ 1.529e-7■■■□□ 14.6
YBX3P16989 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.719e-7■■■□□ 14.6
YBX3P16989 TBCB-202ENST00000392178 791 ntTSL 231.67■■■□□ 2.665e-6■■■□□ 14.6
YBX3P16989 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.615e-6■■■□□ 14.6
YBX3P16989 TBCB-211ENST00000589996 724 ntTSL 3 BASIC19.52■□□□□ 0.725e-6■■■□□ 14.6
YBX3P16989 ALDH18A1-204ENST00000485428 726 ntTSL 210.14□□□□□ -0.797e-10■■■□□ 14.6
YBX3P16989 SLC45A4-202ENST00000517878 3470 ntTSL 1 (best) BASIC11.81□□□□□ -0.521e-14■■■□□ 14.6
YBX3P16989 LONP2-209ENST00000570174 818 ntTSL 58.45□□□□□ -1.061e-6■■■□□ 14.6
YBX3P16989 URI1-205ENST00000573052 291 ntTSL 34.02□□□□□ -1.774e-8■■■□□ 14.6
YBX3P16989 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.591e-6■■■□□ 14.6
YBX3P16989 CDK5-201ENST00000297518 783 ntTSL 1 (best) BASIC15.6■□□□□ 0.091e-6■■■□□ 14.6
YBX3P16989 UBE3A-223ENST00000631247 789 ntTSL 514.09□□□□□ -0.153e-6■■■□□ 14.6
YBX3P16989 FAM120AOS-205ENST00000476484 1491 ntTSL 1 (best)33.98■■■■□ 3.039e-7■■■□□ 14.6
YBX3P16989 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.339e-7■■■□□ 14.6
YBX3P16989 FAF2-205ENST00000510730 684 ntTSL 325.32■■□□□ 1.642e-8■■■□□ 14.6
YBX3P16989 FAM120AOS-211ENST00000523407 1735 ntTSL 524.91■■□□□ 1.589e-7■■■□□ 14.6
YBX3P16989 FH-202ENST00000493477 414 ntTSL 323.47■■□□□ 1.352e-8■■■□□ 14.6
YBX3P16989 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.78■■□□□ 1.082e-8■■■□□ 14.6
YBX3P16989 FAM120AOS-206ENST00000479094 1905 ntTSL 1 (best)21.26■□□□□ 0.999e-7■■■□□ 14.6
YBX3P16989 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.832e-8■■■□□ 14.6
YBX3P16989 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.822e-8■■■□□ 14.6
YBX3P16989 FAM120AOS-209ENST00000520403 1846 ntTSL 519.58■□□□□ 0.729e-7■■■□□ 14.6
YBX3P16989 INTS1-207ENST00000493531 828 ntTSL 319.27■□□□□ 0.682e-8■■■□□ 14.6
YBX3P16989 SGTA-204ENST00000589251 637 ntTSL 319.14■□□□□ 0.652e-8■■■□□ 14.6
YBX3P16989 TMEM8A-207ENST00000475348 639 ntTSL 218.94■□□□□ 0.622e-8■■■□□ 14.6
YBX3P16989 PLCL1-202ENST00000435320 6665 ntTSL 218.43■□□□□ 0.542e-8■■■□□ 14.6
YBX3P16989 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.532e-8■■■□□ 14.6
YBX3P16989 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.522e-8■■■□□ 14.6
YBX3P16989 FAM120AOS-208ENST00000483149 1432 ntTSL 1 (best)17.98■□□□□ 0.479e-7■■■□□ 14.6
YBX3P16989 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.76■□□□□ 0.438e-6■■■□□ 14.6
YBX3P16989 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.379e-7■■■□□ 14.6
YBX3P16989 INTS14-217ENST00000573314 2615 ntTSL 1 (best)16.66■□□□□ 0.268e-6■■■□□ 14.6
YBX3P16989 TMEM8A-206ENST00000467452 646 ntTSL 215.72■□□□□ 0.112e-8■■■□□ 14.6
YBX3P16989 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.038e-6■■■□□ 14.6
YBX3P16989 FAM120AOS-210ENST00000520470 1553 ntTSL 1 (best)14.05□□□□□ -0.169e-7■■■□□ 14.6
YBX3P16989 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.192e-8■■■□□ 14.6
YBX3P16989 MOGS-206ENST00000462189 2400 ntTSL 213.89□□□□□ -0.192e-8■■■□□ 14.6
YBX3P16989 LRBA-211ENST00000513021 568 ntTSL 411.39□□□□□ -0.593e-6■■■□□ 14.6
YBX3P16989 BTK-206ENST00000470329 572 ntTSL 311.3□□□□□ -0.62e-8■■■□□ 14.6
YBX3P16989 FAF2-204ENST00000510446 756 ntTSL 38.35□□□□□ -1.072e-8■■■□□ 14.6
YBX3P16989 EIF3J-207ENST00000558353 1024 ntTSL 57.32□□□□□ -1.242e-8■■■□□ 14.6
YBX3P16989 PLCL1-205ENST00000487695 3083 ntTSL 56.78□□□□□ -1.322e-8■■■□□ 14.6
YBX3P16989 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.81□□□□□ -1.82e-8■■■□□ 14.6
YBX3P16989 PCBD1-203ENST00000493961 389 ntTSL 216.79■□□□□ 0.286e-7■■■□□ 14.6
YBX3P16989 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.044e-7■■■□□ 14.6
YBX3P16989 SCFD1-201ENST00000311943 2016 ntTSL 215.67■□□□□ 0.15e-7■■■□□ 14.6
YBX3P16989 SCFD1-206ENST00000484733 2308 ntTSL 515.61■□□□□ 0.095e-7■■■□□ 14.6
YBX3P16989 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.115e-7■■■□□ 14.6
YBX3P16989 SCFD1-215ENST00000555259 1553 ntTSL 1 (best)14□□□□□ -0.175e-7■■■□□ 14.6
YBX3P16989 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC12.12□□□□□ -0.475e-7■■■□□ 14.6
YBX3P16989 SCFD1-222ENST00000556768 1829 ntTSL 1 (best)9.66□□□□□ -0.865e-7■■■□□ 14.6
YBX3P16989 SCFD1-204ENST00000463622 1943 ntTSL 25.07□□□□□ -1.65e-7■■■□□ 14.6
YBX3P16989 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.03□□□□□ -1.65e-7■■■□□ 14.6
YBX3P16989 TCF12-219ENST00000560836 212 ntTSL 314.09□□□□□ -0.152e-12■■■□□ 14.6
YBX3P16989 TCF12-221ENST00000560948 440 ntTSL 28.66□□□□□ -1.022e-12■■■□□ 14.6
YBX3P16989 EMD-205ENST00000471965 800 ntTSL 227.47■■□□□ 1.991e-10■■■□□ 14.6
YBX3P16989 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.62e-8■■■□□ 14.6
YBX3P16989 PCNA-201ENST00000379143 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 02e-8■■■□□ 14.6
YBX3P16989 EIF2S1-203ENST00000554332 534 ntTSL 27.65□□□□□ -1.183e-11■■■□□ 14.6
YBX3P16989 LMBR1-210ENST00000434503 930 ntTSL 528.67■■■□□ 2.189e-8■■■□□ 14.6
YBX3P16989 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.917e-9■■■□□ 14.6
YBX3P16989 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.787e-9■■■□□ 14.6
YBX3P16989 LMBR1-213ENST00000454132 2922 ntTSL 219.67■□□□□ 0.749e-8■■■□□ 14.6
YBX3P16989 PCSK6-210ENST00000559499 3325 ntTSL 216.89■□□□□ 0.297e-9■■■□□ 14.6
YBX3P16989 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.7■□□□□ 0.269e-8■■■□□ 14.6
YBX3P16989 PCSK6-203ENST00000557794 1196 ntTSL 515.37■□□□□ 0.057e-9■■■□□ 14.6
YBX3P16989 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.229e-8■■■□□ 14.6
YBX3P16989 PCSK6-207ENST00000558951 543 ntTSL 313.09□□□□□ -0.317e-9■■■□□ 14.6
YBX3P16989 PCSK6-202ENST00000398185 3723 ntTSL 1 (best)10.89□□□□□ -0.677e-9■■■□□ 14.6
YBX3P16989 LMBR1-204ENST00000415428 3457 ntTSL 1 (best)9.29□□□□□ -0.929e-8■■■□□ 14.6
YBX3P16989 PCSK6-206ENST00000558864 3868 ntTSL 26.76□□□□□ -1.337e-9■■■□□ 14.6
YBX3P16989 LMBR1-212ENST00000448926 3629 ntTSL 24.55□□□□□ -1.689e-8■■■□□ 14.6
YBX3P16989 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.981e-6■■■□□ 14.6
YBX3P16989 TRIP13-205ENST00000510412 571 ntTSL 512.82□□□□□ -0.361e-6■■■□□ 14.6
YBX3P16989 EIF5-220ENST00000561406 384 ntTSL 37.45□□□□□ -1.223e-7■■■□□ 14.6
YBX3P16989 KIF2C-202ENST00000372224 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.648e-9■■■□□ 14.6
YBX3P16989 KIF2C-201ENST00000372217 2955 ntTSL 1 (best) BASIC9.45□□□□□ -0.98e-9■■■□□ 14.6
YBX3P16989 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.671e-6■■■□□ 14.6
YBX3P16989 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC8.74□□□□□ -1.011e-6■■■□□ 14.6
YBX3P16989 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.05■□□□□ 0.483e-7■■■□□ 14.6
YBX3P16989 PRKAG1-216ENST00000551770 1015 ntTSL 312.31□□□□□ -0.443e-7■■■□□ 14.6
YBX3P16989 PRKAG1-215ENST00000551696 688 ntTSL 53.97□□□□□ -1.773e-7■■■□□ 14.6
YBX3P16989 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.024e-10■■■□□ 14.6
YBX3P16989 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.064e-10■■■□□ 14.6
YBX3P16989 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.434e-10■■■□□ 14.6
Retrieved 100 of 29,075 protein–RNA pairs in 570.8 ms