RNA–Protein interactions for RNA: ENST00000379143.9

PCNA-201, Transcript of proliferating cell nuclear antigen, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCNA, Length 1,344 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNA-201ENST00000379143 NISCHQ9Y2I1 1504 aa28.5■■■□□ 2.15
PCNA-201ENST00000379143 CCDC180Q9P1Z9 1646 aa25.29■■□□□ 1.64
PCNA-201ENST00000379143 ABCC9O60706 1549 aa24.76■■□□□ 1.55
PCNA-201ENST00000379143 ZCCHC6Q5VYS8 1495 aaKnown RBP23.79■■□□□ 1.4
PCNA-201ENST00000379143 NACADO15069 1562 aa23.72■■□□□ 1.39
PCNA-201ENST00000379143 DCAF8L2P0C7V8 631 aa23.69■■□□□ 1.38
PCNA-201ENST00000379143 RB1CC1Q8TDY2 1594 aa23.69■■□□□ 1.38
PCNA-201ENST00000379143 MYO15BQ96JP2 1530 aa23.68■■□□□ 1.38
PCNA-201ENST00000379143 DCAF1Q9Y4B6 1507 aa23.64■■□□□ 1.37
PCNA-201ENST00000379143 AEBP2Q6ZN18 517 aaPredicted RBP23.63■■□□□ 1.37
PCNA-201ENST00000379143 DNAJC5BQ9UF47 199 aa23.56■■□□□ 1.36
PCNA-201ENST00000379143 UNC13AQ9UPW8 1703 aa23.11■■□□□ 1.29
PCNA-201ENST00000379143 SCRIBQ14160 1630 aa23.03■■□□□ 1.28
PCNA-201ENST00000379143 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
PCNA-201ENST00000379143 PABPN1Q86U42 306 aaKnown RBP eCLIP22.94■■□□□ 1.26
PCNA-201ENST00000379143 BICRAQ9NZM4 1560 aa22.91■■□□□ 1.26
PCNA-201ENST00000379143 SHROOM4Q9ULL8 1493 aa22.78■■□□□ 1.24
PCNA-201ENST00000379143 CC2D2AQ9P2K1 1620 aa22.41■■□□□ 1.18
PCNA-201ENST00000379143 CECR2Q9BXF3 1484 aa22.34■■□□□ 1.17
PCNA-201ENST00000379143 EIF4G1Q04637 1599 aaKnown RBP22.31■■□□□ 1.16
PCNA-201ENST00000379143 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
PCNA-201ENST00000379143 SMARCA4P51532 1647 aa22.08■■□□□ 1.12
PCNA-201ENST00000379143 MROH2BQ7Z745 1585 aa21.94■■□□□ 1.1
PCNA-201ENST00000379143 SMARCA2P51531 1590 aa21.91■■□□□ 1.1
PCNA-201ENST00000379143 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
PCNA-201ENST00000379143 DNAJC5Q9H3Z4 198 aa21.88■■□□□ 1.09
PCNA-201ENST00000379143 PEG3Q9GZU2 1588 aa21.88■■□□□ 1.09
PCNA-201ENST00000379143 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
PCNA-201ENST00000379143 HMGXB3Q12766 1538 aa21.79■■□□□ 1.08
PCNA-201ENST00000379143 RSF1Q96T23 1441 aaPredicted RBP21.78■■□□□ 1.08
PCNA-201ENST00000379143 BAZ1BQ9UIG0 1483 aaKnown RBP21.73■■□□□ 1.07
PCNA-201ENST00000379143 WIZO95785 1651 aa21.73■■□□□ 1.07
PCNA-201ENST00000379143 TOP2AP11388 1531 aaKnown RBP21.54■■□□□ 1.04
PCNA-201ENST00000379143 CUX2O14529 1486 aa21.51■■□□□ 1.03
PCNA-201ENST00000379143 ERCC6Q03468 1493 aa21.39■■□□□ 1.01
PCNA-201ENST00000379143 SUPT5HO00267 1087 aaKnown RBP21.38■■□□□ 1.01
PCNA-201ENST00000379143 LAMC3Q9Y6N6 1575 aa21.27■■□□□ 1
PCNA-201ENST00000379143 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
PCNA-201ENST00000379143 CADPSQ9ULU8 1353 aa21.23■□□□□ 0.99
PCNA-201ENST00000379143 NESP48681 1621 aa21.21■□□□□ 0.99
PCNA-201ENST00000379143 CFTRP13569 1480 aa21.15■□□□□ 0.98
PCNA-201ENST00000379143 PDS5BQ9NTI5 1447 aa21.12■□□□□ 0.97
PCNA-201ENST00000379143 THOC2Q8NI27 1593 aaKnown RBP21.11■□□□□ 0.97
PCNA-201ENST00000379143 PRDM2Q13029 1718 aa21.04■□□□□ 0.96
PCNA-201ENST00000379143 KIF21AQ7Z4S6 1674 aa21■□□□□ 0.95
PCNA-201ENST00000379143 FANCD2Q9BXW9 1451 aa20.98■□□□□ 0.95
PCNA-201ENST00000379143 CEP164Q9UPV0 1460 aa20.95■□□□□ 0.94
PCNA-201ENST00000379143 MRC2Q9UBG0 1479 aa20.86■□□□□ 0.93
PCNA-201ENST00000379143 WDR62O43379 1518 aa20.79■□□□□ 0.92
PCNA-201ENST00000379143 ABCC8Q09428 1581 aa20.74■□□□□ 0.91
PCNA-201ENST00000379143 URB2Q14146 1524 aaKnown RBP20.74■□□□□ 0.91
PCNA-201ENST00000379143 TRIM41Q8WV44 630 aa20.74■□□□□ 0.91
PCNA-201ENST00000379143 DNMBPQ6XZF7 1577 aa20.68■□□□□ 0.9
PCNA-201ENST00000379143 TOPBP1Q92547 1522 aa20.67■□□□□ 0.9
PCNA-201ENST00000379143 CUX1P39880 1505 aa20.58■□□□□ 0.88
PCNA-201ENST00000379143 WRNQ14191 1432 aaPredicted RBP eCLIP20.55■□□□□ 0.88
PCNA-201ENST00000379143 POLA1P09884 1462 aaPredicted RBP20.5■□□□□ 0.87
PCNA-201ENST00000379143 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
PCNA-201ENST00000379143 TOP2BQ02880 1626 aa20.5■□□□□ 0.87
PCNA-201ENST00000379143 BIVM-ERCC5R4GMW8 1640 aa20.5■□□□□ 0.87
PCNA-201ENST00000379143 FGD5Q6ZNL6 1462 aa20.49■□□□□ 0.87
PCNA-201ENST00000379143 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
PCNA-201ENST00000379143 SOGA1O94964 1423 aa20.43■□□□□ 0.86
PCNA-201ENST00000379143 TARBP1Q13395 1621 aaKnown RBP20.42■□□□□ 0.86
PCNA-201ENST00000379143 OSCARQ8IYS5 282 aa20.39■□□□□ 0.85
PCNA-201ENST00000379143 RAD54L2Q9Y4B4 1467 aa20.38■□□□□ 0.85
PCNA-201ENST00000379143 WDR97A6NE52 1622 aa20.35■□□□□ 0.85
PCNA-201ENST00000379143 ZNF608Q9ULD9 1512 aaPredicted RBP20.34■□□□□ 0.85
PCNA-201ENST00000379143 ABCA10Q8WWZ4 1543 aa20.31■□□□□ 0.84
PCNA-201ENST00000379143 EIF4G3O43432 1585 aaKnown RBP20.31■□□□□ 0.84
PCNA-201ENST00000379143 RIMBP3CA6NJZ7 1639 aa20.29■□□□□ 0.84
PCNA-201ENST00000379143 RIMBP3BA6NNM3 1639 aa20.29■□□□□ 0.84
PCNA-201ENST00000379143 RIMBP3Q9UFD9 1639 aa20.29■□□□□ 0.84
PCNA-201ENST00000379143 TDRD9Q8NDG6 1382 aaKnown RBP20.26■□□□□ 0.83
PCNA-201ENST00000379143 AQRO60306 1485 aaKnown RBP eCLIP20.25■□□□□ 0.831e-7■■■■■ 32.1
PCNA-201ENST00000379143 ABCA5Q8WWZ7 1642 aa20.21■□□□□ 0.83
PCNA-201ENST00000379143 GAPVD1Q14C86 1478 aa20.2■□□□□ 0.82
PCNA-201ENST00000379143 PHF23Q9BUL5 403 aaPredicted RBP20.2■□□□□ 0.82
PCNA-201ENST00000379143 GRIN2BQ13224 1484 aa20.19■□□□□ 0.82
PCNA-201ENST00000379143 PBRM1Q86U86 1689 aa20.16■□□□□ 0.82
PCNA-201ENST00000379143 ARHGEF11O15085 1522 aa20.15■□□□□ 0.82
PCNA-201ENST00000379143 KIF27Q86VH2 1401 aa20.13■□□□□ 0.81
PCNA-201ENST00000379143 MAGI1Q96QZ7 1491 aaPredicted RBP20.12■□□□□ 0.81
PCNA-201ENST00000379143 ERICH3Q5RHP9 1530 aa20.1■□□□□ 0.81
PCNA-201ENST00000379143 SNAPC4Q5SXM2 1469 aa20.1■□□□□ 0.81
PCNA-201ENST00000379143 SENP3Q9H4L4 574 aaPredicted RBP20.06■□□□□ 0.8
PCNA-201ENST00000379143 CHD1O14646 1710 aa20.04■□□□□ 0.8
PCNA-201ENST00000379143 SYNJ2O15056 1496 aa20.02■□□□□ 0.8
PCNA-201ENST00000379143 ADAMTS12P58397 1594 aa20■□□□□ 0.79
PCNA-201ENST00000379143 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
PCNA-201ENST00000379143 FHAD1B1AJZ9 1412 aa19.99■□□□□ 0.79
PCNA-201ENST00000379143 FBLN2P98095 1184 aa19.99■□□□□ 0.79
PCNA-201ENST00000379143 IGF1RP08069 1367 aa19.98■□□□□ 0.79
PCNA-201ENST00000379143 CUL7Q14999 1698 aa19.97■□□□□ 0.79
PCNA-201ENST00000379143 CYB5RLQ6IPT4 315 aa19.95■□□□□ 0.78
PCNA-201ENST00000379143 RUSC2Q8N2Y8 1516 aa19.93■□□□□ 0.78
PCNA-201ENST00000379143 EEA1Q15075 1411 aa19.92■□□□□ 0.78
PCNA-201ENST00000379143 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
PCNA-201ENST00000379143 GRIN2AQ12879 1464 aa19.91■□□□□ 0.78
PCNA-201ENST00000379143 CARMIL1Q5VZK9 1371 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms