RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 AEBP2Q6ZN18 517 aaPredicted RBP18.52■□□□□ 0.56
SCFD1-204ENST00000463622 CHIC1Q5VXU3 224 aa17.76■□□□□ 0.43
SCFD1-204ENST00000463622 PHF23Q9BUL5 403 aaPredicted RBP15.66■□□□□ 0.1
SCFD1-204ENST00000463622 SENP3Q9H4L4 574 aaPredicted RBP15.66■□□□□ 0.1
SCFD1-204ENST00000463622 FOXD1Q16676 465 aa14.64□□□□□ -0.07
SCFD1-204ENST00000463622 PLPPR3Q6T4P5 718 aa14.29□□□□□ -0.12
SCFD1-204ENST00000463622 PPP6R1Q9UPN7 881 aa13.94□□□□□ -0.18
SCFD1-204ENST00000463622 ADRA2BP18089 450 aa13.91□□□□□ -0.18
SCFD1-204ENST00000463622 PIAS4Q8N2W9 510 aaPredicted RBP13.74□□□□□ -0.21
SCFD1-204ENST00000463622 MSH5O43196 834 aa13.51□□□□□ -0.25
SCFD1-204ENST00000463622 POTEDQ86YR6 584 aa12.83□□□□□ -0.36
SCFD1-204ENST00000463622 MAPK8IP2Q13387 824 aaPredicted RBP12.72□□□□□ -0.37
SCFD1-204ENST00000463622 PPP4R3CPQ6ZMV5 832 aa12.61□□□□□ -0.39
SCFD1-204ENST00000463622 SCAF1Q9H7N4 1312 aaKnown RBP12.59□□□□□ -0.39
SCFD1-204ENST00000463622 DMRT2Q9Y5R5 561 aa12.47□□□□□ -0.41
SCFD1-204ENST00000463622 CNKSR2Q8WXI2 1034 aa12.27□□□□□ -0.45
SCFD1-204ENST00000463622 NCBP3Q53F19 620 aaKnown RBP12.13□□□□□ -0.47
SCFD1-204ENST00000463622 HOXD11P31277 338 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-204ENST00000463622 RNF216Q9NWF9 866 aaPredicted RBP12.08□□□□□ -0.48
SCFD1-204ENST00000463622 KCNA4P22459 653 aa12.07□□□□□ -0.48
SCFD1-204ENST00000463622 DCAF8L1A6NGE4 600 aa12.04□□□□□ -0.48
SCFD1-204ENST00000463622 NPM3O75607 178 aaKnown RBP12.03□□□□□ -0.48
SCFD1-204ENST00000463622 RNF39Q9H2S5 420 aa11.59□□□□□ -0.55
SCFD1-204ENST00000463622 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.58□□□□□ -0.552e-7■□□□□ 10.1
SCFD1-204ENST00000463622 DNAJC5BQ9UF47 199 aa11.56□□□□□ -0.56
SCFD1-204ENST00000463622 CACNB1Q02641 598 aaPredicted RBP11.51□□□□□ -0.57
SCFD1-204ENST00000463622 SLC4A2P04920 1241 aa11.44□□□□□ -0.58
SCFD1-204ENST00000463622 SLC4A1APQ9BWU0 796 aaKnown RBP11.41□□□□□ -0.58
SCFD1-204ENST00000463622 C1QBPQ07021 282 aaKnown RBP11.4□□□□□ -0.58
SCFD1-204ENST00000463622 U3KPZ7 1027 aaPredicted RBP11.37□□□□□ -0.59
SCFD1-204ENST00000463622 SPINK5Q9NQ38 1064 aaPredicted RBP11.17□□□□□ -0.62
SCFD1-204ENST00000463622 CAPN15O75808 1086 aa11.11□□□□□ -0.63
SCFD1-204ENST00000463622 ZBTB22O15209 634 aa11.11□□□□□ -0.63
SCFD1-204ENST00000463622 FOXD4L1Q9NU39 408 aa11.11□□□□□ -0.63
SCFD1-204ENST00000463622 MYCNP04198 464 aaPredicted RBP11.07□□□□□ -0.64
SCFD1-204ENST00000463622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-204ENST00000463622 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
SCFD1-204ENST00000463622 TRHP20396 242 aaPredicted RBP11.03□□□□□ -0.64
SCFD1-204ENST00000463622 SAMD1Q6SPF0 538 aaPredicted RBP11.01□□□□□ -0.65
SCFD1-204ENST00000463622 DSG3P32926 999 aa10.96□□□□□ -0.65
SCFD1-204ENST00000463622 APLP2Q06481 763 aa10.96□□□□□ -0.66
SCFD1-204ENST00000463622 ABCB7O75027 752 aa10.92□□□□□ -0.66
SCFD1-204ENST00000463622 ZNF219Q9P2Y4 722 aaPredicted RBP10.91□□□□□ -0.66
SCFD1-204ENST00000463622 ATF5Q9Y2D1 282 aaPredicted RBP10.9□□□□□ -0.66
SCFD1-204ENST00000463622 EHMT2Q96KQ7 1210 aa10.87□□□□□ -0.67
SCFD1-204ENST00000463622 CSRNP3Q8WYN3 585 aa10.82□□□□□ -0.68
SCFD1-204ENST00000463622 POLA2Q14181 598 aa10.77□□□□□ -0.69
SCFD1-204ENST00000463622 ATXN8OSP0DMR3 200 aa10.68□□□□□ -0.7
SCFD1-204ENST00000463622 ZBTB12Q9Y330 459 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-204ENST00000463622 OSCARQ8IYS5 282 aa10.41□□□□□ -0.74
SCFD1-204ENST00000463622 RBM42Q9BTD8 480 aaKnown RBP10.39□□□□□ -0.75
SCFD1-204ENST00000463622 MKRN4PQ13434 485 aaPredicted RBP10.38□□□□□ -0.75
SCFD1-204ENST00000463622 FBLN2P98095 1184 aa10.36□□□□□ -0.75
SCFD1-204ENST00000463622 AKT1S1Q96B36 256 aa10.22□□□□□ -0.77
SCFD1-204ENST00000463622 SPDYE2BA6NHP3 402 aa10.19□□□□□ -0.78
SCFD1-204ENST00000463622 SPDYE6P0CI01 402 aa10.19□□□□□ -0.78
SCFD1-204ENST00000463622 SPDYE2Q495Y8 402 aa10.19□□□□□ -0.78
SCFD1-204ENST00000463622 REM2Q8IYK8 340 aaPredicted RBP10.18□□□□□ -0.78
SCFD1-204ENST00000463622 ZNF692Q9BU19 519 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-204ENST00000463622 CHRDL2Q6WN34 429 aa10.11□□□□□ -0.79
SCFD1-204ENST00000463622 POTEHQ6S545 545 aa10.09□□□□□ -0.79
SCFD1-204ENST00000463622 SSUH2Q9Y2M2 353 aa10.09□□□□□ -0.79
SCFD1-204ENST00000463622 PITPNM1O00562 1244 aa10.07□□□□□ -0.8
SCFD1-204ENST00000463622 PABPN1Q86U42 306 aaKnown RBP eCLIP10.03□□□□□ -0.83e-6■■■■□ 24.8
SCFD1-204ENST00000463622 CLEC11AQ9Y240 323 aa10.01□□□□□ -0.81
SCFD1-204ENST00000463622 SPDYE4A6NLX3 237 aa9.99□□□□□ -0.81
SCFD1-204ENST00000463622 SPDYE1Q8NFV5 336 aaPredicted RBP9.96□□□□□ -0.81
SCFD1-204ENST00000463622 PIP4P2Q8N4L2 257 aa9.95□□□□□ -0.82
SCFD1-204ENST00000463622 FXR2P51116 673 aaKnown RBP eCLIP9.9□□□□□ -0.83
SCFD1-204ENST00000463622 PRR29P0C7W0 189 aa9.84□□□□□ -0.83
SCFD1-204ENST00000463622 PRKAR2AP13861 404 aaKnown RBP9.82□□□□□ -0.84
SCFD1-204ENST00000463622 CHADLQ6NUI6 762 aa9.82□□□□□ -0.84
SCFD1-204ENST00000463622 FKBP8Q14318 412 aa9.8□□□□□ -0.84
SCFD1-204ENST00000463622 PROM2Q8N271 834 aa9.74□□□□□ -0.85
SCFD1-204ENST00000463622 STAG3Q9UJ98 1225 aa9.73□□□□□ -0.85
SCFD1-204ENST00000463622 HAX1O00165 279 aa9.72□□□□□ -0.85
SCFD1-204ENST00000463622 EVX2Q03828 476 aa9.66□□□□□ -0.86
SCFD1-204ENST00000463622 CREBZFQ9NS37 354 aa9.66□□□□□ -0.86
SCFD1-204ENST00000463622 FARP1Q9Y4F1 1045 aaPredicted RBP9.63□□□□□ -0.87
SCFD1-204ENST00000463622 C19orf67A6NJJ6 358 aa9.57□□□□□ -0.88
SCFD1-204ENST00000463622 SP7Q8TDD2 431 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-204ENST00000463622 MIER1Q8N108 512 aa9.54□□□□□ -0.88
SCFD1-204ENST00000463622 MNX1P50219 401 aaPredicted RBP9.52□□□□□ -0.88
SCFD1-204ENST00000463622 CD44P16070 742 aaKnown RBP9.51□□□□□ -0.89
SCFD1-204ENST00000463622 PLCD3Q8N3E9 789 aa9.48□□□□□ -0.89
SCFD1-204ENST00000463622 NPM1P06748 294 aaKnown RBP eCLIP9.44□□□□□ -0.9
SCFD1-204ENST00000463622 ZRANB1Q9UGI0 708 aa9.44□□□□□ -0.9
SCFD1-204ENST00000463622 FBXO3Q9UK99 471 aa9.43□□□□□ -0.9
SCFD1-204ENST00000463622 PLEKHG5O94827 1062 aa9.42□□□□□ -0.9
SCFD1-204ENST00000463622 GABBR2O75899 941 aa9.41□□□□□ -0.9
SCFD1-204ENST00000463622 TSPYL2Q9H2G4 693 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-204ENST00000463622 VASPP50552 380 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-204ENST00000463622 PAK3O75914 559 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-204ENST00000463622 PHF12Q96QT6 1004 aa9.35□□□□□ -0.91
SCFD1-204ENST00000463622 RASEFQ8IZ41 740 aa9.34□□□□□ -0.91
SCFD1-204ENST00000463622 ZNF579Q8NAF0 562 aaKnown RBP9.33□□□□□ -0.92
SCFD1-204ENST00000463622 NUBP1P53384 320 aa9.29□□□□□ -0.92
SCFD1-204ENST00000463622 KLHL34Q8N239 644 aa9.29□□□□□ -0.92
SCFD1-204ENST00000463622 ZBTB47Q9UFB7 747 aaPredicted RBP9.29□□□□□ -0.92
SCFD1-204ENST00000463622 GALR2O43603 387 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms