RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 NISCHQ9Y2I1 1504 aa29.27■■■□□ 2.28
SCFD1-201ENST00000311943 CCDC180Q9P1Z9 1646 aa25.85■■□□□ 1.73
SCFD1-201ENST00000311943 ABCC9O60706 1549 aa25.59■■□□□ 1.69
SCFD1-201ENST00000311943 DCAF8L2P0C7V8 631 aa24.7■■□□□ 1.54
SCFD1-201ENST00000311943 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
SCFD1-201ENST00000311943 RB1CC1Q8TDY2 1594 aa24.37■■□□□ 1.49
SCFD1-201ENST00000311943 NACADO15069 1562 aa24.32■■□□□ 1.48
SCFD1-201ENST00000311943 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
SCFD1-201ENST00000311943 DCAF1Q9Y4B6 1507 aa24.05■■□□□ 1.44
SCFD1-201ENST00000311943 PABPN1Q86U42 306 aaKnown RBP eCLIP24.02■■□□□ 1.443e-6■■■■□ 24.8
SCFD1-201ENST00000311943 UNC13AQ9UPW8 1703 aa23.99■■□□□ 1.43
SCFD1-201ENST00000311943 SCRIBQ14160 1630 aa23.85■■□□□ 1.41
SCFD1-201ENST00000311943 BICRAQ9NZM4 1560 aa23.81■■□□□ 1.4
SCFD1-201ENST00000311943 DNAJC5BQ9UF47 199 aa23.63■■□□□ 1.37
SCFD1-201ENST00000311943 SHROOM4Q9ULL8 1493 aa23.44■■□□□ 1.34
SCFD1-201ENST00000311943 EIF4G1Q04637 1599 aaKnown RBP23.13■■□□□ 1.29
SCFD1-201ENST00000311943 CC2D2AQ9P2K1 1620 aa23.06■■□□□ 1.28
SCFD1-201ENST00000311943 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
SCFD1-201ENST00000311943 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
SCFD1-201ENST00000311943 MROH2BQ7Z745 1585 aa22.68■■□□□ 1.22
SCFD1-201ENST00000311943 BAZ1AQ9NRL2 1556 aaPredicted RBP22.61■■□□□ 1.21
SCFD1-201ENST00000311943 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
SCFD1-201ENST00000311943 NCAPD3P42695 1498 aa22.52■■□□□ 1.19
SCFD1-201ENST00000311943 WIZO95785 1651 aa22.44■■□□□ 1.18
SCFD1-201ENST00000311943 SMARCA2P51531 1590 aa22.44■■□□□ 1.18
SCFD1-201ENST00000311943 RSF1Q96T23 1441 aaPredicted RBP22.39■■□□□ 1.17
SCFD1-201ENST00000311943 PEG3Q9GZU2 1588 aa22.39■■□□□ 1.17
SCFD1-201ENST00000311943 BAZ1BQ9UIG0 1483 aaKnown RBP22.39■■□□□ 1.17
SCFD1-201ENST00000311943 HMGXB3Q12766 1538 aa22.35■■□□□ 1.17
SCFD1-201ENST00000311943 NESP48681 1621 aa22.21■■□□□ 1.15
SCFD1-201ENST00000311943 TOP2AP11388 1531 aaKnown RBP22.05■■□□□ 1.12
SCFD1-201ENST00000311943 SUPT5HO00267 1087 aaKnown RBP22.01■■□□□ 1.11
SCFD1-201ENST00000311943 ERCC6Q03468 1493 aa21.93■■□□□ 1.1
SCFD1-201ENST00000311943 CCDC88BA6NC98 1476 aa21.9■■□□□ 1.1
SCFD1-201ENST00000311943 CADPSQ9ULU8 1353 aa21.9■■□□□ 1.1
SCFD1-201ENST00000311943 LAMC3Q9Y6N6 1575 aa21.87■■□□□ 1.09
SCFD1-201ENST00000311943 KIF21AQ7Z4S6 1674 aa21.83■■□□□ 1.09
SCFD1-201ENST00000311943 CFTRP13569 1480 aa21.76■■□□□ 1.07
SCFD1-201ENST00000311943 PDS5BQ9NTI5 1447 aa21.73■■□□□ 1.07
SCFD1-201ENST00000311943 THOC2Q8NI27 1593 aaKnown RBP21.69■■□□□ 1.06
SCFD1-201ENST00000311943 FANCD2Q9BXW9 1451 aa21.68■■□□□ 1.06
SCFD1-201ENST00000311943 CEP164Q9UPV0 1460 aa21.6■■□□□ 1.05
SCFD1-201ENST00000311943 MRC2Q9UBG0 1479 aa21.56■■□□□ 1.04
SCFD1-201ENST00000311943 CUX2O14529 1486 aa21.55■■□□□ 1.04
SCFD1-201ENST00000311943 URB2Q14146 1524 aaKnown RBP21.52■■□□□ 1.04
SCFD1-201ENST00000311943 PRDM2Q13029 1718 aa21.5■■□□□ 1.03
SCFD1-201ENST00000311943 WDR62O43379 1518 aa21.48■■□□□ 1.03
SCFD1-201ENST00000311943 TOPBP1Q92547 1522 aa21.34■■□□□ 1.01
SCFD1-201ENST00000311943 DNMBPQ6XZF7 1577 aa21.24■□□□□ 0.99
SCFD1-201ENST00000311943 CUX1P39880 1505 aa21.24■□□□□ 0.99
SCFD1-201ENST00000311943 ZNF608Q9ULD9 1512 aaPredicted RBP21.23■□□□□ 0.99
SCFD1-201ENST00000311943 ABCC8Q09428 1581 aa21.21■□□□□ 0.99
SCFD1-201ENST00000311943 RAD54L2Q9Y4B4 1467 aa21.19■□□□□ 0.98
SCFD1-201ENST00000311943 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
SCFD1-201ENST00000311943 FGD5Q6ZNL6 1462 aa21.14■□□□□ 0.98
SCFD1-201ENST00000311943 IFT140Q96RY7 1462 aa21.11■□□□□ 0.97
SCFD1-201ENST00000311943 TARBP1Q13395 1621 aaKnown RBP21.1■□□□□ 0.97
SCFD1-201ENST00000311943 AQRO60306 1485 aaKnown RBP eCLIP21.1■□□□□ 0.972e-9■■■■■ 39.4
SCFD1-201ENST00000311943 SYNJ1O43426 1573 aa21.09■□□□□ 0.97
SCFD1-201ENST00000311943 SOGA1O94964 1423 aa21.08■□□□□ 0.97
SCFD1-201ENST00000311943 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.96
SCFD1-201ENST00000311943 WRNQ14191 1432 aaPredicted RBP eCLIP21.06■□□□□ 0.96
SCFD1-201ENST00000311943 DNAJC5Q9H3Z4 198 aa21.04■□□□□ 0.96
SCFD1-201ENST00000311943 EIF4G3O43432 1585 aaKnown RBP21.03■□□□□ 0.96
SCFD1-201ENST00000311943 TOP2BQ02880 1626 aa20.96■□□□□ 0.95
SCFD1-201ENST00000311943 BIVM-ERCC5R4GMW8 1640 aa20.94■□□□□ 0.94
SCFD1-201ENST00000311943 WDR97A6NE52 1622 aa20.9■□□□□ 0.94
SCFD1-201ENST00000311943 FBLN2P98095 1184 aa20.86■□□□□ 0.93
SCFD1-201ENST00000311943 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
SCFD1-201ENST00000311943 SNAPC4Q5SXM2 1469 aa20.83■□□□□ 0.92
SCFD1-201ENST00000311943 GAPVD1Q14C86 1478 aa20.81■□□□□ 0.92
SCFD1-201ENST00000311943 OSCARQ8IYS5 282 aa20.8■□□□□ 0.92
SCFD1-201ENST00000311943 ABCA5Q8WWZ7 1642 aa20.79■□□□□ 0.92
SCFD1-201ENST00000311943 CHD1O14646 1710 aa20.77■□□□□ 0.92
SCFD1-201ENST00000311943 GRIN2BQ13224 1484 aa20.76■□□□□ 0.91
SCFD1-201ENST00000311943 PBRM1Q86U86 1689 aa20.75■□□□□ 0.91
SCFD1-201ENST00000311943 CHMP7Q8WUX9 453 aaPredicted RBP20.7■□□□□ 0.9
SCFD1-201ENST00000311943 RUSC2Q8N2Y8 1516 aa20.66■□□□□ 0.9
SCFD1-201ENST00000311943 MAGI1Q96QZ7 1491 aaPredicted RBP20.65■□□□□ 0.9
SCFD1-201ENST00000311943 TRIM41Q8WV44 630 aa20.63■□□□□ 0.89
SCFD1-201ENST00000311943 SYNJ2O15056 1496 aa20.63■□□□□ 0.89
SCFD1-201ENST00000311943 ADAMTS12P58397 1594 aa20.59■□□□□ 0.89
SCFD1-201ENST00000311943 IGF1RP08069 1367 aa20.57■□□□□ 0.88
SCFD1-201ENST00000311943 ERICH3Q5RHP9 1530 aa20.55■□□□□ 0.88
SCFD1-201ENST00000311943 KIF27Q86VH2 1401 aa20.55■□□□□ 0.88
SCFD1-201ENST00000311943 GRIN2AQ12879 1464 aa20.53■□□□□ 0.88
SCFD1-201ENST00000311943 FHAD1B1AJZ9 1412 aa20.52■□□□□ 0.88
SCFD1-201ENST00000311943 RIMBP3CA6NJZ7 1639 aa20.5■□□□□ 0.87
SCFD1-201ENST00000311943 RIMBP3BA6NNM3 1639 aa20.5■□□□□ 0.87
SCFD1-201ENST00000311943 RIMBP3Q9UFD9 1639 aa20.5■□□□□ 0.87
SCFD1-201ENST00000311943 CEP170Q5SW79 1584 aa20.5■□□□□ 0.87
SCFD1-201ENST00000311943 CLASP1Q7Z460 1538 aa20.5■□□□□ 0.87
SCFD1-201ENST00000311943 ARHGEF11O15085 1522 aa20.49■□□□□ 0.87
SCFD1-201ENST00000311943 CHIC1Q5VXU3 224 aa20.48■□□□□ 0.87
SCFD1-201ENST00000311943 NUP160Q12769 1436 aa20.42■□□□□ 0.86
SCFD1-201ENST00000311943 FAM9AQ8IZU1 332 aaPredicted RBP20.42■□□□□ 0.86
SCFD1-201ENST00000311943 ERCC6L2Q5T890 1561 aa20.42■□□□□ 0.86
SCFD1-201ENST00000311943 CYB5RLQ6IPT4 315 aa20.41■□□□□ 0.86
SCFD1-201ENST00000311943 CARMIL1Q5VZK9 1371 aa20.41■□□□□ 0.86
SCFD1-201ENST00000311943 ARAP1Q96P48 1450 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms