RNA–Protein interactions for RNA: ENST00000353442.9

LMBR1-201, Transcript of limb development membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMBR1, Length 7,997 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-201ENST00000353442 DCAF8L2P0C7V8 631 aa23.82■■□□□ 1.4
LMBR1-201ENST00000353442 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
LMBR1-201ENST00000353442 SUPT5HO00267 1087 aaKnown RBP21.85■■□□□ 1.09
LMBR1-201ENST00000353442 PELP1Q8IZL8 1130 aaKnown RBP21.42■■□□□ 1.02
LMBR1-201ENST00000353442 TTBK1Q5TCY1 1321 aaPredicted RBP21.42■■□□□ 1.02
LMBR1-201ENST00000353442 APLP2Q06481 763 aa21.31■■□□□ 1
LMBR1-201ENST00000353442 SHROOM4Q9ULL8 1493 aa21.3■■□□□ 1
LMBR1-201ENST00000353442 FAM9AQ8IZU1 332 aaPredicted RBP21.26■□□□□ 0.99
LMBR1-201ENST00000353442 RANGAP1P46060 587 aaPredicted RBP21.22■□□□□ 0.99
LMBR1-201ENST00000353442 ATP1B4Q9UN42 357 aaPredicted RBP21.11■□□□□ 0.97
LMBR1-201ENST00000353442 ERICH6Q7L0X2 663 aa21.02■□□□□ 0.96
LMBR1-201ENST00000353442 MYT1LQ9UL68 1186 aa20.68■□□□□ 0.9
LMBR1-201ENST00000353442 CHIC1Q5VXU3 224 aa20.63■□□□□ 0.89
LMBR1-201ENST00000353442 PCGF6Q9BYE7 350 aa20.63■□□□□ 0.89
LMBR1-201ENST00000353442 CCER1Q8TC90 406 aaPredicted RBP20.55■□□□□ 0.88
LMBR1-201ENST00000353442 MYT1Q01538 1121 aa20.47■□□□□ 0.87
LMBR1-201ENST00000353442 POLR3GLQ9BT43 218 aa20.37■□□□□ 0.85
LMBR1-201ENST00000353442 CNGB1Q14028 1251 aaPredicted RBP20.33■□□□□ 0.84
LMBR1-201ENST00000353442 YTHDC1Q96MU7 727 aaKnown RBP20.3■□□□□ 0.84
LMBR1-201ENST00000353442 SLC4A1APQ9BWU0 796 aaKnown RBP20.25■□□□□ 0.83
LMBR1-201ENST00000353442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.22■□□□□ 0.83
LMBR1-201ENST00000353442 HNRNPUL2Q1KMD3 747 aaKnown RBP20.22■□□□□ 0.83
LMBR1-201ENST00000353442 NEFLP07196 543 aa20.2■□□□□ 0.82
LMBR1-201ENST00000353442 UBTFP17480 764 aaKnown RBP20.17■□□□□ 0.82
LMBR1-201ENST00000353442 CENPBP07199 599 aaPredicted RBP20.11■□□□□ 0.81
LMBR1-201ENST00000353442 DAXXQ9UER7 740 aaPredicted RBP20.08■□□□□ 0.8
LMBR1-201ENST00000353442 PPARGC1BQ86YN6 1023 aaKnown RBP20.04■□□□□ 0.8
LMBR1-201ENST00000353442 ITGAEP38570 1179 aa19.99■□□□□ 0.79
LMBR1-201ENST00000353442 TRIM41Q8WV44 630 aa19.93■□□□□ 0.78
LMBR1-201ENST00000353442 SLC24A1O60721 1099 aa19.78■□□□□ 0.76
LMBR1-201ENST00000353442 BCL11AQ9H165 835 aa19.76■□□□□ 0.75
LMBR1-201ENST00000353442 CLSPNQ9HAW4 1339 aa19.69■□□□□ 0.74
LMBR1-201ENST00000353442 ZNF316A6NFI3 1004 aaPredicted RBP19.55■□□□□ 0.72
LMBR1-201ENST00000353442 ZEB1P37275 1124 aaPredicted RBP19.53■□□□□ 0.72
LMBR1-201ENST00000353442 BCANQ96GW7 911 aa19.53■□□□□ 0.72
LMBR1-201ENST00000353442 PLPPR3Q6T4P5 718 aa19.51■□□□□ 0.71
LMBR1-201ENST00000353442 NISCHQ9Y2I1 1504 aa19.45■□□□□ 0.7
LMBR1-201ENST00000353442 ZBTB47Q9UFB7 747 aaPredicted RBP19.31■□□□□ 0.68
LMBR1-201ENST00000353442 ZNF326Q5BKZ1 582 aaKnown RBP19.25■□□□□ 0.67
LMBR1-201ENST00000353442 TRIM52Q96A61 297 aa19.24■□□□□ 0.67
LMBR1-201ENST00000353442 FBLN2P98095 1184 aa19.22■□□□□ 0.67
LMBR1-201ENST00000353442 RTL5Q5HYW3 569 aaPredicted RBP19.21■□□□□ 0.67
LMBR1-201ENST00000353442 FAM50AQ14320 339 aaKnown RBP19.17■□□□□ 0.66
LMBR1-201ENST00000353442 A0A0G2JS52 829 aa19.08■□□□□ 0.65
LMBR1-201ENST00000353442 NEUROD1Q13562 356 aa19.08■□□□□ 0.64
LMBR1-201ENST00000353442 CANXP27824 592 aaKnown RBP19.07■□□□□ 0.64
LMBR1-201ENST00000353442 ARID3CA6NKF2 412 aa19.01■□□□□ 0.63
LMBR1-201ENST00000353442 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
LMBR1-201ENST00000353442 PLEKHG5O94827 1062 aa18.96■□□□□ 0.63
LMBR1-201ENST00000353442 NEFMP07197 916 aa18.95■□□□□ 0.62
LMBR1-201ENST00000353442 ESF1Q9H501 851 aaKnown RBP18.93■□□□□ 0.62
LMBR1-201ENST00000353442 STAG3Q9UJ98 1225 aa18.84■□□□□ 0.61
LMBR1-201ENST00000353442 CHGAP10645 457 aaKnown RBP18.82■□□□□ 0.6
LMBR1-201ENST00000353442 TRIM26Q12899 539 aaPredicted RBP18.81■□□□□ 0.6
LMBR1-201ENST00000353442 LOC105371045A0A1W2PR82 267 aa18.8■□□□□ 0.6
LMBR1-201ENST00000353442 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
LMBR1-201ENST00000353442 HRCP23327 699 aa18.76■□□□□ 0.59
LMBR1-201ENST00000353442 ZBTB7CA1YPR0 619 aa18.75■□□□□ 0.59
LMBR1-201ENST00000353442 ZNF777Q9ULD5 760 aaPredicted RBP18.74■□□□□ 0.59
LMBR1-201ENST00000353442 TULP1O00294 542 aaPredicted RBP18.72■□□□□ 0.59
LMBR1-201ENST00000353442 PABPN1Q86U42 306 aaKnown RBP eCLIP18.71■□□□□ 0.59
LMBR1-201ENST00000353442 NPM2Q86SE8 214 aaKnown RBP18.69■□□□□ 0.58
LMBR1-201ENST00000353442 P3H3Q8IVL6 736 aa18.64■□□□□ 0.57
LMBR1-201ENST00000353442 ANP32CO43423 234 aa18.59■□□□□ 0.57
LMBR1-201ENST00000353442 HSP90AA1P07900 732 aaKnown RBP18.59■□□□□ 0.57
LMBR1-201ENST00000353442 CDK11AQ9UQ88 783 aaPredicted RBP18.57■□□□□ 0.56
LMBR1-201ENST00000353442 CDK11BP21127 795 aaKnown RBP18.56■□□□□ 0.56
LMBR1-201ENST00000353442 DIEXFQ68CQ4 756 aaKnown RBP18.55■□□□□ 0.56
LMBR1-201ENST00000353442 NCBP3Q53F19 620 aaKnown RBP18.53■□□□□ 0.56
LMBR1-201ENST00000353442 C14orf37Q86TY3 774 aa18.53■□□□□ 0.56
LMBR1-201ENST00000353442 ARXQ96QS3 562 aa18.5■□□□□ 0.55
LMBR1-201ENST00000353442 SALL2Q9Y467 1007 aaPredicted RBP18.5■□□□□ 0.55
LMBR1-201ENST00000353442 ANP32BQ92688 251 aaKnown RBP18.43■□□□□ 0.54
LMBR1-201ENST00000353442 HAP1P54257 671 aaPredicted RBP18.43■□□□□ 0.54
LMBR1-201ENST00000353442 NPM1P06748 294 aaKnown RBP eCLIP18.42■□□□□ 0.54
LMBR1-201ENST00000353442 EIF5BO60841 1220 aaKnown RBP18.41■□□□□ 0.54
LMBR1-201ENST00000353442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.38■□□□□ 0.531e-6■■□□□ 12
LMBR1-201ENST00000353442 TAOK2Q9UL54 1235 aa18.35■□□□□ 0.53
LMBR1-201ENST00000353442 ANP32AP39687 249 aaKnown RBP18.32■□□□□ 0.52
LMBR1-201ENST00000353442 TPRNQ4KMQ1 711 aa18.29■□□□□ 0.52
LMBR1-201ENST00000353442 NPHP1O15259 732 aa18.28■□□□□ 0.52
LMBR1-201ENST00000353442 UPF2Q9HAU5 1272 aaKnown RBP18.21■□□□□ 0.51
LMBR1-201ENST00000353442 GTF3C3Q9Y5Q9 886 aa18.2■□□□□ 0.5
LMBR1-201ENST00000353442 ARID4BQ4LE39 1312 aaPredicted RBP18.18■□□□□ 0.5
LMBR1-201ENST00000353442 FAM9BQ8IZU0 186 aa18.17■□□□□ 0.5
LMBR1-201ENST00000353442 LMOD2Q6P5Q4 547 aa18.16■□□□□ 0.5
LMBR1-201ENST00000353442 ABCC9O60706 1549 aa18.14■□□□□ 0.49
LMBR1-201ENST00000353442 KDM2AQ9Y2K7 1162 aa18.14■□□□□ 0.49
LMBR1-201ENST00000353442 PPP1R15AO75807 674 aaPredicted RBP18.13■□□□□ 0.49
LMBR1-201ENST00000353442 CLSTN1O94985 981 aa18.1■□□□□ 0.49
LMBR1-201ENST00000353442 CHIC2Q9UKJ5 165 aa18.06■□□□□ 0.48
LMBR1-201ENST00000353442 MYH16Q9H6N6 1097 aa18.05■□□□□ 0.48
LMBR1-201ENST00000353442 WDR43Q15061 677 aaKnown RBP eCLIP18.04■□□□□ 0.48
LMBR1-201ENST00000353442 NBR1Q14596 966 aa18.04■□□□□ 0.48
LMBR1-201ENST00000353442 PPM1GO15355 546 aaPredicted RBP18.01■□□□□ 0.47
LMBR1-201ENST00000353442 SENP3-EIF4A1A0A087X0R7 540 aa17.98■□□□□ 0.47
LMBR1-201ENST00000353442 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.98■□□□□ 0.47
LMBR1-201ENST00000353442 FKBP8Q14318 412 aa17.97■□□□□ 0.47
LMBR1-201ENST00000353442 HNRNPUQ00839 825 aaKnown RBP eCLIP17.97■□□□□ 0.47
LMBR1-201ENST00000353442 TMC1Q8TDI8 760 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms