RNA–Protein interactions for RNA: ENST00000544052.6

SCFD1-207, Transcript of sec1 family domain containing 1, humanhuman

TSL 2 BASIC

Gene SCFD1, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-207ENST00000544052 AEBP2Q6ZN18 517 aaPredicted RBP17.43■□□□□ 0.38
SCFD1-207ENST00000544052 CHIC1Q5VXU3 224 aa16.58■□□□□ 0.24
SCFD1-207ENST00000544052 SENP3Q9H4L4 574 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-207ENST00000544052 PHF23Q9BUL5 403 aaPredicted RBP14.7□□□□□ -0.06
SCFD1-207ENST00000544052 FOXD1Q16676 465 aa13.87□□□□□ -0.19
SCFD1-207ENST00000544052 PLPPR3Q6T4P5 718 aa13.25□□□□□ -0.29
SCFD1-207ENST00000544052 MSH5O43196 834 aa13.04□□□□□ -0.32
SCFD1-207ENST00000544052 PIAS4Q8N2W9 510 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-207ENST00000544052 PPP6R1Q9UPN7 881 aa12.94□□□□□ -0.34
SCFD1-207ENST00000544052 ADRA2BP18089 450 aa12.91□□□□□ -0.34
SCFD1-207ENST00000544052 POTEDQ86YR6 584 aa12.71□□□□□ -0.38
SCFD1-207ENST00000544052 SCAF1Q9H7N4 1312 aaKnown RBP11.87□□□□□ -0.51
SCFD1-207ENST00000544052 MAPK8IP2Q13387 824 aaPredicted RBP11.85□□□□□ -0.51
SCFD1-207ENST00000544052 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
SCFD1-207ENST00000544052 PPP4R3CPQ6ZMV5 832 aa11.6□□□□□ -0.55
SCFD1-207ENST00000544052 KCNA4P22459 653 aa11.54□□□□□ -0.56
SCFD1-207ENST00000544052 CNKSR2Q8WXI2 1034 aa11.4□□□□□ -0.58
SCFD1-207ENST00000544052 HOXD11P31277 338 aaPredicted RBP11.38□□□□□ -0.59
SCFD1-207ENST00000544052 DCAF8L1A6NGE4 600 aa11.34□□□□□ -0.59
SCFD1-207ENST00000544052 RNF216Q9NWF9 866 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-207ENST00000544052 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
SCFD1-207ENST00000544052 NCBP3Q53F19 620 aaKnown RBP11.18□□□□□ -0.62
SCFD1-207ENST00000544052 CACNB1Q02641 598 aaPredicted RBP11.18□□□□□ -0.62
SCFD1-207ENST00000544052 RNF39Q9H2S5 420 aa11.1□□□□□ -0.63
SCFD1-207ENST00000544052 SLC4A1APQ9BWU0 796 aaKnown RBP11.02□□□□□ -0.65
SCFD1-207ENST00000544052 DNAJC5BQ9UF47 199 aa11.02□□□□□ -0.65
SCFD1-207ENST00000544052 NPM3O75607 178 aaKnown RBP10.98□□□□□ -0.65
SCFD1-207ENST00000544052 C1QBPQ07021 282 aaKnown RBP10.96□□□□□ -0.66
SCFD1-207ENST00000544052 CSRNP3Q8WYN3 585 aa10.9□□□□□ -0.66
SCFD1-207ENST00000544052 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.85□□□□□ -0.672e-7■□□□□ 10.1
SCFD1-207ENST00000544052 ZBTB22O15209 634 aa10.65□□□□□ -0.7
SCFD1-207ENST00000544052 U3KPZ7 1027 aaPredicted RBP10.61□□□□□ -0.71
SCFD1-207ENST00000544052 SLC4A2P04920 1241 aa10.48□□□□□ -0.73
SCFD1-207ENST00000544052 CAPN15O75808 1086 aa10.45□□□□□ -0.74
SCFD1-207ENST00000544052 SPINK5Q9NQ38 1064 aaPredicted RBP10.44□□□□□ -0.74
SCFD1-207ENST00000544052 FOXD4L1Q9NU39 408 aa10.43□□□□□ -0.74
SCFD1-207ENST00000544052 DSG3P32926 999 aa10.38□□□□□ -0.75
SCFD1-207ENST00000544052 APLP2Q06481 763 aa10.37□□□□□ -0.75
SCFD1-207ENST00000544052 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.35□□□□□ -0.75
SCFD1-207ENST00000544052 HNRNPUL2Q1KMD3 747 aaKnown RBP10.35□□□□□ -0.75
SCFD1-207ENST00000544052 SAMD1Q6SPF0 538 aaPredicted RBP10.28□□□□□ -0.76
SCFD1-207ENST00000544052 ZNF219Q9P2Y4 722 aaPredicted RBP10.28□□□□□ -0.76
SCFD1-207ENST00000544052 TRHP20396 242 aaPredicted RBP10.27□□□□□ -0.76
SCFD1-207ENST00000544052 ABCB7O75027 752 aa10.19□□□□□ -0.78
SCFD1-207ENST00000544052 MYCNP04198 464 aaPredicted RBP10.18□□□□□ -0.78
SCFD1-207ENST00000544052 POLA2Q14181 598 aa9.99□□□□□ -0.81
SCFD1-207ENST00000544052 ATXN8OSP0DMR3 200 aa9.98□□□□□ -0.81
SCFD1-207ENST00000544052 POTEHQ6S545 545 aa9.97□□□□□ -0.81
SCFD1-207ENST00000544052 RBM42Q9BTD8 480 aaKnown RBP9.95□□□□□ -0.82
SCFD1-207ENST00000544052 ATF5Q9Y2D1 282 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-207ENST00000544052 ZBTB12Q9Y330 459 aaPredicted RBP9.84□□□□□ -0.83
SCFD1-207ENST00000544052 FKBP8Q14318 412 aa9.81□□□□□ -0.84
SCFD1-207ENST00000544052 CHRDL2Q6WN34 429 aa9.71□□□□□ -0.86
SCFD1-207ENST00000544052 AKT1S1Q96B36 256 aa9.7□□□□□ -0.86
SCFD1-207ENST00000544052 RTN4Q9NQC3 1192 aaKnown RBP9.68□□□□□ -0.86
SCFD1-207ENST00000544052 OSCARQ8IYS5 282 aa9.67□□□□□ -0.86
SCFD1-207ENST00000544052 AMER1Q5JTC6 1135 aaPredicted RBP9.6□□□□□ -0.87
SCFD1-207ENST00000544052 REM2Q8IYK8 340 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-207ENST00000544052 FBLN2P98095 1184 aa9.58□□□□□ -0.88
SCFD1-207ENST00000544052 SPDYE2BA6NHP3 402 aa9.51□□□□□ -0.89
SCFD1-207ENST00000544052 SPDYE6P0CI01 402 aa9.51□□□□□ -0.89
SCFD1-207ENST00000544052 SPDYE2Q495Y8 402 aa9.51□□□□□ -0.89
SCFD1-207ENST00000544052 PITPNM1O00562 1244 aa9.49□□□□□ -0.89
SCFD1-207ENST00000544052 PIP4P2Q8N4L2 257 aa9.46□□□□□ -0.89
SCFD1-207ENST00000544052 MKRN4PQ13434 485 aaPredicted RBP9.46□□□□□ -0.9
SCFD1-207ENST00000544052 FXR2P51116 673 aaKnown RBP eCLIP9.41□□□□□ -0.9
SCFD1-207ENST00000544052 SPDYE4A6NLX3 237 aa9.39□□□□□ -0.91
SCFD1-207ENST00000544052 ZNF692Q9BU19 519 aaPredicted RBP9.38□□□□□ -0.91
SCFD1-207ENST00000544052 SLC24A1O60721 1099 aa9.36□□□□□ -0.91
SCFD1-207ENST00000544052 SSUH2Q9Y2M2 353 aa9.36□□□□□ -0.91
SCFD1-207ENST00000544052 SPDYE1Q8NFV5 336 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-207ENST00000544052 SP7Q8TDD2 431 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-207ENST00000544052 CLEC11AQ9Y240 323 aa9.32□□□□□ -0.92
SCFD1-207ENST00000544052 HAX1O00165 279 aa9.3□□□□□ -0.92
SCFD1-207ENST00000544052 PROM2Q8N271 834 aa9.27□□□□□ -0.93
SCFD1-207ENST00000544052 FBXO3Q9UK99 471 aa9.27□□□□□ -0.93
SCFD1-207ENST00000544052 PRKAR2AP13861 404 aaKnown RBP9.25□□□□□ -0.93
SCFD1-207ENST00000544052 PABPN1Q86U42 306 aaKnown RBP eCLIP9.24□□□□□ -0.933e-6■■■■□ 24.8
SCFD1-207ENST00000544052 VASPP50552 380 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-207ENST00000544052 PRR29P0C7W0 189 aa9.17□□□□□ -0.94
SCFD1-207ENST00000544052 EVX2Q03828 476 aa9.15□□□□□ -0.94
SCFD1-207ENST00000544052 IFNLR1Q8IU57 520 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-207ENST00000544052 CHADLQ6NUI6 762 aa9.12□□□□□ -0.95
SCFD1-207ENST00000544052 C19orf67A6NJJ6 358 aa9.11□□□□□ -0.95
SCFD1-207ENST00000544052 STAG3Q9UJ98 1225 aa9.01□□□□□ -0.97
SCFD1-207ENST00000544052 FARP1Q9Y4F1 1045 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-207ENST00000544052 PKD2Q13563 968 aa8.98□□□□□ -0.97
SCFD1-207ENST00000544052 GABBR2O75899 941 aa8.98□□□□□ -0.97
SCFD1-207ENST00000544052 CD44P16070 742 aaKnown RBP8.96□□□□□ -0.98
SCFD1-207ENST00000544052 DCAF8L2P0C7V8 631 aa8.95□□□□□ -0.98
SCFD1-207ENST00000544052 KLHL34Q8N239 644 aa8.94□□□□□ -0.98
SCFD1-207ENST00000544052 CREBZFQ9NS37 354 aa8.92□□□□□ -0.98
SCFD1-207ENST00000544052 PLCB2Q00722 1185 aa8.9□□□□□ -0.99
SCFD1-207ENST00000544052 PLCD3Q8N3E9 789 aa8.89□□□□□ -0.99
SCFD1-207ENST00000544052 SPOCK2Q92563 424 aa8.89□□□□□ -0.99
SCFD1-207ENST00000544052 CLCN6P51797 869 aa8.88□□□□□ -0.99
SCFD1-207ENST00000544052 MIER1Q8N108 512 aa8.87□□□□□ -0.99
SCFD1-207ENST00000544052 ZRANB1Q9UGI0 708 aa8.83□□□□□ -1
SCFD1-207ENST00000544052 ECM2O94769 699 aaPredicted RBP8.82□□□□□ -1
SCFD1-207ENST00000544052 ZNF579Q8NAF0 562 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms