RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 NISCHQ9Y2I1 1504 aa38.81■■■■□ 3.8
HDDC3-206ENST00000561036 CCDC180Q9P1Z9 1646 aa33.89■■■■□ 3.02
HDDC3-206ENST00000561036 ZCCHC6Q5VYS8 1495 aaKnown RBP32.61■■■□□ 2.81
HDDC3-206ENST00000561036 DCAF1Q9Y4B6 1507 aa32.2■■■□□ 2.74
HDDC3-206ENST00000561036 DCAF8L2P0C7V8 631 aa31.88■■■□□ 2.69
HDDC3-206ENST00000561036 ABCC9O60706 1549 aa31.88■■■□□ 2.69
HDDC3-206ENST00000561036 MYO15BQ96JP2 1530 aa31.83■■■□□ 2.69
HDDC3-206ENST00000561036 NACADO15069 1562 aa31.57■■■□□ 2.64
HDDC3-206ENST00000561036 SHROOM4Q9ULL8 1493 aa31.47■■■□□ 2.63
HDDC3-206ENST00000561036 RB1CC1Q8TDY2 1594 aa31.26■■■□□ 2.6
HDDC3-206ENST00000561036 SCRIBQ14160 1630 aa31.02■■■□□ 2.56
HDDC3-206ENST00000561036 UNC13AQ9UPW8 1703 aa30.52■■■□□ 2.48
HDDC3-206ENST00000561036 SUPT5HO00267 1087 aaKnown RBP30.32■■■□□ 2.44
HDDC3-206ENST00000561036 BICRAQ9NZM4 1560 aa30.26■■■□□ 2.43
HDDC3-206ENST00000561036 RSF1Q96T23 1441 aaPredicted RBP30.09■■■□□ 2.41
HDDC3-206ENST00000561036 CECR2Q9BXF3 1484 aa30.06■■■□□ 2.4
HDDC3-206ENST00000561036 PABPN1Q86U42 306 aaKnown RBP eCLIP30.03■■■□□ 2.4
HDDC3-206ENST00000561036 BAZ1AQ9NRL2 1556 aaPredicted RBP29.98■■■□□ 2.39
HDDC3-206ENST00000561036 MROH2BQ7Z745 1585 aa29.92■■■□□ 2.38
HDDC3-206ENST00000561036 SMARCA4P51532 1647 aa29.81■■■□□ 2.36
HDDC3-206ENST00000561036 WIZO95785 1651 aa29.66■■■□□ 2.34
HDDC3-206ENST00000561036 PEG3Q9GZU2 1588 aa29.52■■■□□ 2.32
HDDC3-206ENST00000561036 TOP2AP11388 1531 aaKnown RBP29.44■■■□□ 2.3
HDDC3-206ENST00000561036 SMARCA2P51531 1590 aa29.36■■■□□ 2.29
HDDC3-206ENST00000561036 EIF4G1Q04637 1599 aaKnown RBP29.35■■■□□ 2.29
HDDC3-206ENST00000561036 ATAD2BQ9ULI0 1458 aa29.33■■■□□ 2.29
HDDC3-206ENST00000561036 BAZ1BQ9UIG0 1483 aaKnown RBP29.16■■■□□ 2.26
HDDC3-206ENST00000561036 CHIC1Q5VXU3 224 aa29.13■■■□□ 2.25
HDDC3-206ENST00000561036 NCAPD3P42695 1498 aa29.12■■■□□ 2.25
HDDC3-206ENST00000561036 CCDC88BA6NC98 1476 aa29.1■■■□□ 2.25
HDDC3-206ENST00000561036 HMGXB3Q12766 1538 aa29.09■■■□□ 2.25
HDDC3-206ENST00000561036 CC2D2AQ9P2K1 1620 aa28.89■■■□□ 2.22
HDDC3-206ENST00000561036 TRIM41Q8WV44 630 aa28.61■■■□□ 2.17
HDDC3-206ENST00000561036 CFTRP13569 1480 aa28.46■■■□□ 2.15
HDDC3-206ENST00000561036 ABCC8Q09428 1581 aa28.41■■■□□ 2.14
HDDC3-206ENST00000561036 CADPSQ9ULU8 1353 aa28.35■■■□□ 2.13
HDDC3-206ENST00000561036 WRNQ14191 1432 aaPredicted RBP eCLIP28.32■■■□□ 2.12
HDDC3-206ENST00000561036 PRDM2Q13029 1718 aa28.31■■■□□ 2.12
HDDC3-206ENST00000561036 SYNJ1O43426 1573 aa28.16■■■□□ 2.1
HDDC3-206ENST00000561036 LAMC3Q9Y6N6 1575 aa28.12■■■□□ 2.09
HDDC3-206ENST00000561036 TOP2BQ02880 1626 aa28.11■■■□□ 2.09
HDDC3-206ENST00000561036 BIVM-ERCC5R4GMW8 1640 aa28.09■■■□□ 2.09
HDDC3-206ENST00000561036 DNAJC5BQ9UF47 199 aa28.05■■■□□ 2.08
HDDC3-206ENST00000561036 EEA1Q15075 1411 aa28.02■■■□□ 2.08
HDDC3-206ENST00000561036 FANCD2Q9BXW9 1451 aa28.01■■■□□ 2.07
HDDC3-206ENST00000561036 CUX1P39880 1505 aa27.99■■■□□ 2.07
HDDC3-206ENST00000561036 NESP48681 1621 aa27.97■■■□□ 2.07
HDDC3-206ENST00000561036 FAM9AQ8IZU1 332 aaPredicted RBP27.96■■■□□ 2.07
HDDC3-206ENST00000561036 LOC105371045A0A1W2PR82 267 aa27.92■■■□□ 2.06
HDDC3-206ENST00000561036 SOGA1O94964 1423 aa27.91■■■□□ 2.06
HDDC3-206ENST00000561036 PDS5BQ9NTI5 1447 aa27.91■■■□□ 2.06
HDDC3-206ENST00000561036 CEP164Q9UPV0 1460 aa27.84■■■□□ 2.05
HDDC3-206ENST00000561036 DNMBPQ6XZF7 1577 aa27.79■■■□□ 2.04
HDDC3-206ENST00000561036 CSRNP3Q8WYN3 585 aa27.78■■■□□ 2.04
HDDC3-206ENST00000561036 RUSC2Q8N2Y8 1516 aa27.77■■■□□ 2.04
HDDC3-206ENST00000561036 TOPBP1Q92547 1522 aa27.71■■■□□ 2.03
HDDC3-206ENST00000561036 FGD5Q6ZNL6 1462 aa27.69■■■□□ 2.02
HDDC3-206ENST00000561036 KIF21AQ7Z4S6 1674 aa27.67■■■□□ 2.02
HDDC3-206ENST00000561036 KIF27Q86VH2 1401 aa27.64■■■□□ 2.02
HDDC3-206ENST00000561036 URB2Q14146 1524 aaKnown RBP27.63■■■□□ 2.01
HDDC3-206ENST00000561036 KIF21BO75037 1637 aa27.6■■■□□ 2.01
HDDC3-206ENST00000561036 POLA1P09884 1462 aaPredicted RBP27.56■■■□□ 2
HDDC3-206ENST00000561036 GOLGA3Q08378 1498 aa27.56■■■□□ 2
HDDC3-206ENST00000561036 MRC2Q9UBG0 1479 aa27.52■■■□□ 2
HDDC3-206ENST00000561036 CUX2O14529 1486 aa27.51■■□□□ 1.99
HDDC3-206ENST00000561036 ABCA10Q8WWZ4 1543 aa27.5■■□□□ 1.99
HDDC3-206ENST00000561036 TNIKQ9UKE5 1360 aa27.49■■□□□ 1.99
HDDC3-206ENST00000561036 EHMT2Q96KQ7 1210 aa27.46■■□□□ 1.99
HDDC3-206ENST00000561036 PRXQ9BXM0 1461 aa27.45■■□□□ 1.99
HDDC3-206ENST00000561036 ERICH3Q5RHP9 1530 aa27.43■■□□□ 1.98
HDDC3-206ENST00000561036 RAD54L2Q9Y4B4 1467 aa27.42■■□□□ 1.98
HDDC3-206ENST00000561036 WDR62O43379 1518 aa27.38■■□□□ 1.97
HDDC3-206ENST00000561036 ERCC6Q03468 1493 aa27.38■■□□□ 1.97
HDDC3-206ENST00000561036 IGF1RP08069 1367 aa27.37■■□□□ 1.97
HDDC3-206ENST00000561036 UBTFP17480 764 aaKnown RBP27.37■■□□□ 1.97
HDDC3-206ENST00000561036 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
HDDC3-206ENST00000561036 RAPGEF2Q9Y4G8 1499 aa27.36■■□□□ 1.97
HDDC3-206ENST00000561036 TARBP1Q13395 1621 aaKnown RBP27.3■■□□□ 1.96
HDDC3-206ENST00000561036 CEP162Q5TB80 1403 aa27.29■■□□□ 1.96
HDDC3-206ENST00000561036 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.95
HDDC3-206ENST00000561036 ABCA5Q8WWZ7 1642 aa27.24■■□□□ 1.95
HDDC3-206ENST00000561036 CARMIL1Q5VZK9 1371 aa27.23■■□□□ 1.95
HDDC3-206ENST00000561036 IFT140Q96RY7 1462 aa27.2■■□□□ 1.95
HDDC3-206ENST00000561036 CUL7Q14999 1698 aa27.2■■□□□ 1.94
HDDC3-206ENST00000561036 GAPVD1Q14C86 1478 aa27.19■■□□□ 1.94
HDDC3-206ENST00000561036 TDRD9Q8NDG6 1382 aaKnown RBP27.16■■□□□ 1.94
HDDC3-206ENST00000561036 CLIP1P30622 1438 aa27.09■■□□□ 1.93
HDDC3-206ENST00000561036 PBRM1Q86U86 1689 aa27.01■■□□□ 1.91
HDDC3-206ENST00000561036 GRIN2BQ13224 1484 aa27■■□□□ 1.91
HDDC3-206ENST00000561036 AQRO60306 1485 aaKnown RBP eCLIP26.98■■□□□ 1.914e-8■■■■■ 34.1
HDDC3-206ENST00000561036 ZNF608Q9ULD9 1512 aaPredicted RBP26.95■■□□□ 1.9
HDDC3-206ENST00000561036 FHAD1B1AJZ9 1412 aa26.93■■□□□ 1.9
HDDC3-206ENST00000561036 EIF4G3O43432 1585 aaKnown RBP26.89■■□□□ 1.9
HDDC3-206ENST00000561036 ADAMTS12P58397 1594 aa26.88■■□□□ 1.89
HDDC3-206ENST00000561036 VPS8Q8N3P4 1428 aa26.88■■□□□ 1.89
HDDC3-206ENST00000561036 CTTNBP2Q8WZ74 1663 aa26.84■■□□□ 1.89
HDDC3-206ENST00000561036 ARAP1Q96P48 1450 aa26.81■■□□□ 1.88
HDDC3-206ENST00000561036 ARHGAP35Q9NRY4 1499 aa26.81■■□□□ 1.88
HDDC3-206ENST00000561036 MAGI1Q96QZ7 1491 aaPredicted RBP26.79■■□□□ 1.88
HDDC3-206ENST00000561036 RANGAP1P46060 587 aaPredicted RBP26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms