RNA–Protein interactions for RNA: ENST00000454132.5

LMBR1-213, Transcript of limb development membrane protein 1, human

TSL 2

Gene LMBR1, Length 2,922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-213	ENST00000454132	NISCH	Q9Y2I1	1504 aa		37.87	■■■■□ 3.65
LMBR1-213	ENST00000454132	SHROOM4	Q9ULL8	1493 aa		33.92	■■■■□ 3.02
LMBR1-213	ENST00000454132	SUPT5H	O00267	1087 aa	Known RBP	33.62	■■■□□ 2.97
LMBR1-213	ENST00000454132	HRC	P23327	699 aa		32.95	■■■□□ 2.87
LMBR1-213	ENST00000454132	PCGF6	Q9BYE7	350 aa		32.81	■■■□□ 2.84
LMBR1-213	ENST00000454132	MYO15B	Q96JP2	1530 aa		32.76	■■■□□ 2.84
LMBR1-213	ENST00000454132	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.72	■■■□□ 2.83
LMBR1-213	ENST00000454132	CHIC1	Q5VXU3	224 aa		32.63	■■■□□ 2.81
LMBR1-213	ENST00000454132	DCAF8L2	P0C7V8	631 aa		32.4	■■■□□ 2.78
LMBR1-213	ENST00000454132	LOC105371045	A0A1W2PR82	267 aa		32.13	■■■□□ 2.73
LMBR1-213	ENST00000454132	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.08	■■■□□ 2.73
LMBR1-213	ENST00000454132	DCAF1	Q9Y4B6	1507 aa		31.57	■■■□□ 2.64
LMBR1-213	ENST00000454132	TRIM26	Q12899	539 aa	Predicted RBP	31.53	■■■□□ 2.64
LMBR1-213	ENST00000454132	EHMT2	Q96KQ7	1210 aa		31.35	■■■□□ 2.61
LMBR1-213	ENST00000454132	CCDC180	Q9P1Z9	1646 aa		31.33	■■■□□ 2.61
LMBR1-213	ENST00000454132	FAM9A	Q8IZU1	332 aa	Predicted RBP	31.21	■■■□□ 2.59
LMBR1-213	ENST00000454132	SCAF1	Q9H7N4	1312 aa	Known RBP	31.1	■■■□□ 2.57
LMBR1-213	ENST00000454132	ZEB1	P37275	1124 aa	Predicted RBP	30.94	■■■□□ 2.54
LMBR1-213	ENST00000454132	TRIM41	Q8WV44	630 aa		30.92	■■■□□ 2.54
LMBR1-213	ENST00000454132	PELP1	Q8IZL8	1130 aa	Known RBP	30.81	■■■□□ 2.52
LMBR1-213	ENST00000454132	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	30.58	■■■□□ 2.49
LMBR1-213	ENST00000454132	RSF1	Q96T23	1441 aa	Predicted RBP	30.48	■■■□□ 2.47
LMBR1-213	ENST00000454132	TTBK1	Q5TCY1	1321 aa	Predicted RBP	30.45	■■■□□ 2.46
LMBR1-213	ENST00000454132	NEUROD1	Q13562	356 aa		30.45	■■■□□ 2.46
LMBR1-213	ENST00000454132	ABCC9	O60706	1549 aa		30.4	■■■□□ 2.46
LMBR1-213	ENST00000454132	CCER1	Q8TC90	406 aa	Predicted RBP	30.4	■■■□□ 2.46
LMBR1-213	ENST00000454132	RB1CC1	Q8TDY2	1594 aa		30.35	■■■□□ 2.45
LMBR1-213	ENST00000454132	ACIN1	Q9UKV3	1341 aa	Known RBP	30.35	■■■□□ 2.45
LMBR1-213	ENST00000454132	SCRIB	Q14160	1630 aa		30.31	■■■□□ 2.44
LMBR1-213	ENST00000454132	GTF3C3	Q9Y5Q9	886 aa		30.25	■■■□□ 2.43
LMBR1-213	ENST00000454132	DIEXF	Q68CQ4	756 aa	Known RBP	30.15	■■■□□ 2.42
LMBR1-213	ENST00000454132	CENPB	P07199	599 aa	Predicted RBP	29.96	■■■□□ 2.39
LMBR1-213	ENST00000454132	YTHDC1	Q96MU7	727 aa	Known RBP	29.95	■■■□□ 2.39
LMBR1-213	ENST00000454132	CECR2	Q9BXF3	1484 aa		29.9	■■■□□ 2.38
LMBR1-213	ENST00000454132	MROH2B	Q7Z745	1585 aa		29.73	■■■□□ 2.35
LMBR1-213	ENST00000454132	WIZ	O95785	1651 aa		29.63	■■■□□ 2.33
LMBR1-213	ENST00000454132	ZNF316	A6NFI3	1004 aa	Predicted RBP	29.57	■■■□□ 2.32
LMBR1-213	ENST00000454132	MIER1	Q8N108	512 aa		29.5	■■■□□ 2.31
LMBR1-213	ENST00000454132	UBTF	P17480	764 aa	Known RBP	29.48	■■■□□ 2.31
LMBR1-213	ENST00000454132	HNRNPUL2	Q1KMD3	747 aa	Known RBP	29.46	■■■□□ 2.31
LMBR1-213	ENST00000454132	ABCC8	Q09428	1581 aa		29.45	■■■□□ 2.3
LMBR1-213	ENST00000454132	CEP162	Q5TB80	1403 aa		29.43	■■■□□ 2.3
LMBR1-213	ENST00000454132	CCDC88B	A6NC98	1476 aa		29.42	■■■□□ 2.3
LMBR1-213	ENST00000454132	SOGA1	O94964	1423 aa		29.36	■■■□□ 2.29
LMBR1-213	ENST00000454132	MYT1	Q01538	1121 aa		29.32	■■■□□ 2.28
LMBR1-213	ENST00000454132	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.24	■■■□□ 2.27	2e-6	■■■■■ 59.6
LMBR1-213	ENST00000454132	RANGAP1	P46060	587 aa	Predicted RBP	29.24	■■■□□ 2.27
LMBR1-213	ENST00000454132	RUSC2	Q8N2Y8	1516 aa		29.24	■■■□□ 2.27
LMBR1-213	ENST00000454132	CSRNP3	Q8WYN3	585 aa		29.19	■■■□□ 2.26
LMBR1-213	ENST00000454132	EIF4G1	Q04637	1599 aa	Known RBP	29.14	■■■□□ 2.26
LMBR1-213	ENST00000454132	TNIK	Q9UKE5	1360 aa		29.13	■■■□□ 2.25
LMBR1-213	ENST00000454132	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.13	■■■□□ 2.25
LMBR1-213	ENST00000454132	NACAD	O15069	1562 aa		28.97	■■■□□ 2.23
LMBR1-213	ENST00000454132	APLP2	Q06481	763 aa		28.84	■■■□□ 2.21
LMBR1-213	ENST00000454132	GOLGA3	Q08378	1498 aa		28.83	■■■□□ 2.21
LMBR1-213	ENST00000454132	TOP2A	P11388	1531 aa	Known RBP	28.82	■■■□□ 2.2
LMBR1-213	ENST00000454132	SMARCA2	P51531	1590 aa		28.82	■■■□□ 2.2
LMBR1-213	ENST00000454132	SUPT16H	Q9Y5B9	1047 aa	Known RBP	28.78	■■■□□ 2.2
LMBR1-213	ENST00000454132	CLIP1	P30622	1438 aa		28.72	■■■□□ 2.19
LMBR1-213	ENST00000454132	EEA1	Q15075	1411 aa		28.69	■■■□□ 2.18
LMBR1-213	ENST00000454132	SMARCA4	P51532	1647 aa		28.65	■■■□□ 2.18
LMBR1-213	ENST00000454132	PABPN1	Q86U42	306 aa	Known RBP eCLIP	28.61	■■■□□ 2.17
LMBR1-213	ENST00000454132	BCAN	Q96GW7	911 aa		28.59	■■■□□ 2.17
LMBR1-213	ENST00000454132	KCNH8	Q96L42	1107 aa		28.59	■■■□□ 2.17
LMBR1-213	ENST00000454132	TSHZ2	Q9NRE2	1034 aa		28.54	■■■□□ 2.16
LMBR1-213	ENST00000454132	VPS8	Q8N3P4	1428 aa		28.54	■■■□□ 2.16
LMBR1-213	ENST00000454132	ITGAE	P38570	1179 aa		28.54	■■■□□ 2.16
LMBR1-213	ENST00000454132	CEP164	Q9UPV0	1460 aa		28.53	■■■□□ 2.16
LMBR1-213	ENST00000454132	RAPGEF2	Q9Y4G8	1499 aa		28.49	■■■□□ 2.15
LMBR1-213	ENST00000454132	DHX57	Q6P158	1386 aa	Known RBP	28.48	■■■□□ 2.15
LMBR1-213	ENST00000454132	KANK4	Q5T7N3	995 aa	Predicted RBP	28.46	■■■□□ 2.15
LMBR1-213	ENST00000454132	SYNJ1	O43426	1573 aa		28.43	■■■□□ 2.14
LMBR1-213	ENST00000454132	KIF21B	O75037	1637 aa		28.33	■■■□□ 2.13
LMBR1-213	ENST00000454132	ANP32E	Q9BTT0	268 aa		28.31	■■■□□ 2.12
LMBR1-213	ENST00000454132	FKBP8	Q14318	412 aa		28.25	■■■□□ 2.11
LMBR1-213	ENST00000454132	CLSPN	Q9HAW4	1339 aa		28.22	■■■□□ 2.11
LMBR1-213	ENST00000454132	HIRIP3	Q9BW71	556 aa	Predicted RBP	28.19	■■■□□ 2.1
LMBR1-213	ENST00000454132	DDX10	Q13206	875 aa	Known RBP	28.19	■■■□□ 2.1
LMBR1-213	ENST00000454132	UNC13A	Q9UPW8	1703 aa		28.16	■■■□□ 2.1
LMBR1-213	ENST00000454132	BAZ1B	Q9UIG0	1483 aa	Known RBP	28.12	■■■□□ 2.09
LMBR1-213	ENST00000454132	TRIM52	Q96A61	297 aa		28.07	■■■□□ 2.08
LMBR1-213	ENST00000454132	ARAP1	Q96P48	1450 aa		28.06	■■■□□ 2.08
LMBR1-213	ENST00000454132	SIN3A	Q96ST3	1273 aa		28.05	■■■□□ 2.08
LMBR1-213	ENST00000454132	BCL11A	Q9H165	835 aa		28.05	■■■□□ 2.08
LMBR1-213	ENST00000454132	CCNB3	Q8WWL7	1395 aa		27.97	■■■□□ 2.07
LMBR1-213	ENST00000454132	RAB3GAP2	Q9H2M9	1393 aa		27.95	■■■□□ 2.06
LMBR1-213	ENST00000454132	RBM19	Q9Y4C8	960 aa	Known RBP	27.93	■■■□□ 2.06
LMBR1-213	ENST00000454132	RRBP1	Q9P2E9	1410 aa	Known RBP	27.9	■■■□□ 2.06
LMBR1-213	ENST00000454132	NEFL	P07196	543 aa		27.88	■■■□□ 2.05
LMBR1-213	ENST00000454132	FAM50A	Q14320	339 aa	Known RBP	27.87	■■■□□ 2.05
LMBR1-213	ENST00000454132	ATP1B4	Q9UN42	357 aa	Predicted RBP	27.85	■■■□□ 2.05
LMBR1-213	ENST00000454132	ATAD2B	Q9ULI0	1458 aa		27.84	■■■□□ 2.05
LMBR1-213	ENST00000454132	PRX	Q9BXM0	1461 aa		27.81	■■■□□ 2.04
LMBR1-213	ENST00000454132	BICRA	Q9NZM4	1560 aa		27.81	■■■□□ 2.04
LMBR1-213	ENST00000454132	IRX6	P78412	446 aa	Predicted RBP	27.8	■■■□□ 2.04
LMBR1-213	ENST00000454132	WDR97	A6NE52	1622 aa		27.79	■■■□□ 2.04
LMBR1-213	ENST00000454132	MAPKBP1	O60336	1514 aa		27.78	■■■□□ 2.04
LMBR1-213	ENST00000454132	TOP2B	Q02880	1626 aa		27.76	■■■□□ 2.03
LMBR1-213	ENST00000454132	P3H3	Q8IVL6	736 aa		27.75	■■■□□ 2.03
LMBR1-213	ENST00000454132	PPP1R15A	O75807	674 aa	Predicted RBP	27.74	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms