RNA–Protein interactions for RNA: ENST00000415428.5

LMBR1-204, Transcript of limb development membrane protein 1, humanhuman

TSL 1 (best)

Gene LMBR1, Length 3,457 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-204ENST00000415428 NISCHQ9Y2I1 1504 aa17.66■□□□□ 0.42
LMBR1-204ENST00000415428 CCDC180Q9P1Z9 1646 aa16.7■□□□□ 0.26
LMBR1-204ENST00000415428 ABCC9O60706 1549 aa15.75■□□□□ 0.11
LMBR1-204ENST00000415428 MYO15BQ96JP2 1530 aa15.72■□□□□ 0.11
LMBR1-204ENST00000415428 SHROOM4Q9ULL8 1493 aa15.64■□□□□ 0.09
LMBR1-204ENST00000415428 RB1CC1Q8TDY2 1594 aa15.61■□□□□ 0.09
LMBR1-204ENST00000415428 NACADO15069 1562 aa15.58■□□□□ 0.08
LMBR1-204ENST00000415428 UNC13AQ9UPW8 1703 aa15.47■□□□□ 0.07
LMBR1-204ENST00000415428 BICRAQ9NZM4 1560 aa15.28■□□□□ 0.04
LMBR1-204ENST00000415428 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
LMBR1-204ENST00000415428 DNAJC5BQ9UF47 199 aa15.12■□□□□ 0.01
LMBR1-204ENST00000415428 CC2D2AQ9P2K1 1620 aa14.78□□□□□ -0.04
LMBR1-204ENST00000415428 EIF4G1Q04637 1599 aaKnown RBP14.72□□□□□ -0.05
LMBR1-204ENST00000415428 ZCCHC6Q5VYS8 1495 aaKnown RBP14.69□□□□□ -0.06
LMBR1-204ENST00000415428 CUX2O14529 1486 aa14.61□□□□□ -0.07
LMBR1-204ENST00000415428 CECR2Q9BXF3 1484 aa14.54□□□□□ -0.08
LMBR1-204ENST00000415428 DNAJC5Q9H3Z4 198 aa14.49□□□□□ -0.09
LMBR1-204ENST00000415428 HMGXB3Q12766 1538 aa14.31□□□□□ -0.12
LMBR1-204ENST00000415428 PEG3Q9GZU2 1588 aa14.3□□□□□ -0.12
LMBR1-204ENST00000415428 THOC2Q8NI27 1593 aaKnown RBP14.24□□□□□ -0.13
LMBR1-204ENST00000415428 NCAPD3P42695 1498 aa14.23□□□□□ -0.13
LMBR1-204ENST00000415428 SMARCA2P51531 1590 aa14.2□□□□□ -0.14
LMBR1-204ENST00000415428 SCRIBQ14160 1630 aa14.16□□□□□ -0.14
LMBR1-204ENST00000415428 PABPN1Q86U42 306 aaKnown RBP eCLIP14.12□□□□□ -0.15
LMBR1-204ENST00000415428 LAMC3Q9Y6N6 1575 aa14.07□□□□□ -0.16
LMBR1-204ENST00000415428 SMARCA4P51532 1647 aa13.95□□□□□ -0.18
LMBR1-204ENST00000415428 WDR62O43379 1518 aa13.92□□□□□ -0.18
LMBR1-204ENST00000415428 ATAD2BQ9ULI0 1458 aa13.9□□□□□ -0.18
LMBR1-204ENST00000415428 PRDM2Q13029 1718 aa13.86□□□□□ -0.19
LMBR1-204ENST00000415428 KIF21AQ7Z4S6 1674 aa13.82□□□□□ -0.2
LMBR1-204ENST00000415428 BAZ1AQ9NRL2 1556 aaPredicted RBP13.78□□□□□ -0.2
LMBR1-204ENST00000415428 WDR97A6NE52 1622 aa13.67□□□□□ -0.22
LMBR1-204ENST00000415428 MRC2Q9UBG0 1479 aa13.64□□□□□ -0.23
LMBR1-204ENST00000415428 ERCC6Q03468 1493 aa13.63□□□□□ -0.23
LMBR1-204ENST00000415428 PDS5BQ9NTI5 1447 aa13.57□□□□□ -0.24
LMBR1-204ENST00000415428 BAZ1BQ9UIG0 1483 aaKnown RBP13.54□□□□□ -0.24
LMBR1-204ENST00000415428 NESP48681 1621 aa13.51□□□□□ -0.25
LMBR1-204ENST00000415428 RIMBP3CA6NJZ7 1639 aa13.47□□□□□ -0.25
LMBR1-204ENST00000415428 RIMBP3BA6NNM3 1639 aa13.47□□□□□ -0.25
LMBR1-204ENST00000415428 RIMBP3Q9UFD9 1639 aa13.47□□□□□ -0.25
LMBR1-204ENST00000415428 CFTRP13569 1480 aa13.43□□□□□ -0.26
LMBR1-204ENST00000415428 CADPSQ9ULU8 1353 aa13.42□□□□□ -0.26
LMBR1-204ENST00000415428 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
LMBR1-204ENST00000415428 CEP164Q9UPV0 1460 aa13.32□□□□□ -0.28
LMBR1-204ENST00000415428 RSF1Q96T23 1441 aaPredicted RBP13.32□□□□□ -0.28
LMBR1-204ENST00000415428 TOP2AP11388 1531 aaKnown RBP13.3□□□□□ -0.28
LMBR1-204ENST00000415428 CLASP1Q7Z460 1538 aa13.3□□□□□ -0.28
LMBR1-204ENST00000415428 TARBP1Q13395 1621 aaKnown RBP13.3□□□□□ -0.28
LMBR1-204ENST00000415428 ABCC8Q09428 1581 aa13.28□□□□□ -0.28
LMBR1-204ENST00000415428 URB2Q14146 1524 aaKnown RBP13.28□□□□□ -0.28
LMBR1-204ENST00000415428 IFT140Q96RY7 1462 aa13.28□□□□□ -0.28
LMBR1-204ENST00000415428 ARHGEF11O15085 1522 aa13.25□□□□□ -0.29
LMBR1-204ENST00000415428 FANCD2Q9BXW9 1451 aa13.23□□□□□ -0.29
LMBR1-204ENST00000415428 EIF4G3O43432 1585 aaKnown RBP13.2□□□□□ -0.3
LMBR1-204ENST00000415428 CHD1O14646 1710 aa13.2□□□□□ -0.3
LMBR1-204ENST00000415428 DCAF8L2P0C7V8 631 aa13.2□□□□□ -0.3
LMBR1-204ENST00000415428 DNMBPQ6XZF7 1577 aa13.18□□□□□ -0.3
LMBR1-204ENST00000415428 WIZO95785 1651 aa13.17□□□□□ -0.3
LMBR1-204ENST00000415428 SHROOM2Q13796 1616 aa13.1□□□□□ -0.31
LMBR1-204ENST00000415428 ARAP1Q96P48 1450 aa13.09□□□□□ -0.31
LMBR1-204ENST00000415428 TOPBP1Q92547 1522 aa13.05□□□□□ -0.32
LMBR1-204ENST00000415428 OSCARQ8IYS5 282 aa13.02□□□□□ -0.32
LMBR1-204ENST00000415428 MAGI1Q96QZ7 1491 aaPredicted RBP12.99□□□□□ -0.33
LMBR1-204ENST00000415428 SYNJ1O43426 1573 aa12.98□□□□□ -0.33
LMBR1-204ENST00000415428 PBRM1Q86U86 1689 aa12.96□□□□□ -0.33
LMBR1-204ENST00000415428 ABCA5Q8WWZ7 1642 aa12.96□□□□□ -0.33
LMBR1-204ENST00000415428 KIF13AQ9H1H9 1805 aa12.94□□□□□ -0.34
LMBR1-204ENST00000415428 ZNF608Q9ULD9 1512 aaPredicted RBP12.91□□□□□ -0.34
LMBR1-204ENST00000415428 MAPKBP1O60336 1514 aa12.83□□□□□ -0.36
LMBR1-204ENST00000415428 POLA1P09884 1462 aaPredicted RBP12.82□□□□□ -0.36
LMBR1-204ENST00000415428 SYNJ2O15056 1496 aa12.81□□□□□ -0.36
LMBR1-204ENST00000415428 CCDC88BA6NC98 1476 aa12.79□□□□□ -0.36
LMBR1-204ENST00000415428 BIVM-ERCC5R4GMW8 1640 aa12.78□□□□□ -0.36
LMBR1-204ENST00000415428 NUP160Q12769 1436 aa12.77□□□□□ -0.37
LMBR1-204ENST00000415428 ADAMTS12P58397 1594 aa12.76□□□□□ -0.37
LMBR1-204ENST00000415428 ABCA10Q8WWZ4 1543 aa12.76□□□□□ -0.37
LMBR1-204ENST00000415428 GRIN2BQ13224 1484 aa12.74□□□□□ -0.37
LMBR1-204ENST00000415428 GLI2P10070 1586 aa12.72□□□□□ -0.37
LMBR1-204ENST00000415428 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
LMBR1-204ENST00000415428 ERICH3Q5RHP9 1530 aa12.68□□□□□ -0.38
LMBR1-204ENST00000415428 SNAPC4Q5SXM2 1469 aa12.67□□□□□ -0.38
LMBR1-204ENST00000415428 CUX1P39880 1505 aa12.66□□□□□ -0.38
LMBR1-204ENST00000415428 DIP2BQ9P265 1576 aa12.66□□□□□ -0.38
LMBR1-204ENST00000415428 CEP170Q5SW79 1584 aa12.66□□□□□ -0.38
LMBR1-204ENST00000415428 PPRC1Q5VV67 1664 aaKnown RBP12.65□□□□□ -0.38
LMBR1-204ENST00000415428 RUSC2Q8N2Y8 1516 aa12.62□□□□□ -0.39
LMBR1-204ENST00000415428 ERCC6L2Q5T890 1561 aa12.61□□□□□ -0.39
LMBR1-204ENST00000415428 GAPVD1Q14C86 1478 aa12.61□□□□□ -0.39
LMBR1-204ENST00000415428 FGD5Q6ZNL6 1462 aa12.58□□□□□ -0.4
LMBR1-204ENST00000415428 ABCC10Q5T3U5 1492 aa12.58□□□□□ -0.4
LMBR1-204ENST00000415428 GRIN2AQ12879 1464 aa12.58□□□□□ -0.4
LMBR1-204ENST00000415428 TOP2BQ02880 1626 aa12.57□□□□□ -0.4
LMBR1-204ENST00000415428 AQRO60306 1485 aaKnown RBP eCLIP12.56□□□□□ -0.45e-8■■■■■ 28.3
LMBR1-204ENST00000415428 MAP3K4Q9Y6R4 1608 aa12.53□□□□□ -0.4
LMBR1-204ENST00000415428 ADCY10Q96PN6 1610 aa12.52□□□□□ -0.41
LMBR1-204ENST00000415428 SOGA1O94964 1423 aa12.51□□□□□ -0.41
LMBR1-204ENST00000415428 UHRF1BP1LA0JNW5 1464 aa12.51□□□□□ -0.41
LMBR1-204ENST00000415428 CUL7Q14999 1698 aa12.47□□□□□ -0.41
LMBR1-204ENST00000415428 FHAD1B1AJZ9 1412 aa12.46□□□□□ -0.41
LMBR1-204ENST00000415428 KIAA0586Q9BVV6 1533 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms