RNA–Protein interactions for RNA: ENST00000297518.4

CDK5-201, Transcript of cyclin dependent kinase 5, humanhuman

TSL 1 (best) BASIC

Gene CDK5, Length 783 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5-201ENST00000297518 NISCHQ9Y2I1 1504 aa29.28■■■□□ 2.28
CDK5-201ENST00000297518 CCDC180Q9P1Z9 1646 aa26.1■■□□□ 1.77
CDK5-201ENST00000297518 ABCC9O60706 1549 aa25.57■■□□□ 1.68
CDK5-201ENST00000297518 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
CDK5-201ENST00000297518 NACADO15069 1562 aa24.54■■□□□ 1.52
CDK5-201ENST00000297518 DCAF8L2P0C7V8 631 aa24.44■■□□□ 1.5
CDK5-201ENST00000297518 ZCCHC6Q5VYS8 1495 aaKnown RBP24.38■■□□□ 1.49
CDK5-201ENST00000297518 MYO15BQ96JP2 1530 aa24.36■■□□□ 1.49
CDK5-201ENST00000297518 DCAF1Q9Y4B6 1507 aa24.24■■□□□ 1.47
CDK5-201ENST00000297518 UNC13AQ9UPW8 1703 aa24.04■■□□□ 1.44
CDK5-201ENST00000297518 BICRAQ9NZM4 1560 aa23.84■■□□□ 1.41
CDK5-201ENST00000297518 PABPN1Q86U42 306 aaKnown RBP eCLIP23.84■■□□□ 1.41
CDK5-201ENST00000297518 SCRIBQ14160 1630 aa23.79■■□□□ 1.4
CDK5-201ENST00000297518 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
CDK5-201ENST00000297518 DNAJC5BQ9UF47 199 aa23.48■■□□□ 1.35
CDK5-201ENST00000297518 EIF4G1Q04637 1599 aaKnown RBP23.22■■□□□ 1.31
CDK5-201ENST00000297518 CC2D2AQ9P2K1 1620 aa23.13■■□□□ 1.29
CDK5-201ENST00000297518 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
CDK5-201ENST00000297518 SMARCA4P51532 1647 aa22.75■■□□□ 1.23
CDK5-201ENST00000297518 BAZ1AQ9NRL2 1556 aaPredicted RBP22.71■■□□□ 1.23
CDK5-201ENST00000297518 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
CDK5-201ENST00000297518 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
CDK5-201ENST00000297518 SMARCA2P51531 1590 aa22.61■■□□□ 1.21
CDK5-201ENST00000297518 MROH2BQ7Z745 1585 aa22.56■■□□□ 1.2
CDK5-201ENST00000297518 HMGXB3Q12766 1538 aa22.53■■□□□ 1.2
CDK5-201ENST00000297518 PEG3Q9GZU2 1588 aa22.53■■□□□ 1.2
CDK5-201ENST00000297518 BAZ1BQ9UIG0 1483 aaKnown RBP22.45■■□□□ 1.18
CDK5-201ENST00000297518 WIZO95785 1651 aa22.33■■□□□ 1.16
CDK5-201ENST00000297518 RSF1Q96T23 1441 aaPredicted RBP22.27■■□□□ 1.16
CDK5-201ENST00000297518 NESP48681 1621 aa22.1■■□□□ 1.13
CDK5-201ENST00000297518 TOP2AP11388 1531 aaKnown RBP22.09■■□□□ 1.13
CDK5-201ENST00000297518 LAMC3Q9Y6N6 1575 aa22.06■■□□□ 1.12
CDK5-201ENST00000297518 ERCC6Q03468 1493 aa22.05■■□□□ 1.12
CDK5-201ENST00000297518 CADPSQ9ULU8 1353 aa21.95■■□□□ 1.1
CDK5-201ENST00000297518 PDS5BQ9NTI5 1447 aa21.89■■□□□ 1.1
CDK5-201ENST00000297518 KIF21AQ7Z4S6 1674 aa21.88■■□□□ 1.09
CDK5-201ENST00000297518 CUX2O14529 1486 aa21.85■■□□□ 1.09
CDK5-201ENST00000297518 CFTRP13569 1480 aa21.82■■□□□ 1.08
CDK5-201ENST00000297518 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
CDK5-201ENST00000297518 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
CDK5-201ENST00000297518 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
CDK5-201ENST00000297518 CEP164Q9UPV0 1460 aa21.71■■□□□ 1.07
CDK5-201ENST00000297518 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
CDK5-201ENST00000297518 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
CDK5-201ENST00000297518 WDR62O43379 1518 aa21.62■■□□□ 1.05
CDK5-201ENST00000297518 SUPT5HO00267 1087 aaKnown RBP21.62■■□□□ 1.05
CDK5-201ENST00000297518 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
CDK5-201ENST00000297518 TOPBP1Q92547 1522 aa21.36■■□□□ 1.01
CDK5-201ENST00000297518 ABCC8Q09428 1581 aa21.36■■□□□ 1.01
CDK5-201ENST00000297518 DNMBPQ6XZF7 1577 aa21.35■■□□□ 1.01
CDK5-201ENST00000297518 IFT140Q96RY7 1462 aa21.24■□□□□ 0.99
CDK5-201ENST00000297518 DNAJC5Q9H3Z4 198 aa21.22■□□□□ 0.99
CDK5-201ENST00000297518 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
CDK5-201ENST00000297518 CUX1P39880 1505 aa21.18■□□□□ 0.98
CDK5-201ENST00000297518 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
CDK5-201ENST00000297518 ZNF608Q9ULD9 1512 aaPredicted RBP21.14■□□□□ 0.98
CDK5-201ENST00000297518 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
CDK5-201ENST00000297518 EIF4G3O43432 1585 aaKnown RBP21.09■□□□□ 0.97
CDK5-201ENST00000297518 SOGA1O94964 1423 aa21.07■□□□□ 0.96
CDK5-201ENST00000297518 RAD54L2Q9Y4B4 1467 aa21.07■□□□□ 0.96
CDK5-201ENST00000297518 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.95
CDK5-201ENST00000297518 WRNQ14191 1432 aaPredicted RBP eCLIP21■□□□□ 0.95
CDK5-201ENST00000297518 BIVM-ERCC5R4GMW8 1640 aa21■□□□□ 0.95
CDK5-201ENST00000297518 WDR97A6NE52 1622 aa20.99■□□□□ 0.95
CDK5-201ENST00000297518 TOP2BQ02880 1626 aa20.99■□□□□ 0.95
CDK5-201ENST00000297518 SYNJ1O43426 1573 aa20.97■□□□□ 0.95
CDK5-201ENST00000297518 TDRD9Q8NDG6 1382 aaKnown RBP20.96■□□□□ 0.95
CDK5-201ENST00000297518 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
CDK5-201ENST00000297518 OSCARQ8IYS5 282 aa20.89■□□□□ 0.93
CDK5-201ENST00000297518 GRIN2BQ13224 1484 aa20.85■□□□□ 0.93
CDK5-201ENST00000297518 ABCA5Q8WWZ7 1642 aa20.85■□□□□ 0.93
CDK5-201ENST00000297518 CHD1O14646 1710 aa20.84■□□□□ 0.93
CDK5-201ENST00000297518 GAPVD1Q14C86 1478 aa20.84■□□□□ 0.93
CDK5-201ENST00000297518 PBRM1Q86U86 1689 aa20.83■□□□□ 0.93
CDK5-201ENST00000297518 SNAPC4Q5SXM2 1469 aa20.83■□□□□ 0.93
CDK5-201ENST00000297518 MAGI1Q96QZ7 1491 aaPredicted RBP20.81■□□□□ 0.92
CDK5-201ENST00000297518 FBLN2P98095 1184 aa20.76■□□□□ 0.91
CDK5-201ENST00000297518 SYNJ2O15056 1496 aa20.72■□□□□ 0.91
CDK5-201ENST00000297518 CHMP7Q8WUX9 453 aaPredicted RBP20.69■□□□□ 0.9
CDK5-201ENST00000297518 ERICH3Q5RHP9 1530 aa20.67■□□□□ 0.9
CDK5-201ENST00000297518 ADAMTS12P58397 1594 aa20.65■□□□□ 0.9
CDK5-201ENST00000297518 RIMBP3CA6NJZ7 1639 aa20.6■□□□□ 0.89
CDK5-201ENST00000297518 RIMBP3BA6NNM3 1639 aa20.6■□□□□ 0.89
CDK5-201ENST00000297518 RIMBP3Q9UFD9 1639 aa20.6■□□□□ 0.89
CDK5-201ENST00000297518 CLASP1Q7Z460 1538 aa20.6■□□□□ 0.89
CDK5-201ENST00000297518 FHAD1B1AJZ9 1412 aa20.6■□□□□ 0.89
CDK5-201ENST00000297518 ARHGEF11O15085 1522 aa20.59■□□□□ 0.89
CDK5-201ENST00000297518 GRIN2AQ12879 1464 aa20.58■□□□□ 0.89
CDK5-201ENST00000297518 KIF27Q86VH2 1401 aa20.57■□□□□ 0.88
CDK5-201ENST00000297518 TRIM41Q8WV44 630 aa20.5■□□□□ 0.87
CDK5-201ENST00000297518 NUP160Q12769 1436 aa20.49■□□□□ 0.87
CDK5-201ENST00000297518 CEP170Q5SW79 1584 aa20.49■□□□□ 0.87
CDK5-201ENST00000297518 CUL7Q14999 1698 aa20.48■□□□□ 0.87
CDK5-201ENST00000297518 IGF1RP08069 1367 aa20.47■□□□□ 0.87
CDK5-201ENST00000297518 ARAP1Q96P48 1450 aa20.42■□□□□ 0.86
CDK5-201ENST00000297518 CARMIL1Q5VZK9 1371 aa20.36■□□□□ 0.85
CDK5-201ENST00000297518 SHROOM2Q13796 1616 aa20.36■□□□□ 0.85
CDK5-201ENST00000297518 CYB5RLQ6IPT4 315 aa20.36■□□□□ 0.85
CDK5-201ENST00000297518 RUSC2Q8N2Y8 1516 aa20.36■□□□□ 0.85
CDK5-201ENST00000297518 ERCC6L2Q5T890 1561 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms