Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
MBD4O95243 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
MBD4O95243 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
MBD4O95243 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.92■■■□□ 2.54
MBD4O95243 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.92■■■□□ 2.54
MBD4O95243 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
MBD4O95243 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.92■■■□□ 2.54
MBD4O95243 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.92■■■□□ 2.54
MBD4O95243 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
MBD4O95243 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MBD4O95243 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MBD4O95243 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
MBD4O95243 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
MBD4O95243 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
MBD4O95243 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.9■■■□□ 2.54
MBD4O95243 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
MBD4O95243 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
MBD4O95243 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
MBD4O95243 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
MBD4O95243 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
MBD4O95243 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
MBD4O95243 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
MBD4O95243 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
MBD4O95243 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
MBD4O95243 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
MBD4O95243 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
MBD4O95243 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
MBD4O95243 AL139393.2-201ENST00000608721 2025 ntBASIC30.85■■■□□ 2.53
MBD4O95243 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.84■■■□□ 2.53
MBD4O95243 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
MBD4O95243 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
MBD4O95243 MIR639-201ENST00000384974 98 ntBASIC30.83■■■□□ 2.53
MBD4O95243 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.83■■■□□ 2.53
MBD4O95243 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
MBD4O95243 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.82■■■□□ 2.52
MBD4O95243 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
MBD4O95243 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
MBD4O95243 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.81■■■□□ 2.52
MBD4O95243 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
MBD4O95243 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.8■■■□□ 2.52
MBD4O95243 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
MBD4O95243 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
MBD4O95243 AP004833.2-201ENST00000532228 1454 ntBASIC30.79■■■□□ 2.52
MBD4O95243 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.79■■■□□ 2.52
MBD4O95243 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
MBD4O95243 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
MBD4O95243 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
MBD4O95243 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.77■■■□□ 2.52
MBD4O95243 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.77■■■□□ 2.52
MBD4O95243 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.76■■■□□ 2.51
MBD4O95243 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
MBD4O95243 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
MBD4O95243 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.74■■■□□ 2.51
MBD4O95243 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
MBD4O95243 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
MBD4O95243 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
MBD4O95243 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.73■■■□□ 2.51
MBD4O95243 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
MBD4O95243 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
MBD4O95243 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.72■■■□□ 2.51
MBD4O95243 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.72■■■□□ 2.51
MBD4O95243 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
MBD4O95243 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.71■■■□□ 2.51
MBD4O95243 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
MBD4O95243 MIR4449-201ENST00000578365 66 ntBASIC30.7■■■□□ 2.51
MBD4O95243 AC100797.4-201ENST00000631653 1827 ntBASIC30.7■■■□□ 2.5
MBD4O95243 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.7■■■□□ 2.5
MBD4O95243 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
MBD4O95243 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.69■■■□□ 2.5
MBD4O95243 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.69■■■□□ 2.5
MBD4O95243 AC110285.7-201ENST00000624417 1536 ntBASIC30.69■■■□□ 2.5
MBD4O95243 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
MBD4O95243 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.69■■■□□ 2.5
MBD4O95243 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
MBD4O95243 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
MBD4O95243 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
MBD4O95243 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
MBD4O95243 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
MBD4O95243 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.66■■■□□ 2.5
MBD4O95243 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.65■■■□□ 2.5
MBD4O95243 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.65■■■□□ 2.5
MBD4O95243 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
MBD4O95243 ABCB10P3-201ENST00000561950 2166 ntBASIC30.65■■■□□ 2.5
MBD4O95243 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.64■■■□□ 2.5
MBD4O95243 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
MBD4O95243 AC139426.1-201ENST00000568218 2529 ntBASIC30.63■■■□□ 2.49
MBD4O95243 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
MBD4O95243 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.62■■■□□ 2.49
MBD4O95243 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
MBD4O95243 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
MBD4O95243 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
MBD4O95243 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.61■■■□□ 2.49
MBD4O95243 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
MBD4O95243 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
MBD4O95243 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
MBD4O95243 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
MBD4O95243 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.6■■■□□ 2.49
MBD4O95243 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
MBD4O95243 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
MBD4O95243 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.59■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms