Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MED15-229ENST00000489651 3563 ntTSL 1 (best)12.1□□□□□ -0.471e-8■■□□□ 13.1
DDX55Q8NHQ9 MED15-230ENST00000492381 3619 ntTSL 211.16□□□□□ -0.621e-8■■□□□ 13.1
DDX55Q8NHQ9 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.471e-6■■□□□ 13.1
DDX55Q8NHQ9 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.27■□□□□ 0.671e-6■■□□□ 13.1
DDX55Q8NHQ9 SH3BP1-203ENST00000451997 3123 ntTSL 213.03□□□□□ -0.321e-6■■□□□ 13.1
DDX55Q8NHQ9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.274e-24■■□□□ 13.1
DDX55Q8NHQ9 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC16.03■□□□□ 0.169e-7■■□□□ 13.1
DDX55Q8NHQ9 AL645922.1-202ENST00000477310 3377 ntTSL 5 BASIC11.4□□□□□ -0.582e-11■■□□□ 13.1
DDX55Q8NHQ9 AL645922.1-201ENST00000456570 3874 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.732e-11■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-211ENST00000532025 653 ntTSL 320.77■□□□□ 0.922e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-202ENST00000382671 1489 ntTSL 1 (best)19.19■□□□□ 0.662e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.52e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-204ENST00000525665 1632 ntTSL 517.97■□□□□ 0.472e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.49■□□□□ 0.392e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.32■□□□□ 0.362e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-201ENST00000352303 1427 ntTSL 5 BASIC15.06■□□□□ 02e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-207ENST00000527982 2200 nt13.32□□□□□ -0.282e-13■■□□□ 13.1
DDX55Q8NHQ9 PSMD13-205ENST00000526783 892 ntTSL 513.31□□□□□ -0.282e-13■■□□□ 13.1
DDX55Q8NHQ9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.06■■□□□ 1.129e-23■■□□□ 13.1
DDX55Q8NHQ9 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.722e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.43■□□□□ 0.72e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-208ENST00000409617 700 ntTSL 217.77■□□□□ 0.442e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.54■□□□□ 0.42e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.372e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.83■□□□□ 0.282e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-212ENST00000445816 2099 ntTSL 316.23■□□□□ 0.192e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-204ENST00000402131 586 ntTSL 2 BASIC15.9■□□□□ 0.142e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-205ENST00000403425 690 ntTSL 2 BASIC15.73■□□□□ 0.112e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-210ENST00000409960 1032 ntTSL 1 (best) BASIC14.78□□□□□ -0.042e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-216ENST00000486144 1030 ntTSL 214.78□□□□□ -0.042e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-213ENST00000448830 2792 ntTSL 214.25□□□□□ -0.132e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-202ENST00000339624 506 ntTSL 2 BASIC13.8□□□□□ -0.22e-22■■□□□ 13.1
DDX55Q8NHQ9 SERF2-215ENST00000475927 692 ntTSL 215.73■□□□□ 0.112e-54■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-212ENST00000566706 940 ntTSL 527.25■■□□□ 1.951e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-205ENST00000563145 859 ntTSL 224.33■■□□□ 1.491e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-209ENST00000563633 1117 ntTSL 524.03■■□□□ 1.441e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.31e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-215ENST00000568263 1482 ntTSL 222.12■■□□□ 1.131e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-210ENST00000565570 1844 ntTSL 521.29■■□□□ 11e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-207ENST00000563453 555 ntTSL 221.19■□□□□ 0.981e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21■□□□□ 0.951e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-206ENST00000563444 529 ntTSL 218.05■□□□□ 0.481e-11■■□□□ 13.1
DDX55Q8NHQ9 HMBOX1-209ENST00000522468 817 ntTSL 317.62■□□□□ 0.411e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-204ENST00000561487 701 ntTSL 216.86■□□□□ 0.291e-11■■□□□ 13.1
DDX55Q8NHQ9 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC14.14□□□□□ -0.151e-11■■□□□ 13.1
DDX55Q8NHQ9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.32■□□□□ 0.848e-7■■□□□ 13.1
DDX55Q8NHQ9 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.33□□□□□ -1.568e-7■■□□□ 13.1
DDX55Q8NHQ9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.436e-7■■□□□ 13.1
DDX55Q8NHQ9 ARHGAP4-217ENST00000466928 840 ntTSL 223.27■■□□□ 1.322e-8■■□□□ 13.1
DDX55Q8NHQ9 FUS-203ENST00000474990 827 ntTSL 328.15■■■□□ 2.12e-18■■□□□ 13.1
DDX55Q8NHQ9 PACSIN3-209ENST00000532457 1845 ntTSL 525.42■■□□□ 1.666e-7■■□□□ 13.1
DDX55Q8NHQ9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.436e-7■■□□□ 13.1
DDX55Q8NHQ9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.246e-7■■□□□ 13.1
DDX55Q8NHQ9 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.58■□□□□ 0.561e-21■■□□□ 13
DDX55Q8NHQ9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.039e-7■■□□□ 13
DDX55Q8NHQ9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.519e-7■■□□□ 13
DDX55Q8NHQ9 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.319e-7■■□□□ 13
DDX55Q8NHQ9 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.229e-7■■□□□ 13
DDX55Q8NHQ9 PPP1R35-203ENST00000476185 474 ntTSL 225.03■■□□□ 1.64e-12■■□□□ 13
DDX55Q8NHQ9 PPP1R35-202ENST00000470295 758 ntTSL 224.24■■□□□ 1.474e-12■■□□□ 13
DDX55Q8NHQ9 GANAB-216ENST00000540933 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.485e-14■■□□□ 13
DDX55Q8NHQ9 GANAB-211ENST00000532402 3718 ntTSL 1 (best)11.05□□□□□ -0.645e-14■■□□□ 13
DDX55Q8NHQ9 GANAB-201ENST00000346178 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.645e-14■■□□□ 13
DDX55Q8NHQ9 NCL-201ENST00000322723 4034 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.336e-28■■□□□ 13
DDX55Q8NHQ9 USF2-215ENST00000602164 582 ntTSL 332.59■■■□□ 2.817e-7■■□□□ 13
DDX55Q8NHQ9 ZNF428-202ENST00000595304 569 ntTSL 229.99■■■□□ 2.397e-7■■□□□ 13
DDX55Q8NHQ9 USF2-210ENST00000598058 510 ntTSL 224.4■■□□□ 1.57e-7■■□□□ 13
DDX55Q8NHQ9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC24.11■■□□□ 1.457e-7■■□□□ 13
DDX55Q8NHQ9 NUBP2-207ENST00000565603 995 ntTSL 323.67■■□□□ 1.385e-9■■□□□ 13
DDX55Q8NHQ9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.6■■□□□ 1.377e-7■■□□□ 13
DDX55Q8NHQ9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.367e-7■■□□□ 13
DDX55Q8NHQ9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC23.15■■□□□ 1.37e-7■■□□□ 13
DDX55Q8NHQ9 SIGIRR-210ENST00000527987 803 ntTSL 222.96■■□□□ 1.272e-13■■□□□ 13
DDX55Q8NHQ9 SIGIRR-216ENST00000528845 573 ntTSL 222.89■■□□□ 1.252e-13■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-203ENST00000501869 684 ntTSL 1 (best)22.74■■□□□ 1.237e-7■■□□□ 13
DDX55Q8NHQ9 SIGIRR-209ENST00000527295 1867 ntTSL 222.72■■□□□ 1.232e-13■■□□□ 13
DDX55Q8NHQ9 EIF4G1-237ENST00000485712 474 ntTSL 422.16■■□□□ 1.147e-7■■□□□ 13
DDX55Q8NHQ9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.95■■□□□ 1.12e-13■■□□□ 13
DDX55Q8NHQ9 MED16-201ENST00000269814 1199 ntTSL 5 BASIC21.47■■□□□ 1.037e-7■■□□□ 13
DDX55Q8NHQ9 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC21.4■■□□□ 1.025e-9■■□□□ 13
DDX55Q8NHQ9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.31■■□□□ 17e-7■■□□□ 13
DDX55Q8NHQ9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.972e-13■■□□□ 13
DDX55Q8NHQ9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.942e-13■■□□□ 13
DDX55Q8NHQ9 MED16-214ENST00000617672 554 ntTSL 5 BASIC20.43■□□□□ 0.867e-7■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.29■□□□□ 0.847e-7■■□□□ 13
DDX55Q8NHQ9 SIGIRR-206ENST00000526395 608 ntTSL 220.26■□□□□ 0.832e-13■■□□□ 13
DDX55Q8NHQ9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.772e-13■■□□□ 13
DDX55Q8NHQ9 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.5■□□□□ 0.715e-9■■□□□ 13
DDX55Q8NHQ9 EIF4G1-208ENST00000413967 2808 ntTSL 219.26■□□□□ 0.677e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-226ENST00000450424 2658 ntTSL 519.14■□□□□ 0.657e-7■■□□□ 13
DDX55Q8NHQ9 MED16-215ENST00000621073 492 ntTSL 518.91■□□□□ 0.627e-7■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-206ENST00000504922 585 ntTSL 218.66■□□□□ 0.587e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-210ENST00000421110 2755 ntTSL 518.13■□□□□ 0.497e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-202ENST00000373520 1630 ntTSL 218.12■□□□□ 0.497e-7■■□□□ 13
DDX55Q8NHQ9 TMEM161B-AS1-210ENST00000510087 590 ntTSL 318■□□□□ 0.477e-7■■□□□ 13
DDX55Q8NHQ9 RPS6KA4-203ENST00000528355 2532 ntTSL 217.93■□□□□ 0.467e-7■■□□□ 13
DDX55Q8NHQ9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.36■□□□□ 0.377e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-211ENST00000527513 576 ntTSL 517.34■□□□□ 0.377e-7■■□□□ 13
DDX55Q8NHQ9 BSDC1-210ENST00000527163 567 ntTSL 517.34■□□□□ 0.377e-7■■□□□ 13
DDX55Q8NHQ9 EIF4G1-227ENST00000455679 542 ntTSL 417.13■□□□□ 0.337e-7■■□□□ 13
Retrieved 100 of 15,504 protein–RNA pairs in 156.5 ms