RNA–Protein interactions for RNA: ENST00000522468.1

HMBOX1-209, Transcript of homeobox containing 1, humanhuman

TSL 3

Gene HMBOX1, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-209ENST00000522468 NISCHQ9Y2I1 1504 aa35.5■■■■□ 3.27
HMBOX1-209ENST00000522468 CCDC180Q9P1Z9 1646 aa31.88■■■□□ 2.69
HMBOX1-209ENST00000522468 ABCC9O60706 1549 aa31.7■■■□□ 2.67
HMBOX1-209ENST00000522468 RB1CC1Q8TDY2 1594 aa30.24■■■□□ 2.43
HMBOX1-209ENST00000522468 NACADO15069 1562 aa30.08■■■□□ 2.41
HMBOX1-209ENST00000522468 MYO15BQ96JP2 1530 aa29.74■■■□□ 2.35
HMBOX1-209ENST00000522468 DNAJC5BQ9UF47 199 aa29.73■■■□□ 2.35
HMBOX1-209ENST00000522468 DCAF8L2P0C7V8 631 aa29.72■■■□□ 2.35
HMBOX1-209ENST00000522468 UNC13AQ9UPW8 1703 aa29.66■■■□□ 2.34
HMBOX1-209ENST00000522468 PABPN1Q86U42 306 aaKnown RBP eCLIP29.48■■■□□ 2.31
HMBOX1-209ENST00000522468 ZCCHC6Q5VYS8 1495 aaKnown RBP29.46■■■□□ 2.31
HMBOX1-209ENST00000522468 BICRAQ9NZM4 1560 aa29.45■■■□□ 2.31
HMBOX1-209ENST00000522468 DCAF1Q9Y4B6 1507 aa29.38■■■□□ 2.29
HMBOX1-209ENST00000522468 SHROOM4Q9ULL8 1493 aa29.03■■■□□ 2.24
HMBOX1-209ENST00000522468 SCRIBQ14160 1630 aa28.97■■■□□ 2.23
HMBOX1-209ENST00000522468 CC2D2AQ9P2K1 1620 aa28.7■■■□□ 2.19
HMBOX1-209ENST00000522468 EIF4G1Q04637 1599 aaKnown RBP28.67■■■□□ 2.18
HMBOX1-209ENST00000522468 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
HMBOX1-209ENST00000522468 NCAPD3P42695 1498 aa27.77■■■□□ 2.04
HMBOX1-209ENST00000522468 SMARCA4P51532 1647 aa27.69■■■□□ 2.02
HMBOX1-209ENST00000522468 ATAD2BQ9ULI0 1458 aa27.69■■■□□ 2.02
HMBOX1-209ENST00000522468 SMARCA2P51531 1590 aa27.6■■■□□ 2.01
HMBOX1-209ENST00000522468 HMGXB3Q12766 1538 aa27.59■■■□□ 2.01
HMBOX1-209ENST00000522468 BAZ1AQ9NRL2 1556 aaPredicted RBP27.53■■■□□ 2
HMBOX1-209ENST00000522468 PEG3Q9GZU2 1588 aa27.48■■□□□ 1.99
HMBOX1-209ENST00000522468 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
HMBOX1-209ENST00000522468 MROH2BQ7Z745 1585 aa27.35■■□□□ 1.97
HMBOX1-209ENST00000522468 CUX2O14529 1486 aa27.33■■□□□ 1.97
HMBOX1-209ENST00000522468 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
HMBOX1-209ENST00000522468 NESP48681 1621 aa27.29■■□□□ 1.96
HMBOX1-209ENST00000522468 DNAJC5Q9H3Z4 198 aa27.22■■□□□ 1.95
HMBOX1-209ENST00000522468 LAMC3Q9Y6N6 1575 aa27.13■■□□□ 1.93
HMBOX1-209ENST00000522468 THOC2Q8NI27 1593 aaKnown RBP27.06■■□□□ 1.92
HMBOX1-209ENST00000522468 WIZO95785 1651 aa27.03■■□□□ 1.92
HMBOX1-209ENST00000522468 KIF21AQ7Z4S6 1674 aa26.98■■□□□ 1.91
HMBOX1-209ENST00000522468 PDS5BQ9NTI5 1447 aa26.9■■□□□ 1.9
HMBOX1-209ENST00000522468 CADPSQ9ULU8 1353 aa26.89■■□□□ 1.9
HMBOX1-209ENST00000522468 RSF1Q96T23 1441 aaPredicted RBP26.8■■□□□ 1.88
HMBOX1-209ENST00000522468 MRC2Q9UBG0 1479 aa26.7■■□□□ 1.87
HMBOX1-209ENST00000522468 WDR62O43379 1518 aa26.69■■□□□ 1.86
HMBOX1-209ENST00000522468 TOP2AP11388 1531 aaKnown RBP26.69■■□□□ 1.86
HMBOX1-209ENST00000522468 CFTRP13569 1480 aa26.63■■□□□ 1.85
HMBOX1-209ENST00000522468 CEP164Q9UPV0 1460 aa26.59■■□□□ 1.85
HMBOX1-209ENST00000522468 FANCD2Q9BXW9 1451 aa26.58■■□□□ 1.85
HMBOX1-209ENST00000522468 PRDM2Q13029 1718 aa26.43■■□□□ 1.82
HMBOX1-209ENST00000522468 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.82
HMBOX1-209ENST00000522468 CCDC88BA6NC98 1476 aa26.37■■□□□ 1.81
HMBOX1-209ENST00000522468 TOPBP1Q92547 1522 aa26.11■■□□□ 1.77
HMBOX1-209ENST00000522468 IFT140Q96RY7 1462 aa26.07■■□□□ 1.76
HMBOX1-209ENST00000522468 ZNF608Q9ULD9 1512 aaPredicted RBP26.04■■□□□ 1.76
HMBOX1-209ENST00000522468 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
HMBOX1-209ENST00000522468 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
HMBOX1-209ENST00000522468 OSCARQ8IYS5 282 aa26.01■■□□□ 1.75
HMBOX1-209ENST00000522468 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
HMBOX1-209ENST00000522468 EIF4G3O43432 1585 aaKnown RBP25.93■■□□□ 1.74
HMBOX1-209ENST00000522468 TARBP1Q13395 1621 aaKnown RBP25.92■■□□□ 1.74
HMBOX1-209ENST00000522468 POLA1P09884 1462 aaPredicted RBP25.85■■□□□ 1.73
HMBOX1-209ENST00000522468 AQRO60306 1485 aaKnown RBP eCLIP25.79■■□□□ 1.721e-6■□□□□ 11.3
HMBOX1-209ENST00000522468 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
HMBOX1-209ENST00000522468 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
HMBOX1-209ENST00000522468 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
HMBOX1-209ENST00000522468 CHD1O14646 1710 aa25.73■■□□□ 1.71
HMBOX1-209ENST00000522468 RAD54L2Q9Y4B4 1467 aa25.72■■□□□ 1.71
HMBOX1-209ENST00000522468 CUX1P39880 1505 aa25.69■■□□□ 1.7
HMBOX1-209ENST00000522468 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
HMBOX1-209ENST00000522468 FGD5Q6ZNL6 1462 aa25.68■■□□□ 1.7
HMBOX1-209ENST00000522468 SOGA1O94964 1423 aa25.68■■□□□ 1.7
HMBOX1-209ENST00000522468 WDR97A6NE52 1622 aa25.66■■□□□ 1.7
HMBOX1-209ENST00000522468 TDRD9Q8NDG6 1382 aaKnown RBP25.61■■□□□ 1.69
HMBOX1-209ENST00000522468 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
HMBOX1-209ENST00000522468 SUPT5HO00267 1087 aaKnown RBP25.5■■□□□ 1.67
HMBOX1-209ENST00000522468 MAGI1Q96QZ7 1491 aaPredicted RBP25.48■■□□□ 1.67
HMBOX1-209ENST00000522468 FBLN2P98095 1184 aa25.48■■□□□ 1.67
HMBOX1-209ENST00000522468 GRIN2BQ13224 1484 aa25.47■■□□□ 1.67
HMBOX1-209ENST00000522468 CLASP1Q7Z460 1538 aa25.45■■□□□ 1.66
HMBOX1-209ENST00000522468 ARAP1Q96P48 1450 aa25.44■■□□□ 1.66
HMBOX1-209ENST00000522468 PBRM1Q86U86 1689 aa25.43■■□□□ 1.66
HMBOX1-209ENST00000522468 ABCA10Q8WWZ4 1543 aa25.42■■□□□ 1.66
HMBOX1-209ENST00000522468 ABCA5Q8WWZ7 1642 aa25.41■■□□□ 1.66
HMBOX1-209ENST00000522468 SYNJ2O15056 1496 aa25.4■■□□□ 1.66
HMBOX1-209ENST00000522468 CYB5RLQ6IPT4 315 aa25.39■■□□□ 1.66
HMBOX1-209ENST00000522468 GAPVD1Q14C86 1478 aa25.39■■□□□ 1.65
HMBOX1-209ENST00000522468 SYNJ1O43426 1573 aa25.37■■□□□ 1.65
HMBOX1-209ENST00000522468 CHMP7Q8WUX9 453 aaPredicted RBP25.34■■□□□ 1.65
HMBOX1-209ENST00000522468 BIVM-ERCC5R4GMW8 1640 aa25.34■■□□□ 1.65
HMBOX1-209ENST00000522468 TOP2BQ02880 1626 aa25.31■■□□□ 1.64
HMBOX1-209ENST00000522468 WRNQ14191 1432 aaPredicted RBP eCLIP25.27■■□□□ 1.64
HMBOX1-209ENST00000522468 ADAMTS12P58397 1594 aa25.18■■□□□ 1.62
HMBOX1-209ENST00000522468 GRIN2AQ12879 1464 aa25.16■■□□□ 1.62
HMBOX1-209ENST00000522468 NUP160Q12769 1436 aa25.11■■□□□ 1.61
HMBOX1-209ENST00000522468 ERICH3Q5RHP9 1530 aa25.1■■□□□ 1.61
HMBOX1-209ENST00000522468 CEP170Q5SW79 1584 aa25.1■■□□□ 1.61
HMBOX1-209ENST00000522468 FHAD1B1AJZ9 1412 aa25.07■■□□□ 1.6
HMBOX1-209ENST00000522468 ERCC6L2Q5T890 1561 aa25.05■■□□□ 1.6
HMBOX1-209ENST00000522468 SHROOM2Q13796 1616 aa25.03■■□□□ 1.6
HMBOX1-209ENST00000522468 TRHP20396 242 aaPredicted RBP25.02■■□□□ 1.6
HMBOX1-209ENST00000522468 RUSC2Q8N2Y8 1516 aa24.85■■□□□ 1.57
HMBOX1-209ENST00000522468 PRG4Q92954 1404 aaPredicted RBP24.78■■□□□ 1.56
HMBOX1-209ENST00000522468 IGF1RP08069 1367 aa24.77■■□□□ 1.56
HMBOX1-209ENST00000522468 JPH4Q96JJ6 628 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms