RNA–Protein interactions for RNA: ENST00000518385.5

SDC2-202, Transcript of syndecan 2, humanhuman

TSL 5 BASIC

Gene SDC2, Length 1,583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-202ENST00000518385 NISCHQ9Y2I1 1504 aa40.6■■■■■ 4.09
SDC2-202ENST00000518385 CCDC180Q9P1Z9 1646 aa35.51■■■■□ 3.28
SDC2-202ENST00000518385 ZCCHC6Q5VYS8 1495 aaKnown RBP34.02■■■■□ 3.04
SDC2-202ENST00000518385 ABCC9O60706 1549 aa33.79■■■■□ 3
SDC2-202ENST00000518385 DCAF1Q9Y4B6 1507 aa33.6■■■□□ 2.97
SDC2-202ENST00000518385 DCAF8L2P0C7V8 631 aa33.58■■■□□ 2.97
SDC2-202ENST00000518385 MYO15BQ96JP2 1530 aa33.33■■■□□ 2.93
SDC2-202ENST00000518385 NACADO15069 1562 aa33.17■■■□□ 2.9
SDC2-202ENST00000518385 RB1CC1Q8TDY2 1594 aa32.92■■■□□ 2.86
SDC2-202ENST00000518385 SHROOM4Q9ULL8 1493 aa32.83■■■□□ 2.85
SDC2-202ENST00000518385 SCRIBQ14160 1630 aa32.56■■■□□ 2.8
SDC2-202ENST00000518385 UNC13AQ9UPW8 1703 aa32.21■■■□□ 2.75
SDC2-202ENST00000518385 BICRAQ9NZM4 1560 aa31.93■■■□□ 2.7
SDC2-202ENST00000518385 PABPN1Q86U42 306 aaKnown RBP eCLIP31.83■■■□□ 2.69
SDC2-202ENST00000518385 SUPT5HO00267 1087 aaKnown RBP31.67■■■□□ 2.66
SDC2-202ENST00000518385 CECR2Q9BXF3 1484 aa31.55■■■□□ 2.64
SDC2-202ENST00000518385 RSF1Q96T23 1441 aaPredicted RBP31.38■■■□□ 2.61
SDC2-202ENST00000518385 BAZ1AQ9NRL2 1556 aaPredicted RBP31.36■■■□□ 2.61
SDC2-202ENST00000518385 MROH2BQ7Z745 1585 aa31.32■■■□□ 2.61
SDC2-202ENST00000518385 SMARCA4P51532 1647 aa31.23■■■□□ 2.59
SDC2-202ENST00000518385 WIZO95785 1651 aa31.04■■■□□ 2.56
SDC2-202ENST00000518385 EIF4G1Q04637 1599 aaKnown RBP30.98■■■□□ 2.55
SDC2-202ENST00000518385 PEG3Q9GZU2 1588 aa30.91■■■□□ 2.54
SDC2-202ENST00000518385 ATAD2BQ9ULI0 1458 aa30.82■■■□□ 2.52
SDC2-202ENST00000518385 SMARCA2P51531 1590 aa30.79■■■□□ 2.52
SDC2-202ENST00000518385 TOP2AP11388 1531 aaKnown RBP30.73■■■□□ 2.51
SDC2-202ENST00000518385 NCAPD3P42695 1498 aa30.64■■■□□ 2.49
SDC2-202ENST00000518385 CHIC1Q5VXU3 224 aa30.61■■■□□ 2.49
SDC2-202ENST00000518385 BAZ1BQ9UIG0 1483 aaKnown RBP30.6■■■□□ 2.49
SDC2-202ENST00000518385 CC2D2AQ9P2K1 1620 aa30.59■■■□□ 2.49
SDC2-202ENST00000518385 HMGXB3Q12766 1538 aa30.53■■■□□ 2.48
SDC2-202ENST00000518385 CCDC88BA6NC98 1476 aa30.43■■■□□ 2.46
SDC2-202ENST00000518385 DNAJC5BQ9UF47 199 aa30.11■■■□□ 2.41
SDC2-202ENST00000518385 CFTRP13569 1480 aa29.86■■■□□ 2.37
SDC2-202ENST00000518385 TRIM41Q8WV44 630 aa29.86■■■□□ 2.37
SDC2-202ENST00000518385 CADPSQ9ULU8 1353 aa29.82■■■□□ 2.36
SDC2-202ENST00000518385 HRCP23327 699 aa29.77■■■□□ 2.36
SDC2-202ENST00000518385 ABCC8Q09428 1581 aa29.64■■■□□ 2.34
SDC2-202ENST00000518385 PRDM2Q13029 1718 aa29.64■■■□□ 2.33
SDC2-202ENST00000518385 LAMC3Q9Y6N6 1575 aa29.6■■■□□ 2.33
SDC2-202ENST00000518385 NESP48681 1621 aa29.59■■■□□ 2.33
SDC2-202ENST00000518385 WRNQ14191 1432 aaPredicted RBP eCLIP29.54■■■□□ 2.32
SDC2-202ENST00000518385 FANCD2Q9BXW9 1451 aa29.45■■■□□ 2.31
SDC2-202ENST00000518385 PDS5BQ9NTI5 1447 aa29.4■■■□□ 2.3
SDC2-202ENST00000518385 SYNJ1O43426 1573 aa29.39■■■□□ 2.3
SDC2-202ENST00000518385 LOC105371045A0A1W2PR82 267 aa29.35■■■□□ 2.29
SDC2-202ENST00000518385 TOP2BQ02880 1626 aa29.33■■■□□ 2.29
SDC2-202ENST00000518385 CUX1P39880 1505 aa29.31■■■□□ 2.28
SDC2-202ENST00000518385 BIVM-ERCC5R4GMW8 1640 aa29.29■■■□□ 2.28
SDC2-202ENST00000518385 CEP164Q9UPV0 1460 aa29.28■■■□□ 2.28
SDC2-202ENST00000518385 KIF21AQ7Z4S6 1674 aa29.21■■■□□ 2.27
SDC2-202ENST00000518385 EEA1Q15075 1411 aa29.19■■■□□ 2.26
SDC2-202ENST00000518385 FAM9AQ8IZU1 332 aaPredicted RBP29.18■■■□□ 2.26
SDC2-202ENST00000518385 DNMBPQ6XZF7 1577 aa29.14■■■□□ 2.25
SDC2-202ENST00000518385 PCGF6Q9BYE7 350 aa29.13■■■□□ 2.25
SDC2-202ENST00000518385 TOPBP1Q92547 1522 aa29.11■■■□□ 2.25
SDC2-202ENST00000518385 URB2Q14146 1524 aaKnown RBP29.1■■■□□ 2.25
SDC2-202ENST00000518385 SOGA1O94964 1423 aa29.07■■■□□ 2.24
SDC2-202ENST00000518385 FGD5Q6ZNL6 1462 aa29.03■■■□□ 2.24
SDC2-202ENST00000518385 MRC2Q9UBG0 1479 aa29.01■■■□□ 2.23
SDC2-202ENST00000518385 ERCC6Q03468 1493 aa29.01■■■□□ 2.23
SDC2-202ENST00000518385 RUSC2Q8N2Y8 1516 aa28.97■■■□□ 2.23
SDC2-202ENST00000518385 POLA1P09884 1462 aaPredicted RBP28.94■■■□□ 2.22
SDC2-202ENST00000518385 TRIM26Q12899 539 aaPredicted RBP28.91■■■□□ 2.22
SDC2-202ENST00000518385 CSRNP3Q8WYN3 585 aa28.9■■■□□ 2.22
SDC2-202ENST00000518385 WDR62O43379 1518 aa28.87■■■□□ 2.21
SDC2-202ENST00000518385 RAD54L2Q9Y4B4 1467 aa28.84■■■□□ 2.21
SDC2-202ENST00000518385 KIF27Q86VH2 1401 aa28.83■■■□□ 2.21
SDC2-202ENST00000518385 THOC2Q8NI27 1593 aaKnown RBP28.81■■■□□ 2.2
SDC2-202ENST00000518385 ABCA10Q8WWZ4 1543 aa28.8■■■□□ 2.2
SDC2-202ENST00000518385 ZEB1P37275 1124 aaPredicted RBP28.79■■■□□ 2.2
SDC2-202ENST00000518385 CUX2O14529 1486 aa28.79■■■□□ 2.2
SDC2-202ENST00000518385 TNIKQ9UKE5 1360 aa28.72■■■□□ 2.19
SDC2-202ENST00000518385 GOLGA3Q08378 1498 aa28.7■■■□□ 2.19
SDC2-202ENST00000518385 KIF21BO75037 1637 aa28.7■■■□□ 2.18
SDC2-202ENST00000518385 TARBP1Q13395 1621 aaKnown RBP28.69■■■□□ 2.18
SDC2-202ENST00000518385 WDR97A6NE52 1622 aa28.68■■■□□ 2.18
SDC2-202ENST00000518385 IGF1RP08069 1367 aa28.64■■■□□ 2.17
SDC2-202ENST00000518385 IFT140Q96RY7 1462 aa28.63■■■□□ 2.17
SDC2-202ENST00000518385 EHMT2Q96KQ7 1210 aa28.63■■■□□ 2.17
SDC2-202ENST00000518385 TDRD9Q8NDG6 1382 aaKnown RBP28.59■■■□□ 2.17
SDC2-202ENST00000518385 PRXQ9BXM0 1461 aa28.57■■■□□ 2.16
SDC2-202ENST00000518385 ABCA5Q8WWZ7 1642 aa28.55■■■□□ 2.16
SDC2-202ENST00000518385 GAPVD1Q14C86 1478 aa28.53■■■□□ 2.16
SDC2-202ENST00000518385 UBTFP17480 764 aaKnown RBP28.51■■■□□ 2.15
SDC2-202ENST00000518385 CEP162Q5TB80 1403 aa28.51■■■□□ 2.15
SDC2-202ENST00000518385 PPARGC1BQ86YN6 1023 aaKnown RBP28.5■■■□□ 2.15
SDC2-202ENST00000518385 RAPGEF2Q9Y4G8 1499 aa28.48■■■□□ 2.15
SDC2-202ENST00000518385 ERICH3Q5RHP9 1530 aa28.47■■■□□ 2.15
SDC2-202ENST00000518385 CARMIL1Q5VZK9 1371 aa28.46■■■□□ 2.15
SDC2-202ENST00000518385 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.152e-6■■■■□ 24.3
SDC2-202ENST00000518385 ZNF608Q9ULD9 1512 aaPredicted RBP28.45■■■□□ 2.14
SDC2-202ENST00000518385 CUL7Q14999 1698 aa28.38■■■□□ 2.13
SDC2-202ENST00000518385 GRIN2BQ13224 1484 aa28.36■■■□□ 2.13
SDC2-202ENST00000518385 PBRM1Q86U86 1689 aa28.35■■■□□ 2.13
SDC2-202ENST00000518385 EIF4G3O43432 1585 aaKnown RBP28.32■■■□□ 2.12
SDC2-202ENST00000518385 FHAD1B1AJZ9 1412 aa28.23■■■□□ 2.11
SDC2-202ENST00000518385 CLIP1P30622 1438 aa28.23■■■□□ 2.11
SDC2-202ENST00000518385 PELP1Q8IZL8 1130 aaKnown RBP28.2■■■□□ 2.1
SDC2-202ENST00000518385 ADAMTS12P58397 1594 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms