Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NKX6-3A6NJ46 AC010864.1-201ENST00000609407 1511 ntBASIC22■■□□□ 1.11
NKX6-3A6NJ46 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.99■■□□□ 1.11
NKX6-3A6NJ46 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NKX6-3A6NJ46 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
NKX6-3A6NJ46 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
NKX6-3A6NJ46 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX6-3A6NJ46 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NKX6-3A6NJ46 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.97■■□□□ 1.11
NKX6-3A6NJ46 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NKX6-3A6NJ46 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.97■■□□□ 1.11
NKX6-3A6NJ46 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NKX6-3A6NJ46 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.96■■□□□ 1.11
NKX6-3A6NJ46 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.95■■□□□ 1.1
NKX6-3A6NJ46 AC044849.2-201ENST00000606596 710 ntBASIC21.95■■□□□ 1.1
NKX6-3A6NJ46 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
NKX6-3A6NJ46 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.94■■□□□ 1.1
NKX6-3A6NJ46 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NKX6-3A6NJ46 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NKX6-3A6NJ46 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NKX6-3A6NJ46 ST7-AS1-201ENST00000456775 1889 ntBASIC21.93■■□□□ 1.1
NKX6-3A6NJ46 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
NKX6-3A6NJ46 AC087741.3-201ENST00000624270 1347 ntBASIC21.93■■□□□ 1.1
NKX6-3A6NJ46 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 AC108673.1-201ENST00000510422 1159 ntBASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.92■■□□□ 1.1
NKX6-3A6NJ46 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
NKX6-3A6NJ46 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
NKX6-3A6NJ46 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
NKX6-3A6NJ46 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
NKX6-3A6NJ46 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NKX6-3A6NJ46 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NKX6-3A6NJ46 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
NKX6-3A6NJ46 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
NKX6-3A6NJ46 RPS2P35-201ENST00000443417 897 ntBASIC21.89■■□□□ 1.09
NKX6-3A6NJ46 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX6-3A6NJ46 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX6-3A6NJ46 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
NKX6-3A6NJ46 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NKX6-3A6NJ46 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
NKX6-3A6NJ46 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.87■■□□□ 1.09
NKX6-3A6NJ46 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NKX6-3A6NJ46 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.86■■□□□ 1.09
NKX6-3A6NJ46 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
NKX6-3A6NJ46 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
NKX6-3A6NJ46 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX6-3A6NJ46 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NKX6-3A6NJ46 ABCB10P1-201ENST00000614297 2181 ntBASIC21.84■■□□□ 1.09
NKX6-3A6NJ46 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NKX6-3A6NJ46 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
NKX6-3A6NJ46 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX6-3A6NJ46 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
NKX6-3A6NJ46 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX6-3A6NJ46 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.82■■□□□ 1.08
NKX6-3A6NJ46 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX6-3A6NJ46 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX6-3A6NJ46 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
NKX6-3A6NJ46 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.81■■□□□ 1.08
NKX6-3A6NJ46 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.8■■□□□ 1.08
NKX6-3A6NJ46 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NKX6-3A6NJ46 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.78■■□□□ 1.08
NKX6-3A6NJ46 MIR6090-201ENST00000622481 60 ntBASIC21.78■■□□□ 1.08
NKX6-3A6NJ46 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
NKX6-3A6NJ46 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NKX6-3A6NJ46 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NKX6-3A6NJ46 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.77■■□□□ 1.08
NKX6-3A6NJ46 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NKX6-3A6NJ46 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NKX6-3A6NJ46 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NKX6-3A6NJ46 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX6-3A6NJ46 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX6-3A6NJ46 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX6-3A6NJ46 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.75■■□□□ 1.07
NKX6-3A6NJ46 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NKX6-3A6NJ46 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NKX6-3A6NJ46 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.74■■□□□ 1.07
NKX6-3A6NJ46 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NKX6-3A6NJ46 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
NKX6-3A6NJ46 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
NKX6-3A6NJ46 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.72■■□□□ 1.07
NKX6-3A6NJ46 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
NKX6-3A6NJ46 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms