RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 NISCHQ9Y2I1 1504 aa64.95■■■■■ 7.99
CDKN2A-201ENST00000304494 CCDC180Q9P1Z9 1646 aa57.97■■■■■ 6.87
CDKN2A-201ENST00000304494 ABCC9O60706 1549 aa57.14■■■■■ 6.74
CDKN2A-201ENST00000304494 RB1CC1Q8TDY2 1594 aa54.81■■■■■ 6.37
CDKN2A-201ENST00000304494 NACADO15069 1562 aa54.63■■■■■ 6.34
CDKN2A-201ENST00000304494 DCAF8L2P0C7V8 631 aa54.46■■■■■ 6.31
CDKN2A-201ENST00000304494 MYO15BQ96JP2 1530 aa54.17■■■■■ 6.26
CDKN2A-201ENST00000304494 ZCCHC6Q5VYS8 1495 aaKnown RBP54■■■■■ 6.23
CDKN2A-201ENST00000304494 DCAF1Q9Y4B6 1507 aa53.75■■■■■ 6.2
CDKN2A-201ENST00000304494 UNC13AQ9UPW8 1703 aa53.47■■■■■ 6.15
CDKN2A-201ENST00000304494 PABPN1Q86U42 306 aaKnown RBP eCLIP53.3■■■■■ 6.12
CDKN2A-201ENST00000304494 BICRAQ9NZM4 1560 aa53.1■■■■■ 6.09
CDKN2A-201ENST00000304494 DNAJC5BQ9UF47 199 aa52.83■■■■■ 6.05
CDKN2A-201ENST00000304494 SCRIBQ14160 1630 aa52.82■■■■■ 6.05
CDKN2A-201ENST00000304494 SHROOM4Q9ULL8 1493 aa52.62■■■■■ 6.01
CDKN2A-201ENST00000304494 EIF4G1Q04637 1599 aaKnown RBP51.78■■■■■ 5.88
CDKN2A-201ENST00000304494 CC2D2AQ9P2K1 1620 aa51.67■■■■■ 5.86
CDKN2A-201ENST00000304494 CECR2Q9BXF3 1484 aa51.42■■■■■ 5.82
CDKN2A-201ENST00000304494 SMARCA4P51532 1647 aa50.49■■■■■ 5.67
CDKN2A-201ENST00000304494 NCAPD3P42695 1498 aa50.4■■■■■ 5.66
CDKN2A-201ENST00000304494 BAZ1AQ9NRL2 1556 aaPredicted RBP50.4■■■■■ 5.66
CDKN2A-201ENST00000304494 ATAD2BQ9ULI0 1458 aa50.34■■■■■ 5.65
CDKN2A-201ENST00000304494 SMARCA2P51531 1590 aa50.3■■■■■ 5.64
CDKN2A-201ENST00000304494 HMGXB3Q12766 1538 aa50.11■■■■■ 5.61
CDKN2A-201ENST00000304494 PEG3Q9GZU2 1588 aa50.03■■■■■ 5.6
CDKN2A-201ENST00000304494 MROH2BQ7Z745 1585 aa50.02■■■■■ 5.6
CDKN2A-201ENST00000304494 BAZ1BQ9UIG0 1483 aaKnown RBP49.93■■■■■ 5.58
CDKN2A-201ENST00000304494 WIZO95785 1651 aa49.45■■■■■ 5.51
CDKN2A-201ENST00000304494 ERCC6Q03468 1493 aa49.34■■■■■ 5.49
CDKN2A-201ENST00000304494 RSF1Q96T23 1441 aaPredicted RBP49.29■■■■■ 5.48
CDKN2A-201ENST00000304494 NESP48681 1621 aa49.28■■■■■ 5.48
CDKN2A-201ENST00000304494 LAMC3Q9Y6N6 1575 aa49.16■■■■■ 5.46
CDKN2A-201ENST00000304494 CUX2O14529 1486 aa48.99■■■■■ 5.43
CDKN2A-201ENST00000304494 TOP2AP11388 1531 aaKnown RBP48.94■■■■■ 5.43
CDKN2A-201ENST00000304494 CADPSQ9ULU8 1353 aa48.91■■■■■ 5.42
CDKN2A-201ENST00000304494 PDS5BQ9NTI5 1447 aa48.87■■■■■ 5.41
CDKN2A-201ENST00000304494 KIF21AQ7Z4S6 1674 aa48.69■■■■■ 5.38
CDKN2A-201ENST00000304494 THOC2Q8NI27 1593 aaKnown RBP48.67■■■■■ 5.38
CDKN2A-201ENST00000304494 CFTRP13569 1480 aa48.52■■■■■ 5.36
CDKN2A-201ENST00000304494 MRC2Q9UBG0 1479 aa48.37■■■■■ 5.33
CDKN2A-201ENST00000304494 CCDC88BA6NC98 1476 aa48.35■■■■■ 5.33
CDKN2A-201ENST00000304494 FANCD2Q9BXW9 1451 aa48.35■■■■■ 5.33
CDKN2A-201ENST00000304494 CEP164Q9UPV0 1460 aa48.35■■■■■ 5.33
CDKN2A-201ENST00000304494 WDR62O43379 1518 aa48.22■■■■■ 5.31
CDKN2A-201ENST00000304494 PRDM2Q13029 1718 aa48.09■■■■■ 5.29
CDKN2A-201ENST00000304494 DNAJC5Q9H3Z4 198 aa48.02■■■■■ 5.28
CDKN2A-201ENST00000304494 URB2Q14146 1524 aaKnown RBP47.86■■■■■ 5.25
CDKN2A-201ENST00000304494 SUPT5HO00267 1087 aaKnown RBP47.69■■■■■ 5.22
CDKN2A-201ENST00000304494 ABCC8Q09428 1581 aa47.54■■■■■ 5.2
CDKN2A-201ENST00000304494 TOPBP1Q92547 1522 aa47.51■■■■■ 5.2
CDKN2A-201ENST00000304494 DNMBPQ6XZF7 1577 aa47.42■■■■■ 5.18
CDKN2A-201ENST00000304494 IFT140Q96RY7 1462 aa47.36■■■■■ 5.17
CDKN2A-201ENST00000304494 ZNF608Q9ULD9 1512 aaPredicted RBP47.13■■■■■ 5.14
CDKN2A-201ENST00000304494 POLA1P09884 1462 aaPredicted RBP47.08■■■■■ 5.13
CDKN2A-201ENST00000304494 TARBP1Q13395 1621 aaKnown RBP47.01■■■■■ 5.12
CDKN2A-201ENST00000304494 CUX1P39880 1505 aa46.95■■■■■ 5.11
CDKN2A-201ENST00000304494 EIF4G3O43432 1585 aaKnown RBP46.95■■■■■ 5.11
CDKN2A-201ENST00000304494 SOGA1O94964 1423 aa46.89■■■■■ 5.1
CDKN2A-201ENST00000304494 FGD5Q6ZNL6 1462 aa46.89■■■■■ 5.1
CDKN2A-201ENST00000304494 OSCARQ8IYS5 282 aa46.88■■■■■ 5.1
CDKN2A-201ENST00000304494 RAD54L2Q9Y4B4 1467 aa46.85■■■■■ 5.09
CDKN2A-201ENST00000304494 AQRO60306 1485 aaKnown RBP eCLIP46.82■■■■■ 5.09
CDKN2A-201ENST00000304494 WDR97A6NE52 1622 aa46.68■■■■■ 5.06
CDKN2A-201ENST00000304494 TDRD9Q8NDG6 1382 aaKnown RBP46.66■■■■■ 5.06
CDKN2A-201ENST00000304494 WRNQ14191 1432 aaPredicted RBP eCLIP46.52■■■■■ 5.04
CDKN2A-201ENST00000304494 TOP2BQ02880 1626 aa46.46■■■■■ 5.03
CDKN2A-201ENST00000304494 BIVM-ERCC5R4GMW8 1640 aa46.44■■■■■ 5.03
CDKN2A-201ENST00000304494 ABCA10Q8WWZ4 1543 aa46.44■■■■■ 5.02
CDKN2A-201ENST00000304494 CHD1O14646 1710 aa46.42■■■■■ 5.02
CDKN2A-201ENST00000304494 GRIN2BQ13224 1484 aa46.41■■■■■ 5.02
CDKN2A-201ENST00000304494 SNAPC4Q5SXM2 1469 aa46.39■■■■■ 5.02
CDKN2A-201ENST00000304494 SYNJ1O43426 1573 aa46.39■■■■■ 5.02
CDKN2A-201ENST00000304494 FBLN2P98095 1184 aa46.38■■■■■ 5.02
CDKN2A-201ENST00000304494 MAGI1Q96QZ7 1491 aaPredicted RBP46.35■■■■■ 5.01
CDKN2A-201ENST00000304494 GAPVD1Q14C86 1478 aa46.34■■■■■ 5.01
CDKN2A-201ENST00000304494 ABCA5Q8WWZ7 1642 aa46.27■■■■■ 5
CDKN2A-201ENST00000304494 PBRM1Q86U86 1689 aa46.24■■■■■ 4.99
CDKN2A-201ENST00000304494 TRIM41Q8WV44 630 aa46.22■■■■■ 4.99
CDKN2A-201ENST00000304494 CHMP7Q8WUX9 453 aaPredicted RBP46.2■■■■■ 4.99
CDKN2A-201ENST00000304494 SYNJ2O15056 1496 aa46.17■■■■■ 4.98
CDKN2A-201ENST00000304494 RIMBP3CA6NJZ7 1639 aa46.14■■■■■ 4.98
CDKN2A-201ENST00000304494 RIMBP3BA6NNM3 1639 aa46.14■■■■■ 4.98
CDKN2A-201ENST00000304494 RIMBP3Q9UFD9 1639 aa46.14■■■■■ 4.98
CDKN2A-201ENST00000304494 ARHGEF11O15085 1522 aa46.09■■■■■ 4.97
CDKN2A-201ENST00000304494 CLASP1Q7Z460 1538 aa45.94■■■■■ 4.95
CDKN2A-201ENST00000304494 ERICH3Q5RHP9 1530 aa45.88■■■■■ 4.94
CDKN2A-201ENST00000304494 ADAMTS12P58397 1594 aa45.87■■■■■ 4.93
CDKN2A-201ENST00000304494 FHAD1B1AJZ9 1412 aa45.8■■■■■ 4.92
CDKN2A-201ENST00000304494 GRIN2AQ12879 1464 aa45.8■■■■■ 4.92
CDKN2A-201ENST00000304494 CYB5RLQ6IPT4 315 aa45.69■■■■■ 4.9
CDKN2A-201ENST00000304494 ARAP1Q96P48 1450 aa45.68■■■■■ 4.9
CDKN2A-201ENST00000304494 NUP160Q12769 1436 aa45.61■■■■■ 4.89
CDKN2A-201ENST00000304494 KIF27Q86VH2 1401 aa45.6■■■■■ 4.89
CDKN2A-201ENST00000304494 CEP170Q5SW79 1584 aa45.57■■■■■ 4.89
CDKN2A-201ENST00000304494 IGF1RP08069 1367 aa45.45■■■■■ 4.87
CDKN2A-201ENST00000304494 CUL7Q14999 1698 aa45.37■■■■■ 4.85
CDKN2A-201ENST00000304494 SHROOM2Q13796 1616 aa45.31■■■■■ 4.84
CDKN2A-201ENST00000304494 ERCC6L2Q5T890 1561 aa45.22■■■■■ 4.83
CDKN2A-201ENST00000304494 RUSC2Q8N2Y8 1516 aa45.21■■■■■ 4.83
CDKN2A-201ENST00000304494 CARMIL1Q5VZK9 1371 aa45.17■■■■■ 4.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms