Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MMGT1-201ENST00000305963 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.884e-13■■■□□ 14.7
DDX55Q8NHQ9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.455e-8■■■□□ 14.7
DDX55Q8NHQ9 AC106795.1-204ENST00000506672 1570 ntTSL 1 (best)20.56■□□□□ 0.888e-8■■■□□ 14.7
DDX55Q8NHQ9 AC106795.1-207ENST00000507037 1123 ntTSL 1 (best) BASIC11.18□□□□□ -0.628e-8■■■□□ 14.7
DDX55Q8NHQ9 AC106795.1-211ENST00000358442 515 ntTSL 510.89□□□□□ -0.678e-8■■■□□ 14.7
DDX55Q8NHQ9 AC106795.1-212ENST00000514635 250 ntTSL 53.28□□□□□ -1.888e-8■■■□□ 14.7
DDX55Q8NHQ9 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.58■□□□□ 0.732e-6■■■□□ 14.7
DDX55Q8NHQ9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.292e-6■■■□□ 14.7
DDX55Q8NHQ9 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.12e-6■■■□□ 14.7
DDX55Q8NHQ9 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.012e-6■■■□□ 14.7
DDX55Q8NHQ9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.63e-8■■■□□ 14.7
DDX55Q8NHQ9 C19orf81-203ENST00000490451 477 ntTSL 223.22■■□□□ 1.313e-6■■■□□ 14.7
DDX55Q8NHQ9 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.084e-7■■■□□ 14.7
DDX55Q8NHQ9 MYRF-201ENST00000265460 5745 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.24e-7■■■□□ 14.7
DDX55Q8NHQ9 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.784e-17■■■□□ 14.7
DDX55Q8NHQ9 SSU72-204ENST00000378726 2238 ntTSL 221.67■■□□□ 1.064e-17■■■□□ 14.7
DDX55Q8NHQ9 MRPS18B-206ENST00000259873 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.433e-14■■■□□ 14.7
DDX55Q8NHQ9 MRPS18B-208ENST00000472267 1610 ntTSL 1 (best)12.26□□□□□ -0.453e-14■■■□□ 14.7
DDX55Q8NHQ9 MRPS18B-207ENST00000472229 1409 ntTSL 311.35□□□□□ -0.593e-14■■■□□ 14.7
DDX55Q8NHQ9 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.221e-6■■■□□ 14.6
DDX55Q8NHQ9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.732e-9■■■□□ 14.6
DDX55Q8NHQ9 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 02e-9■■■□□ 14.6
DDX55Q8NHQ9 ARPC4-TTLL3-203ENST00000424442 903 ntTSL 514.07□□□□□ -0.162e-9■■■□□ 14.6
DDX55Q8NHQ9 ARPC4-TTLL3-202ENST00000418163 551 ntTSL 413.56□□□□□ -0.242e-9■■■□□ 14.6
DDX55Q8NHQ9 ARPC4-TTLL3-204ENST00000453882 499 ntTSL 48.88□□□□□ -0.992e-9■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.84■■□□□ 1.413e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-218ENST00000543939 1728 ntTSL 322.4■■□□□ 1.183e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.72■■□□□ 1.073e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-202ENST00000455113 1718 ntTSL 321.57■■□□□ 1.043e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.93e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.783e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.763e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-201ENST00000229251 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.073e-6■■■□□ 14.6
DDX55Q8NHQ9 COPS7A-203ENST00000534877 1707 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.223e-6■■■□□ 14.6
DDX55Q8NHQ9 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.712e-75■■■□□ 14.6
DDX55Q8NHQ9 ATP5B-204ENST00000548474 449 ntTSL 37.58□□□□□ -1.22e-75■■■□□ 14.6
DDX55Q8NHQ9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC34.25■■■■□ 3.071e-6■■■□□ 14.6
DDX55Q8NHQ9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC33.15■■■□□ 2.91e-6■■■□□ 14.6
DDX55Q8NHQ9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.681e-6■■■□□ 14.6
DDX55Q8NHQ9 ECI1-206ENST00000566379 961 ntTSL 226.98■■□□□ 1.911e-6■■■□□ 14.6
DDX55Q8NHQ9 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.138e-9■■■□□ 14.6
DDX55Q8NHQ9 VAT1-209ENST00000592388 478 ntTSL 59.54□□□□□ -0.888e-9■■■□□ 14.6
DDX55Q8NHQ9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC27.35■■□□□ 1.971e-8■■■□□ 14.6
DDX55Q8NHQ9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.862e-6■■■□□ 14.6
DDX55Q8NHQ9 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.96□□□□□ -0.012e-6■■■□□ 14.6
DDX55Q8NHQ9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.478e-16■■■□□ 14.6
DDX55Q8NHQ9 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.92■□□□□ 0.468e-16■■■□□ 14.6
DDX55Q8NHQ9 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.037e-8■■■□□ 14.6
DDX55Q8NHQ9 HACD2-203ENST00000471236 403 ntTSL 38.43□□□□□ -1.067e-8■■■□□ 14.6
DDX55Q8NHQ9 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC39.97■■■■□ 3.994e-37■■□□□ 14.5
DDX55Q8NHQ9 PPP1CA-204ENST00000526510 1677 ntTSL 1 (best)22.75■■□□□ 1.234e-37■■□□□ 14.5
DDX55Q8NHQ9 PPP1CA-208ENST00000532446 1465 ntTSL 521.09■□□□□ 0.974e-37■■□□□ 14.5
DDX55Q8NHQ9 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.01■□□□□ 0.474e-37■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.852e-15■■□□□ 14.5
DDX55Q8NHQ9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.682e-6■■□□□ 14.5
DDX55Q8NHQ9 TRAPPC6A-203ENST00000587818 433 ntTSL 224.63■■□□□ 1.535e-9■■□□□ 14.5
DDX55Q8NHQ9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.348e-8■■□□□ 14.5
DDX55Q8NHQ9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.36■■□□□ 1.332e-6■■□□□ 14.5
DDX55Q8NHQ9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.291e-6■■□□□ 14.5
DDX55Q8NHQ9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.291e-6■■□□□ 14.5
DDX55Q8NHQ9 RNF40-203ENST00000493683 5371 ntTSL 222.44■■□□□ 1.188e-8■■□□□ 14.5
DDX55Q8NHQ9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.971e-6■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-207ENST00000547698 905 ntTSL 519.7■□□□□ 0.743e-6■■□□□ 14.5
DDX55Q8NHQ9 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.79■□□□□ 0.62e-6■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.61■□□□□ 0.573e-6■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-208ENST00000547813 1024 ntTSL 517.21■□□□□ 0.353e-6■■□□□ 14.5
DDX55Q8NHQ9 RNF40-212ENST00000602784 991 ntTSL 316.65■□□□□ 0.268e-12■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-202ENST00000417750 2334 ntTSL 216.51■□□□□ 0.233e-6■■□□□ 14.5
DDX55Q8NHQ9 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.81■□□□□ 0.128e-8■■□□□ 14.5
DDX55Q8NHQ9 ITGA5-211ENST00000552564 4996 ntTSL 215.7■□□□□ 0.18e-8■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-216ENST00000550867 2800 ntTSL 1 (best)15.33■□□□□ 0.043e-6■■□□□ 14.5
DDX55Q8NHQ9 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.022e-15■■□□□ 14.5
DDX55Q8NHQ9 FXR2-204ENST00000573057 675 ntTSL 214.51□□□□□ -0.091e-6■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.13e-6■■□□□ 14.5
DDX55Q8NHQ9 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.148e-8■■□□□ 14.5
DDX55Q8NHQ9 FAM50A-207ENST00000494278 294 ntTSL 214.12□□□□□ -0.156e-8■■□□□ 14.5
DDX55Q8NHQ9 JPT2-201ENST00000248098 3718 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.282e-8■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-229ENST00000553040 768 ntTSL 513.21□□□□□ -0.293e-6■■□□□ 14.5
DDX55Q8NHQ9 LMBR1L-227ENST00000552577 2083 ntTSL 212.58□□□□□ -0.393e-6■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-201ENST00000313115 488 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.592e-15■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-204ENST00000522145 423 ntTSL 211.29□□□□□ -0.62e-15■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-205ENST00000522314 724 ntTSL 2 BASIC11.16□□□□□ -0.622e-15■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-202ENST00000520382 466 ntTSL 5 BASIC11.16□□□□□ -0.622e-15■■□□□ 14.5
DDX55Q8NHQ9 UNC119-205ENST00000484980 4189 ntTSL 2 BASIC11.06□□□□□ -0.642e-6■■□□□ 14.5
DDX55Q8NHQ9 RNF40-204ENST00000563683 4063 ntTSL 5 BASIC10.85□□□□□ -0.678e-8■■□□□ 14.5
DDX55Q8NHQ9 RNF40-202ENST00000357890 3917 ntTSL 2 BASIC10.65□□□□□ -0.718e-8■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-206ENST00000522710 591 ntAPPRIS P1 TSL 2 BASIC9.83□□□□□ -0.842e-15■■□□□ 14.5
DDX55Q8NHQ9 JPT2-205ENST00000562569 458 ntTSL 38.55□□□□□ -1.042e-8■■□□□ 14.5
DDX55Q8NHQ9 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC8.31□□□□□ -1.082e-15■■□□□ 14.5
DDX55Q8NHQ9 CD74-206ENST00000518797 1727 ntAPPRIS ALT2 TSL 216.89■□□□□ 0.294e-10■■□□□ 14.5
DDX55Q8NHQ9 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC16.32■□□□□ 0.24e-10■■□□□ 14.5
DDX55Q8NHQ9 CD74-203ENST00000377795 1138 ntTSL 1 (best) BASIC15.55■□□□□ 0.084e-10■■□□□ 14.5
DDX55Q8NHQ9 MDN1-204ENST00000487831 689 ntTSL 26.9□□□□□ -1.31e-8■■□□□ 14.5
DDX55Q8NHQ9 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.381e-8■■□□□ 14.5
DDX55Q8NHQ9 EHBP1L1-205ENST00000529099 490 ntTSL 525.15■■□□□ 1.621e-6■■□□□ 14.5
DDX55Q8NHQ9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC22.95■■□□□ 1.262e-8■■□□□ 14.5
DDX55Q8NHQ9 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.862e-8■■□□□ 14.5
DDX55Q8NHQ9 PFDN6-207ENST00000491382 989 ntTSL 219.51■□□□□ 0.718e-9■■□□□ 14.5
DDX55Q8NHQ9 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.52e-8■■□□□ 14.5
DDX55Q8NHQ9 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.58e-9■■□□□ 14.5
Retrieved 100 of 15,504 protein–RNA pairs in 104 ms