RNA–Protein interactions for RNA: ENST00000312989.11

PPP1CA-201, Transcript of protein phosphatase 1 catalytic subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene PPP1CA, Length 1,389 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1CA-201ENST00000312989 NISCHQ9Y2I1 1504 aa36.27■■■■□ 3.4
PPP1CA-201ENST00000312989 CCDC180Q9P1Z9 1646 aa32.29■■■□□ 2.76
PPP1CA-201ENST00000312989 ABCC9O60706 1549 aa31.85■■■□□ 2.69
PPP1CA-201ENST00000312989 RB1CC1Q8TDY2 1594 aa30.48■■■□□ 2.47
PPP1CA-201ENST00000312989 NACADO15069 1562 aa30.42■■■□□ 2.46
PPP1CA-201ENST00000312989 MYO15BQ96JP2 1530 aa30.25■■■□□ 2.43
PPP1CA-201ENST00000312989 ZCCHC6Q5VYS8 1495 aaKnown RBP30.2■■■□□ 2.43
PPP1CA-201ENST00000312989 DCAF8L2P0C7V8 631 aa30.17■■■□□ 2.42
PPP1CA-201ENST00000312989 DCAF1Q9Y4B6 1507 aa30.02■■■□□ 2.4
PPP1CA-201ENST00000312989 UNC13AQ9UPW8 1703 aa29.8■■■□□ 2.36
PPP1CA-201ENST00000312989 BICRAQ9NZM4 1560 aa29.72■■■□□ 2.35
PPP1CA-201ENST00000312989 PABPN1Q86U42 306 aaKnown RBP eCLIP29.71■■■□□ 2.35
PPP1CA-201ENST00000312989 DNAJC5BQ9UF47 199 aa29.57■■■□□ 2.32
PPP1CA-201ENST00000312989 SCRIBQ14160 1630 aa29.44■■■□□ 2.3
PPP1CA-201ENST00000312989 SHROOM4Q9ULL8 1493 aa29.3■■■□□ 2.28
PPP1CA-201ENST00000312989 EIF4G1Q04637 1599 aaKnown RBP28.89■■■□□ 2.21
PPP1CA-201ENST00000312989 CC2D2AQ9P2K1 1620 aa28.8■■■□□ 2.2
PPP1CA-201ENST00000312989 CECR2Q9BXF3 1484 aa28.64■■■□□ 2.18
PPP1CA-201ENST00000312989 SMARCA4P51532 1647 aa28.17■■■□□ 2.1
PPP1CA-201ENST00000312989 NCAPD3P42695 1498 aa28.15■■■□□ 2.1
PPP1CA-201ENST00000312989 ATAD2BQ9ULI0 1458 aa28.12■■■□□ 2.09
PPP1CA-201ENST00000312989 BAZ1AQ9NRL2 1556 aaPredicted RBP28.07■■■□□ 2.08
PPP1CA-201ENST00000312989 SMARCA2P51531 1590 aa27.98■■■□□ 2.07
PPP1CA-201ENST00000312989 MROH2BQ7Z745 1585 aa27.98■■■□□ 2.07
PPP1CA-201ENST00000312989 PEG3Q9GZU2 1588 aa27.96■■■□□ 2.07
PPP1CA-201ENST00000312989 HMGXB3Q12766 1538 aa27.96■■■□□ 2.07
PPP1CA-201ENST00000312989 BAZ1BQ9UIG0 1483 aaKnown RBP27.8■■■□□ 2.04
PPP1CA-201ENST00000312989 WIZO95785 1651 aa27.59■■■□□ 2.01
PPP1CA-201ENST00000312989 RSF1Q96T23 1441 aaPredicted RBP27.57■■■□□ 2
PPP1CA-201ENST00000312989 NESP48681 1621 aa27.54■■■□□ 2
PPP1CA-201ENST00000312989 ERCC6Q03468 1493 aa27.36■■□□□ 1.97
PPP1CA-201ENST00000312989 LAMC3Q9Y6N6 1575 aa27.36■■□□□ 1.97
PPP1CA-201ENST00000312989 TOP2AP11388 1531 aaKnown RBP27.31■■□□□ 1.96
PPP1CA-201ENST00000312989 CADPSQ9ULU8 1353 aa27.27■■□□□ 1.96
PPP1CA-201ENST00000312989 CUX2O14529 1486 aa27.26■■□□□ 1.95
PPP1CA-201ENST00000312989 THOC2Q8NI27 1593 aaKnown RBP27.18■■□□□ 1.94
PPP1CA-201ENST00000312989 PDS5BQ9NTI5 1447 aa27.15■■□□□ 1.94
PPP1CA-201ENST00000312989 KIF21AQ7Z4S6 1674 aa27.12■■□□□ 1.93
PPP1CA-201ENST00000312989 CFTRP13569 1480 aa27.1■■□□□ 1.93
PPP1CA-201ENST00000312989 CCDC88BA6NC98 1476 aa27■■□□□ 1.91
PPP1CA-201ENST00000312989 MRC2Q9UBG0 1479 aa26.95■■□□□ 1.9
PPP1CA-201ENST00000312989 FANCD2Q9BXW9 1451 aa26.94■■□□□ 1.9
PPP1CA-201ENST00000312989 WDR62O43379 1518 aa26.91■■□□□ 1.9
PPP1CA-201ENST00000312989 CEP164Q9UPV0 1460 aa26.9■■□□□ 1.9
PPP1CA-201ENST00000312989 URB2Q14146 1524 aaKnown RBP26.75■■□□□ 1.87
PPP1CA-201ENST00000312989 DNAJC5Q9H3Z4 198 aa26.72■■□□□ 1.87
PPP1CA-201ENST00000312989 PRDM2Q13029 1718 aa26.71■■□□□ 1.87
PPP1CA-201ENST00000312989 TOPBP1Q92547 1522 aa26.51■■□□□ 1.83
PPP1CA-201ENST00000312989 SUPT5HO00267 1087 aaKnown RBP26.5■■□□□ 1.83
PPP1CA-201ENST00000312989 DNMBPQ6XZF7 1577 aa26.43■■□□□ 1.82
PPP1CA-201ENST00000312989 ABCC8Q09428 1581 aa26.4■■□□□ 1.82
PPP1CA-201ENST00000312989 IFT140Q96RY7 1462 aa26.37■■□□□ 1.81
PPP1CA-201ENST00000312989 ZNF608Q9ULD9 1512 aaPredicted RBP26.34■■□□□ 1.81
PPP1CA-201ENST00000312989 POLA1P09884 1462 aaPredicted RBP26.28■■□□□ 1.8
PPP1CA-201ENST00000312989 TARBP1Q13395 1621 aaKnown RBP26.26■■□□□ 1.79
PPP1CA-201ENST00000312989 CUX1P39880 1505 aa26.24■■□□□ 1.79
PPP1CA-201ENST00000312989 EIF4G3O43432 1585 aaKnown RBP26.18■■□□□ 1.78
PPP1CA-201ENST00000312989 RAD54L2Q9Y4B4 1467 aa26.17■■□□□ 1.78
PPP1CA-201ENST00000312989 FGD5Q6ZNL6 1462 aa26.16■■□□□ 1.78
PPP1CA-201ENST00000312989 AQRO60306 1485 aaKnown RBP eCLIP26.12■■□□□ 1.777e-8■■■■■ 41.6
PPP1CA-201ENST00000312989 SOGA1O94964 1423 aa26.1■■□□□ 1.77
PPP1CA-201ENST00000312989 TDRD9Q8NDG6 1382 aaKnown RBP26.02■■□□□ 1.76
PPP1CA-201ENST00000312989 OSCARQ8IYS5 282 aa26.01■■□□□ 1.75
PPP1CA-201ENST00000312989 WDR97A6NE52 1622 aa25.97■■□□□ 1.75
PPP1CA-201ENST00000312989 SYNJ1O43426 1573 aa25.93■■□□□ 1.74
PPP1CA-201ENST00000312989 WRNQ14191 1432 aaPredicted RBP eCLIP25.93■■□□□ 1.74
PPP1CA-201ENST00000312989 ABCA10Q8WWZ4 1543 aa25.92■■□□□ 1.74
PPP1CA-201ENST00000312989 TOP2BQ02880 1626 aa25.91■■□□□ 1.74
PPP1CA-201ENST00000312989 BIVM-ERCC5R4GMW8 1640 aa25.91■■□□□ 1.74
PPP1CA-201ENST00000312989 SNAPC4Q5SXM2 1469 aa25.87■■□□□ 1.73
PPP1CA-201ENST00000312989 GRIN2BQ13224 1484 aa25.84■■□□□ 1.73
PPP1CA-201ENST00000312989 ABCA5Q8WWZ7 1642 aa25.84■■□□□ 1.73
PPP1CA-201ENST00000312989 CHD1O14646 1710 aa25.82■■□□□ 1.72
PPP1CA-201ENST00000312989 GAPVD1Q14C86 1478 aa25.81■■□□□ 1.72
PPP1CA-201ENST00000312989 MAGI1Q96QZ7 1491 aaPredicted RBP25.8■■□□□ 1.72
PPP1CA-201ENST00000312989 PBRM1Q86U86 1689 aa25.72■■□□□ 1.71
PPP1CA-201ENST00000312989 SYNJ2O15056 1496 aa25.71■■□□□ 1.71
PPP1CA-201ENST00000312989 ARHGEF11O15085 1522 aa25.69■■□□□ 1.7
PPP1CA-201ENST00000312989 RIMBP3CA6NJZ7 1639 aa25.69■■□□□ 1.7
PPP1CA-201ENST00000312989 RIMBP3BA6NNM3 1639 aa25.69■■□□□ 1.7
PPP1CA-201ENST00000312989 RIMBP3Q9UFD9 1639 aa25.69■■□□□ 1.7
PPP1CA-201ENST00000312989 FBLN2P98095 1184 aa25.69■■□□□ 1.7
PPP1CA-201ENST00000312989 CLASP1Q7Z460 1538 aa25.67■■□□□ 1.7
PPP1CA-201ENST00000312989 CHMP7Q8WUX9 453 aaPredicted RBP25.62■■□□□ 1.69
PPP1CA-201ENST00000312989 TRIM41Q8WV44 630 aa25.62■■□□□ 1.69
PPP1CA-201ENST00000312989 ADAMTS12P58397 1594 aa25.6■■□□□ 1.69
PPP1CA-201ENST00000312989 ERICH3Q5RHP9 1530 aa25.56■■□□□ 1.68
PPP1CA-201ENST00000312989 GRIN2AQ12879 1464 aa25.54■■□□□ 1.68
PPP1CA-201ENST00000312989 ARAP1Q96P48 1450 aa25.51■■□□□ 1.67
PPP1CA-201ENST00000312989 FHAD1B1AJZ9 1412 aa25.51■■□□□ 1.67
PPP1CA-201ENST00000312989 NUP160Q12769 1436 aa25.49■■□□□ 1.67
PPP1CA-201ENST00000312989 CEP170Q5SW79 1584 aa25.45■■□□□ 1.66
PPP1CA-201ENST00000312989 IGF1RP08069 1367 aa25.38■■□□□ 1.65
PPP1CA-201ENST00000312989 CYB5RLQ6IPT4 315 aa25.37■■□□□ 1.65
PPP1CA-201ENST00000312989 KIF27Q86VH2 1401 aa25.36■■□□□ 1.65
PPP1CA-201ENST00000312989 ERCC6L2Q5T890 1561 aa25.31■■□□□ 1.64
PPP1CA-201ENST00000312989 SHROOM2Q13796 1616 aa25.3■■□□□ 1.64
PPP1CA-201ENST00000312989 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
PPP1CA-201ENST00000312989 CUL7Q14999 1698 aa25.23■■□□□ 1.63
PPP1CA-201ENST00000312989 CARMIL1Q5VZK9 1371 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms