RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 NISCHQ9Y2I1 1504 aa19.59■□□□□ 0.73
RNF40-204ENST00000563683 DCAF8L2P0C7V8 631 aa18.34■□□□□ 0.53
RNF40-204ENST00000563683 SHROOM4Q9ULL8 1493 aa18■□□□□ 0.47
RNF40-204ENST00000563683 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
RNF40-204ENST00000563683 HRCP23327 699 aa17.13■□□□□ 0.33
RNF40-204ENST00000563683 EHMT2Q96KQ7 1210 aa17■□□□□ 0.31
RNF40-204ENST00000563683 PCGF6Q9BYE7 350 aa16.82■□□□□ 0.28
RNF40-204ENST00000563683 FAM9AQ8IZU1 332 aaPredicted RBP16.79■□□□□ 0.28
RNF40-204ENST00000563683 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
RNF40-204ENST00000563683 PELP1Q8IZL8 1130 aaKnown RBP16.67■□□□□ 0.26
RNF40-204ENST00000563683 MYO15BQ96JP2 1530 aa16.62■□□□□ 0.25
RNF40-204ENST00000563683 PPARGC1BQ86YN6 1023 aaKnown RBP16.58■□□□□ 0.25
RNF40-204ENST00000563683 TRIM41Q8WV44 630 aa16.57■□□□□ 0.24
RNF40-204ENST00000563683 LOC105371045A0A1W2PR82 267 aa16.53■□□□□ 0.24
RNF40-204ENST00000563683 DCAF1Q9Y4B6 1507 aa16.5■□□□□ 0.23
RNF40-204ENST00000563683 ZCCHC6Q5VYS8 1495 aaKnown RBP16.46■□□□□ 0.23
RNF40-204ENST00000563683 TTBK1Q5TCY1 1321 aaPredicted RBP16.39■□□□□ 0.21
RNF40-204ENST00000563683 TRIM26Q12899 539 aaPredicted RBP16.35■□□□□ 0.21
RNF40-204ENST00000563683 ZEB1P37275 1124 aaPredicted RBP16.34■□□□□ 0.21
RNF40-204ENST00000563683 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
RNF40-204ENST00000563683 ABCC9O60706 1549 aa16.19■□□□□ 0.18
RNF40-204ENST00000563683 RANGAP1P46060 587 aaPredicted RBP16.14■□□□□ 0.17
RNF40-204ENST00000563683 MYT1Q01538 1121 aa16.09■□□□□ 0.17
RNF40-204ENST00000563683 UBTFP17480 764 aaKnown RBP16.08■□□□□ 0.17
RNF40-204ENST00000563683 SCAF1Q9H7N4 1312 aaKnown RBP16.07■□□□□ 0.16
RNF40-204ENST00000563683 APLP2Q06481 763 aa16.05■□□□□ 0.16
RNF40-204ENST00000563683 CCER1Q8TC90 406 aaPredicted RBP16.04■□□□□ 0.16
RNF40-204ENST00000563683 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.144e-10■■■■□ 20
RNF40-204ENST00000563683 SCRIBQ14160 1630 aa15.91■□□□□ 0.14
RNF40-204ENST00000563683 ACIN1Q9UKV3 1341 aaKnown RBP15.82■□□□□ 0.12
RNF40-204ENST00000563683 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.78■□□□□ 0.12
RNF40-204ENST00000563683 CENPBP07199 599 aaPredicted RBP15.77■□□□□ 0.11
RNF40-204ENST00000563683 RSF1Q96T23 1441 aaPredicted RBP15.7■□□□□ 0.1
RNF40-204ENST00000563683 NEUROD1Q13562 356 aa15.68■□□□□ 0.1
RNF40-204ENST00000563683 ATP1B4Q9UN42 357 aaPredicted RBP15.67■□□□□ 0.1
RNF40-204ENST00000563683 HNRNPUL2Q1KMD3 747 aaKnown RBP15.66■□□□□ 0.1
RNF40-204ENST00000563683 GTF3C3Q9Y5Q9 886 aa15.63■□□□□ 0.09
RNF40-204ENST00000563683 DIEXFQ68CQ4 756 aaKnown RBP15.59■□□□□ 0.09
RNF40-204ENST00000563683 YTHDC1Q96MU7 727 aaKnown RBP15.58■□□□□ 0.08
RNF40-204ENST00000563683 ITGAEP38570 1179 aa15.52■□□□□ 0.07
RNF40-204ENST00000563683 CSRNP3Q8WYN3 585 aa15.51■□□□□ 0.07
RNF40-204ENST00000563683 CECR2Q9BXF3 1484 aa15.49■□□□□ 0.07
RNF40-204ENST00000563683 RB1CC1Q8TDY2 1594 aa15.46■□□□□ 0.07
RNF40-204ENST00000563683 NACADO15069 1562 aa15.37■□□□□ 0.05
RNF40-204ENST00000563683 ZNF316A6NFI3 1004 aaPredicted RBP15.33■□□□□ 0.05
RNF40-204ENST00000563683 MROH2BQ7Z745 1585 aa15.29■□□□□ 0.04
RNF40-204ENST00000563683 WRNQ14191 1432 aaPredicted RBP eCLIP15.23■□□□□ 0.03
RNF40-204ENST00000563683 BAZ1AQ9NRL2 1556 aaPredicted RBP15.16■□□□□ 0.02
RNF40-204ENST00000563683 FAM50AQ14320 339 aaKnown RBP15.16■□□□□ 0.02
RNF40-204ENST00000563683 CLSPNQ9HAW4 1339 aa15.15■□□□□ 0.02
RNF40-204ENST00000563683 P3H3Q8IVL6 736 aa15.14■□□□□ 0.01
RNF40-204ENST00000563683 CEP162Q5TB80 1403 aa15.14■□□□□ 0.01
RNF40-204ENST00000563683 WIZO95785 1651 aa15.12■□□□□ 0.01
RNF40-204ENST00000563683 MIER1Q8N108 512 aa15.11■□□□□ 0.01
RNF40-204ENST00000563683 SOGA1O94964 1423 aa15.11■□□□□ 0.01
RNF40-204ENST00000563683 ABCC8Q09428 1581 aa15.07■□□□□ 0
RNF40-204ENST00000563683 CCDC88BA6NC98 1476 aa15.06■□□□□ 0
RNF40-204ENST00000563683 TNIKQ9UKE5 1360 aa15.06■□□□□ 0
RNF40-204ENST00000563683 CLIP1P30622 1438 aa15.04■□□□□ -0
RNF40-204ENST00000563683 EEA1Q15075 1411 aa14.99□□□□□ -0.01
RNF40-204ENST00000563683 GOLGA3Q08378 1498 aa14.99□□□□□ -0.01
RNF40-204ENST00000563683 BAZ1BQ9UIG0 1483 aaKnown RBP14.97□□□□□ -0.01
RNF40-204ENST00000563683 EIF4G1Q04637 1599 aaKnown RBP14.95□□□□□ -0.02
RNF40-204ENST00000563683 NEFLP07196 543 aa14.94□□□□□ -0.02
RNF40-204ENST00000563683 CNGB1Q14028 1251 aaPredicted RBP14.91□□□□□ -0.02
RNF40-204ENST00000563683 SUPT16HQ9Y5B9 1047 aaKnown RBP14.91□□□□□ -0.02
RNF40-204ENST00000563683 ARID3CA6NKF2 412 aa14.91□□□□□ -0.02
RNF40-204ENST00000563683 ANP32EQ9BTT0 268 aa14.9□□□□□ -0.02
RNF40-204ENST00000563683 CEP164Q9UPV0 1460 aa14.88□□□□□ -0.03
RNF40-204ENST00000563683 POLR3GLQ9BT43 218 aa14.87□□□□□ -0.03
RNF40-204ENST00000563683 TRIM52Q96A61 297 aa14.87□□□□□ -0.03
RNF40-204ENST00000563683 TOP2AP11388 1531 aaKnown RBP14.86□□□□□ -0.03
RNF40-204ENST00000563683 RUSC2Q8N2Y8 1516 aa14.86□□□□□ -0.03
RNF40-204ENST00000563683 TSHZ2Q9NRE2 1034 aa14.81□□□□□ -0.04
RNF40-204ENST00000563683 SMARCA4P51532 1647 aa14.8□□□□□ -0.04
RNF40-204ENST00000563683 BCANQ96GW7 911 aa14.77□□□□□ -0.05
RNF40-204ENST00000563683 FBLN2P98095 1184 aa14.76□□□□□ -0.05
RNF40-204ENST00000563683 KIF27Q86VH2 1401 aa14.75□□□□□ -0.05
RNF40-204ENST00000563683 BCL11AQ9H165 835 aa14.75□□□□□ -0.05
RNF40-204ENST00000563683 DDX10Q13206 875 aaKnown RBP14.73□□□□□ -0.05
RNF40-204ENST00000563683 KANK4Q5T7N3 995 aaPredicted RBP14.73□□□□□ -0.05
RNF40-204ENST00000563683 HIRIP3Q9BW71 556 aaPredicted RBP14.72□□□□□ -0.05
RNF40-204ENST00000563683 VPS8Q8N3P4 1428 aa14.72□□□□□ -0.05
RNF40-204ENST00000563683 ANP32CO43423 234 aa14.71□□□□□ -0.06
RNF40-204ENST00000563683 SMARCA2P51531 1590 aa14.7□□□□□ -0.06
RNF40-204ENST00000563683 ATAD2BQ9ULI0 1458 aa14.69□□□□□ -0.06
RNF40-204ENST00000563683 CHIC2Q9UKJ5 165 aa14.68□□□□□ -0.06
RNF40-204ENST00000563683 ZNF326Q5BKZ1 582 aaKnown RBP14.66□□□□□ -0.06
RNF40-204ENST00000563683 RAPGEF2Q9Y4G8 1499 aa14.66□□□□□ -0.06
RNF40-204ENST00000563683 ERICH6Q7L0X2 663 aa14.66□□□□□ -0.06
RNF40-204ENST00000563683 KIF21BO75037 1637 aa14.65□□□□□ -0.06
RNF40-204ENST00000563683 DHX57Q6P158 1386 aaKnown RBP14.65□□□□□ -0.06
RNF40-204ENST00000563683 CUX2O14529 1486 aa14.61□□□□□ -0.07
RNF40-204ENST00000563683 MTUS2Q5JR59 1369 aa14.61□□□□□ -0.07
RNF40-204ENST00000563683 ZNF777Q9ULD5 760 aaPredicted RBP14.61□□□□□ -0.07
RNF40-204ENST00000563683 TONSLQ96HA7 1378 aa14.61□□□□□ -0.07
RNF40-204ENST00000563683 SIN3AQ96ST3 1273 aa14.6□□□□□ -0.07
RNF40-204ENST00000563683 CARMIL1Q5VZK9 1371 aa14.59□□□□□ -0.07
RNF40-204ENST00000563683 MYT1LQ9UL68 1186 aa14.59□□□□□ -0.07
RNF40-204ENST00000563683 CCNB3Q8WWL7 1395 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms