RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 NISCHQ9Y2I1 1504 aa19.44■□□□□ 0.7
RNF40-202ENST00000357890 SHROOM4Q9ULL8 1493 aa16.98■□□□□ 0.31
RNF40-202ENST00000357890 SUPT5HO00267 1087 aaKnown RBP16.92■□□□□ 0.3
RNF40-202ENST00000357890 DCAF8L2P0C7V8 631 aa16.79■□□□□ 0.28
RNF40-202ENST00000357890 CCDC180Q9P1Z9 1646 aa16.69■□□□□ 0.26
RNF40-202ENST00000357890 PCGF6Q9BYE7 350 aa16.4■□□□□ 0.22
RNF40-202ENST00000357890 ZCCHC6Q5VYS8 1495 aaKnown RBP16.39■□□□□ 0.21
RNF40-202ENST00000357890 HRCP23327 699 aa16.29■□□□□ 0.2
RNF40-202ENST00000357890 PPARGC1BQ86YN6 1023 aaKnown RBP16.26■□□□□ 0.19
RNF40-202ENST00000357890 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
RNF40-202ENST00000357890 CHIC1Q5VXU3 224 aa16.11■□□□□ 0.17
RNF40-202ENST00000357890 ABCC9O60706 1549 aa16.1■□□□□ 0.17
RNF40-202ENST00000357890 LOC105371045A0A1W2PR82 267 aa15.85■□□□□ 0.13
RNF40-202ENST00000357890 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
RNF40-202ENST00000357890 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
RNF40-202ENST00000357890 MYO15BQ96JP2 1530 aa15.77■□□□□ 0.12
RNF40-202ENST00000357890 FAM9AQ8IZU1 332 aaPredicted RBP15.75■□□□□ 0.11
RNF40-202ENST00000357890 NACADO15069 1562 aa15.72■□□□□ 0.11
RNF40-202ENST00000357890 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
RNF40-202ENST00000357890 RB1CC1Q8TDY2 1594 aa15.64■□□□□ 0.09
RNF40-202ENST00000357890 MYT1Q01538 1121 aa15.63■□□□□ 0.09
RNF40-202ENST00000357890 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
RNF40-202ENST00000357890 SCAF1Q9H7N4 1312 aaKnown RBP15.53■□□□□ 0.08
RNF40-202ENST00000357890 SCRIBQ14160 1630 aa15.53■□□□□ 0.08
RNF40-202ENST00000357890 ZEB1P37275 1124 aaPredicted RBP15.48■□□□□ 0.07
RNF40-202ENST00000357890 RSF1Q96T23 1441 aaPredicted RBP15.46■□□□□ 0.06
RNF40-202ENST00000357890 CENPBP07199 599 aaPredicted RBP15.45■□□□□ 0.06
RNF40-202ENST00000357890 YTHDC1Q96MU7 727 aaKnown RBP15.38■□□□□ 0.05
RNF40-202ENST00000357890 TTBK1Q5TCY1 1321 aaPredicted RBP15.35■□□□□ 0.05
RNF40-202ENST00000357890 GTF3C3Q9Y5Q9 886 aa15.34■□□□□ 0.05
RNF40-202ENST00000357890 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
RNF40-202ENST00000357890 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.044e-10■■■■□ 20
RNF40-202ENST00000357890 ACIN1Q9UKV3 1341 aaKnown RBP15.22■□□□□ 0.03
RNF40-202ENST00000357890 NEUROD1Q13562 356 aa15.19■□□□□ 0.02
RNF40-202ENST00000357890 CECR2Q9BXF3 1484 aa15.18■□□□□ 0.02
RNF40-202ENST00000357890 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
RNF40-202ENST00000357890 MROH2BQ7Z745 1585 aa15.1■□□□□ 0.01
RNF40-202ENST00000357890 DIEXFQ68CQ4 756 aaKnown RBP15.09■□□□□ 0.01
RNF40-202ENST00000357890 UBTFP17480 764 aaKnown RBP15.02■□□□□ -0
RNF40-202ENST00000357890 BAZ1AQ9NRL2 1556 aaPredicted RBP14.99□□□□□ -0.01
RNF40-202ENST00000357890 WIZO95785 1651 aa14.97□□□□□ -0.01
RNF40-202ENST00000357890 RANGAP1P46060 587 aaPredicted RBP14.94□□□□□ -0.02
RNF40-202ENST00000357890 BICRAQ9NZM4 1560 aa14.9□□□□□ -0.02
RNF40-202ENST00000357890 UNC13AQ9UPW8 1703 aa14.9□□□□□ -0.02
RNF40-202ENST00000357890 APLP2Q06481 763 aa14.88□□□□□ -0.03
RNF40-202ENST00000357890 CSRNP3Q8WYN3 585 aa14.84□□□□□ -0.03
RNF40-202ENST00000357890 CCDC88BA6NC98 1476 aa14.8□□□□□ -0.04
RNF40-202ENST00000357890 TOP2AP11388 1531 aaKnown RBP14.79□□□□□ -0.04
RNF40-202ENST00000357890 HNRNPUL2Q1KMD3 747 aaKnown RBP14.79□□□□□ -0.04
RNF40-202ENST00000357890 ABCC8Q09428 1581 aa14.74□□□□□ -0.05
RNF40-202ENST00000357890 SMARCA4P51532 1647 aa14.74□□□□□ -0.05
RNF40-202ENST00000357890 EEA1Q15075 1411 aa14.73□□□□□ -0.05
RNF40-202ENST00000357890 CEP162Q5TB80 1403 aa14.72□□□□□ -0.05
RNF40-202ENST00000357890 TNIKQ9UKE5 1360 aa14.7□□□□□ -0.06
RNF40-202ENST00000357890 SOGA1O94964 1423 aa14.7□□□□□ -0.06
RNF40-202ENST00000357890 ERICH6Q7L0X2 663 aa14.67□□□□□ -0.06
RNF40-202ENST00000357890 SMARCA2P51531 1590 aa14.67□□□□□ -0.06
RNF40-202ENST00000357890 BCANQ96GW7 911 aa14.66□□□□□ -0.06
RNF40-202ENST00000357890 WRNQ14191 1432 aaPredicted RBP eCLIP14.65□□□□□ -0.06
RNF40-202ENST00000357890 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
RNF40-202ENST00000357890 GOLGA3Q08378 1498 aa14.62□□□□□ -0.07
RNF40-202ENST00000357890 ZNF316A6NFI3 1004 aaPredicted RBP14.62□□□□□ -0.07
RNF40-202ENST00000357890 EIF4G1Q04637 1599 aaKnown RBP14.62□□□□□ -0.07
RNF40-202ENST00000357890 BCL11AQ9H165 835 aa14.61□□□□□ -0.07
RNF40-202ENST00000357890 ATAD2BQ9ULI0 1458 aa14.61□□□□□ -0.07
RNF40-202ENST00000357890 MIER1Q8N108 512 aa14.56□□□□□ -0.08
RNF40-202ENST00000357890 RUSC2Q8N2Y8 1516 aa14.54□□□□□ -0.08
RNF40-202ENST00000357890 CEP164Q9UPV0 1460 aa14.53□□□□□ -0.08
RNF40-202ENST00000357890 CLIP1P30622 1438 aa14.52□□□□□ -0.09
RNF40-202ENST00000357890 NCAPD3P42695 1498 aa14.52□□□□□ -0.09
RNF40-202ENST00000357890 NEFLP07196 543 aa14.49□□□□□ -0.09
RNF40-202ENST00000357890 ITGAEP38570 1179 aa14.49□□□□□ -0.09
RNF40-202ENST00000357890 PEG3Q9GZU2 1588 aa14.48□□□□□ -0.09
RNF40-202ENST00000357890 ANP32EQ9BTT0 268 aa14.47□□□□□ -0.09
RNF40-202ENST00000357890 HMGXB3Q12766 1538 aa14.42□□□□□ -0.1
RNF40-202ENST00000357890 CC2D2AQ9P2K1 1620 aa14.41□□□□□ -0.1
RNF40-202ENST00000357890 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
RNF40-202ENST00000357890 VPS8Q8N3P4 1428 aa14.38□□□□□ -0.11
RNF40-202ENST00000357890 SYNJ1O43426 1573 aa14.33□□□□□ -0.12
RNF40-202ENST00000357890 RAPGEF2Q9Y4G8 1499 aa14.32□□□□□ -0.12
RNF40-202ENST00000357890 SUPT16HQ9Y5B9 1047 aaKnown RBP14.31□□□□□ -0.12
RNF40-202ENST00000357890 KIF21BO75037 1637 aa14.29□□□□□ -0.12
RNF40-202ENST00000357890 FKBP8Q14318 412 aa14.28□□□□□ -0.12
RNF40-202ENST00000357890 KIF27Q86VH2 1401 aa14.27□□□□□ -0.13
RNF40-202ENST00000357890 CADPSQ9ULU8 1353 aa14.24□□□□□ -0.13
RNF40-202ENST00000357890 TSHZ2Q9NRE2 1034 aa14.24□□□□□ -0.13
RNF40-202ENST00000357890 FAM50AQ14320 339 aaKnown RBP14.17□□□□□ -0.14
RNF40-202ENST00000357890 TOP2BQ02880 1626 aa14.17□□□□□ -0.14
RNF40-202ENST00000357890 CLSPNQ9HAW4 1339 aa14.17□□□□□ -0.14
RNF40-202ENST00000357890 KANK4Q5T7N3 995 aaPredicted RBP14.16□□□□□ -0.14
RNF40-202ENST00000357890 DNAJC5BQ9UF47 199 aa14.16□□□□□ -0.14
RNF40-202ENST00000357890 CFTRP13569 1480 aa14.15□□□□□ -0.14
RNF40-202ENST00000357890 PDS5BQ9NTI5 1447 aa14.12□□□□□ -0.15
RNF40-202ENST00000357890 PRXQ9BXM0 1461 aa14.11□□□□□ -0.15
RNF40-202ENST00000357890 ERICH3Q5RHP9 1530 aa14.11□□□□□ -0.15
RNF40-202ENST00000357890 P3H3Q8IVL6 736 aa14.1□□□□□ -0.15
RNF40-202ENST00000357890 CUX2O14529 1486 aa14.09□□□□□ -0.15
RNF40-202ENST00000357890 CCNB3Q8WWL7 1395 aa14.08□□□□□ -0.16
RNF40-202ENST00000357890 TRIM52Q96A61 297 aa14.07□□□□□ -0.16
RNF40-202ENST00000357890 CDK11AQ9UQ88 783 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms