RNA–Protein interactions for RNA: ENST00000592388.1

VAT1-209, Transcript of vesicle amine transport 1, humanhuman

TSL 5

Gene VAT1, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-209ENST00000592388 NISCHQ9Y2I1 1504 aa19.01■□□□□ 0.63
VAT1-209ENST00000592388 ABCC9O60706 1549 aa18.17■□□□□ 0.5
VAT1-209ENST00000592388 DNAJC5BQ9UF47 199 aa17.74■□□□□ 0.43
VAT1-209ENST00000592388 CCDC180Q9P1Z9 1646 aa17.29■□□□□ 0.36
VAT1-209ENST00000592388 RB1CC1Q8TDY2 1594 aa16.88■□□□□ 0.29
VAT1-209ENST00000592388 PABPN1Q86U42 306 aaKnown RBP eCLIP16.87■□□□□ 0.29
VAT1-209ENST00000592388 DNAJC5Q9H3Z4 198 aa16.78■□□□□ 0.28
VAT1-209ENST00000592388 NACADO15069 1562 aa16.57■□□□□ 0.24
VAT1-209ENST00000592388 DCAF8L2P0C7V8 631 aa16.55■□□□□ 0.24
VAT1-209ENST00000592388 UNC13AQ9UPW8 1703 aa16.46■□□□□ 0.23
VAT1-209ENST00000592388 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
VAT1-209ENST00000592388 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
VAT1-209ENST00000592388 CC2D2AQ9P2K1 1620 aa16.32■□□□□ 0.2
VAT1-209ENST00000592388 EIF4G1Q04637 1599 aaKnown RBP16.09■□□□□ 0.17
VAT1-209ENST00000592388 MYO15BQ96JP2 1530 aa16.04■□□□□ 0.16
VAT1-209ENST00000592388 SHROOM4Q9ULL8 1493 aa16.04■□□□□ 0.16
VAT1-209ENST00000592388 CUX2O14529 1486 aa15.88■□□□□ 0.13
VAT1-209ENST00000592388 TRIM41Q8WV44 630 aa15.84■□□□□ 0.13
VAT1-209ENST00000592388 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
VAT1-209ENST00000592388 ERCC6Q03468 1493 aa15.72■□□□□ 0.11
VAT1-209ENST00000592388 DCAF1Q9Y4B6 1507 aa15.59■□□□□ 0.09
VAT1-209ENST00000592388 ZCCHC6Q5VYS8 1495 aaKnown RBP15.59■□□□□ 0.09
VAT1-209ENST00000592388 NESP48681 1621 aa15.39■□□□□ 0.05
VAT1-209ENST00000592388 NCAPD3P42695 1498 aa15.33■□□□□ 0.05
VAT1-209ENST00000592388 THOC2Q8NI27 1593 aaKnown RBP15.3■□□□□ 0.04
VAT1-209ENST00000592388 SMARCA2P51531 1590 aa15.22■□□□□ 0.03
VAT1-209ENST00000592388 ATAD2BQ9ULI0 1458 aa15.21■□□□□ 0.03
VAT1-209ENST00000592388 HMGXB3Q12766 1538 aa15.12■□□□□ 0.01
VAT1-209ENST00000592388 OSCARQ8IYS5 282 aa15.11■□□□□ 0.01
VAT1-209ENST00000592388 KIF21AQ7Z4S6 1674 aa15.1■□□□□ 0.01
VAT1-209ENST00000592388 LAMC3Q9Y6N6 1575 aa15.07■□□□□ 0
VAT1-209ENST00000592388 PDS5BQ9NTI5 1447 aa15.07■□□□□ 0
VAT1-209ENST00000592388 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
VAT1-209ENST00000592388 AEBP2Q6ZN18 517 aaPredicted RBP15.05■□□□□ -0
VAT1-209ENST00000592388 BAZ1BQ9UIG0 1483 aaKnown RBP15.02■□□□□ -0
VAT1-209ENST00000592388 MRC2Q9UBG0 1479 aa14.97□□□□□ -0.01
VAT1-209ENST00000592388 SMARCA4P51532 1647 aa14.97□□□□□ -0.01
VAT1-209ENST00000592388 TRHP20396 242 aaPredicted RBP14.95□□□□□ -0.02
VAT1-209ENST00000592388 RIMBP3CA6NJZ7 1639 aa14.94□□□□□ -0.02
VAT1-209ENST00000592388 RIMBP3BA6NNM3 1639 aa14.94□□□□□ -0.02
VAT1-209ENST00000592388 RIMBP3Q9UFD9 1639 aa14.94□□□□□ -0.02
VAT1-209ENST00000592388 WDR62O43379 1518 aa14.93□□□□□ -0.02
VAT1-209ENST00000592388 CADPSQ9ULU8 1353 aa14.87□□□□□ -0.03
VAT1-209ENST00000592388 CYB5RLQ6IPT4 315 aa14.87□□□□□ -0.03
VAT1-209ENST00000592388 ARHGEF11O15085 1522 aa14.83□□□□□ -0.04
VAT1-209ENST00000592388 PEG3Q9GZU2 1588 aa14.79□□□□□ -0.04
VAT1-209ENST00000592388 CEP164Q9UPV0 1460 aa14.77□□□□□ -0.04
VAT1-209ENST00000592388 FANCD2Q9BXW9 1451 aa14.7□□□□□ -0.06
VAT1-209ENST00000592388 MROH2BQ7Z745 1585 aa14.67□□□□□ -0.06
VAT1-209ENST00000592388 ARAP1Q96P48 1450 aa14.64□□□□□ -0.07
VAT1-209ENST00000592388 URB2Q14146 1524 aaKnown RBP14.62□□□□□ -0.07
VAT1-209ENST00000592388 ZNF608Q9ULD9 1512 aaPredicted RBP14.59□□□□□ -0.07
VAT1-209ENST00000592388 CFTRP13569 1480 aa14.52□□□□□ -0.08
VAT1-209ENST00000592388 ILDR1Q86SU0 546 aaPredicted RBP14.52□□□□□ -0.09
VAT1-209ENST00000592388 FBLN2P98095 1184 aa14.5□□□□□ -0.09
VAT1-209ENST00000592388 IFT140Q96RY7 1462 aa14.49□□□□□ -0.09
VAT1-209ENST00000592388 RSF1Q96T23 1441 aaPredicted RBP14.47□□□□□ -0.09
VAT1-209ENST00000592388 WIZO95785 1651 aa14.46□□□□□ -0.1
VAT1-209ENST00000592388 CHD1O14646 1710 aa14.44□□□□□ -0.1
VAT1-209ENST00000592388 EIF4G3O43432 1585 aaKnown RBP14.41□□□□□ -0.1
VAT1-209ENST00000592388 AQRO60306 1485 aaKnown RBP eCLIP14.38□□□□□ -0.114e-10■■■■■ 30.5
VAT1-209ENST00000592388 TOPBP1Q92547 1522 aa14.33□□□□□ -0.12
VAT1-209ENST00000592388 CLASP1Q7Z460 1538 aa14.25□□□□□ -0.13
VAT1-209ENST00000592388 CHMP7Q8WUX9 453 aaPredicted RBP14.23□□□□□ -0.13
VAT1-209ENST00000592388 TARBP1Q13395 1621 aaKnown RBP14.23□□□□□ -0.13
VAT1-209ENST00000592388 GAPVD1Q14C86 1478 aa14.22□□□□□ -0.13
VAT1-209ENST00000592388 PRDM2Q13029 1718 aa14.21□□□□□ -0.13
VAT1-209ENST00000592388 ABCC8Q09428 1581 aa14.21□□□□□ -0.14
VAT1-209ENST00000592388 TOP2AP11388 1531 aaKnown RBP14.19□□□□□ -0.14
VAT1-209ENST00000592388 TDRD9Q8NDG6 1382 aaKnown RBP14.19□□□□□ -0.14
VAT1-209ENST00000592388 SNAPC4Q5SXM2 1469 aa14.18□□□□□ -0.14
VAT1-209ENST00000592388 SYNJ1O43426 1573 aa14.18□□□□□ -0.14
VAT1-209ENST00000592388 DNMBPQ6XZF7 1577 aa14.18□□□□□ -0.14
VAT1-209ENST00000592388 KDM4FA0A1W2PPD8 638 aa14.18□□□□□ -0.14
VAT1-209ENST00000592388 RAD54L2Q9Y4B4 1467 aa14.15□□□□□ -0.14
VAT1-209ENST00000592388 POLA1P09884 1462 aaPredicted RBP14.14□□□□□ -0.15
VAT1-209ENST00000592388 SOGA1O94964 1423 aa14.09□□□□□ -0.15
VAT1-209ENST00000592388 CCDC88BA6NC98 1476 aa14.08□□□□□ -0.16
VAT1-209ENST00000592388 MAGI1Q96QZ7 1491 aaPredicted RBP14.06□□□□□ -0.16
VAT1-209ENST00000592388 SYNJ2O15056 1496 aa14.06□□□□□ -0.16
VAT1-209ENST00000592388 ERCC6L2Q5T890 1561 aa14.04□□□□□ -0.16
VAT1-209ENST00000592388 KIF13AQ9H1H9 1805 aa14.04□□□□□ -0.16
VAT1-209ENST00000592388 GRIN2BQ13224 1484 aa14.02□□□□□ -0.16
VAT1-209ENST00000592388 FAM69CQ0P6D2 419 aa14□□□□□ -0.17
VAT1-209ENST00000592388 FGD5Q6ZNL6 1462 aa13.96□□□□□ -0.17
VAT1-209ENST00000592388 WDR97A6NE52 1622 aa13.96□□□□□ -0.17
VAT1-209ENST00000592388 KDM6BO15054 1643 aa13.91□□□□□ -0.18
VAT1-209ENST00000592388 ABCC10Q5T3U5 1492 aa13.91□□□□□ -0.18
VAT1-209ENST00000592388 CEP170Q5SW79 1584 aa13.91□□□□□ -0.18
VAT1-209ENST00000592388 HECW2Q9P2P5 1572 aa13.88□□□□□ -0.19
VAT1-209ENST00000592388 FBXO41Q8TF61 875 aa13.87□□□□□ -0.19
VAT1-209ENST00000592388 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
VAT1-209ENST00000592388 NPM1P06748 294 aaKnown RBP eCLIP13.86□□□□□ -0.19
VAT1-209ENST00000592388 ADGRL1O94910 1474 aa13.84□□□□□ -0.19
VAT1-209ENST00000592388 GRIN2AQ12879 1464 aa13.84□□□□□ -0.19
VAT1-209ENST00000592388 CUX1P39880 1505 aa13.82□□□□□ -0.2
VAT1-209ENST00000592388 DIP2BQ9P265 1576 aa13.82□□□□□ -0.2
VAT1-209ENST00000592388 NUP160Q12769 1436 aa13.81□□□□□ -0.2
VAT1-209ENST00000592388 TSPOAP1O95153 1857 aa13.8□□□□□ -0.2
VAT1-209ENST00000592388 PRG4Q92954 1404 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms