RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 DCAF8L2P0C7V8 631 aa35.65■■■■□ 3.3
RNF40-201ENST00000324685 SUPT5HO00267 1087 aaKnown RBP34.04■■■■□ 3.04
RNF40-201ENST00000324685 PELP1Q8IZL8 1130 aaKnown RBP33.74■■■□□ 2.99
RNF40-201ENST00000324685 NISCHQ9Y2I1 1504 aa33.22■■■□□ 2.91
RNF40-201ENST00000324685 SHROOM4Q9ULL8 1493 aa33.17■■■□□ 2.9
RNF40-201ENST00000324685 EHMT2Q96KQ7 1210 aa33.05■■■□□ 2.88
RNF40-201ENST00000324685 APLP2Q06481 763 aa32.94■■■□□ 2.86
RNF40-201ENST00000324685 FAM9AQ8IZU1 332 aaPredicted RBP32.4■■■□□ 2.78
RNF40-201ENST00000324685 ERICH6Q7L0X2 663 aa32.27■■■□□ 2.76
RNF40-201ENST00000324685 CENPBP07199 599 aaPredicted RBP32.23■■■□□ 2.75
RNF40-201ENST00000324685 CCER1Q8TC90 406 aaPredicted RBP32.21■■■□□ 2.75
RNF40-201ENST00000324685 PCGF6Q9BYE7 350 aa32.14■■■□□ 2.74
RNF40-201ENST00000324685 ZEB1P37275 1124 aaPredicted RBP32.1■■■□□ 2.73
RNF40-201ENST00000324685 TTBK1Q5TCY1 1321 aaPredicted RBP32.05■■■□□ 2.72
RNF40-201ENST00000324685 TRIM41Q8WV44 630 aa31.6■■■□□ 2.65
RNF40-201ENST00000324685 RANGAP1P46060 587 aaPredicted RBP31.6■■■□□ 2.65
RNF40-201ENST00000324685 MYT1Q01538 1121 aa31.59■■■□□ 2.65
RNF40-201ENST00000324685 NEFLP07196 543 aa31.59■■■□□ 2.65
RNF40-201ENST00000324685 ATP1B4Q9UN42 357 aaPredicted RBP31.48■■■□□ 2.63
RNF40-201ENST00000324685 UBTFP17480 764 aaKnown RBP31.33■■■□□ 2.61
RNF40-201ENST00000324685 YTHDC1Q96MU7 727 aaKnown RBP31.23■■■□□ 2.59
RNF40-201ENST00000324685 TRIM26Q12899 539 aaPredicted RBP30.82■■■□□ 2.52
RNF40-201ENST00000324685 DAXXQ9UER7 740 aaPredicted RBP30.81■■■□□ 2.52
RNF40-201ENST00000324685 PPARGC1BQ86YN6 1023 aaKnown RBP30.65■■■□□ 2.5
RNF40-201ENST00000324685 HRCP23327 699 aa30.51■■■□□ 2.47
RNF40-201ENST00000324685 POLR3GLQ9BT43 218 aa30.44■■■□□ 2.46
RNF40-201ENST00000324685 ITGAEP38570 1179 aa30.38■■■□□ 2.45
RNF40-201ENST00000324685 MYT1LQ9UL68 1186 aa30.36■■■□□ 2.45
RNF40-201ENST00000324685 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.3■■■□□ 2.44
RNF40-201ENST00000324685 HNRNPUL2Q1KMD3 747 aaKnown RBP30.3■■■□□ 2.44
RNF40-201ENST00000324685 RTL5Q5HYW3 569 aaPredicted RBP30.11■■■□□ 2.41
RNF40-201ENST00000324685 ZNF316A6NFI3 1004 aaPredicted RBP30.07■■■□□ 2.4
RNF40-201ENST00000324685 CNGB1Q14028 1251 aaPredicted RBP30■■■□□ 2.39
RNF40-201ENST00000324685 LOC105371045A0A1W2PR82 267 aa29.98■■■□□ 2.39
RNF40-201ENST00000324685 CLSPNQ9HAW4 1339 aa29.94■■■□□ 2.38
RNF40-201ENST00000324685 CHIC1Q5VXU3 224 aa29.92■■■□□ 2.38
RNF40-201ENST00000324685 DIEXFQ68CQ4 756 aaKnown RBP29.9■■■□□ 2.38
RNF40-201ENST00000324685 SLC4A1APQ9BWU0 796 aaKnown RBP29.9■■■□□ 2.38
RNF40-201ENST00000324685 FAM50AQ14320 339 aaKnown RBP29.63■■■□□ 2.33
RNF40-201ENST00000324685 TRIM52Q96A61 297 aa29.56■■■□□ 2.32
RNF40-201ENST00000324685 ANP32CO43423 234 aa29.45■■■□□ 2.31
RNF40-201ENST00000324685 CDK11AQ9UQ88 783 aaPredicted RBP29.45■■■□□ 2.31
RNF40-201ENST00000324685 NEUROD1Q13562 356 aa29.43■■■□□ 2.3
RNF40-201ENST00000324685 ZBTB47Q9UFB7 747 aaPredicted RBP29.41■■■□□ 2.3
RNF40-201ENST00000324685 BCANQ96GW7 911 aa29.38■■■□□ 2.29
RNF40-201ENST00000324685 GTF3C3Q9Y5Q9 886 aa29.34■■■□□ 2.29
RNF40-201ENST00000324685 ZNF326Q5BKZ1 582 aaKnown RBP29.2■■■□□ 2.27
RNF40-201ENST00000324685 CANXP27824 592 aaKnown RBP29.17■■■□□ 2.26
RNF40-201ENST00000324685 NEFMP07197 916 aa29.04■■■□□ 2.24
RNF40-201ENST00000324685 ANP32AP39687 249 aaKnown RBP29.02■■■□□ 2.24
RNF40-201ENST00000324685 ACIN1Q9UKV3 1341 aaKnown RBP28.89■■■□□ 2.22
RNF40-201ENST00000324685 SLC24A1O60721 1099 aa28.89■■■□□ 2.22
RNF40-201ENST00000324685 BCL11AQ9H165 835 aa28.82■■■□□ 2.2
RNF40-201ENST00000324685 PABPN1Q86U42 306 aaKnown RBP eCLIP28.78■■■□□ 2.24e-10■■■■□ 20
RNF40-201ENST00000324685 ANP32BQ92688 251 aaKnown RBP28.73■■■□□ 2.19
RNF40-201ENST00000324685 FBLN2P98095 1184 aa28.72■■■□□ 2.19
RNF40-201ENST00000324685 NPM2Q86SE8 214 aaKnown RBP28.71■■■□□ 2.19
RNF40-201ENST00000324685 ABCC9O60706 1549 aa28.62■■■□□ 2.17
RNF40-201ENST00000324685 CSRNP3Q8WYN3 585 aa28.58■■■□□ 2.17
RNF40-201ENST00000324685 UPF2Q9HAU5 1272 aaKnown RBP28.57■■■□□ 2.16
RNF40-201ENST00000324685 P3H3Q8IVL6 736 aa28.56■■■□□ 2.16
RNF40-201ENST00000324685 HSP90AA1P07900 732 aaKnown RBP28.55■■■□□ 2.16
RNF40-201ENST00000324685 FKBP8Q14318 412 aa28.54■■■□□ 2.16
RNF40-201ENST00000324685 ZNF777Q9ULD5 760 aaPredicted RBP28.52■■■□□ 2.16
RNF40-201ENST00000324685 TONSLQ96HA7 1378 aa28.5■■■□□ 2.15
RNF40-201ENST00000324685 ARID3CA6NKF2 412 aa28.47■■■□□ 2.15
RNF40-201ENST00000324685 EIF5BO60841 1220 aaKnown RBP28.45■■■□□ 2.15
RNF40-201ENST00000324685 HNRNPUQ00839 825 aaKnown RBP eCLIP28.41■■■□□ 2.14
RNF40-201ENST00000324685 GLIPR1L2Q4G1C9 344 aa28.36■■■□□ 2.13
RNF40-201ENST00000324685 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.32■■■□□ 2.12
RNF40-201ENST00000324685 ESF1Q9H501 851 aaKnown RBP28.31■■■□□ 2.12
RNF40-201ENST00000324685 FAM9BQ8IZU0 186 aa28.3■■■□□ 2.12
RNF40-201ENST00000324685 CCDC136Q96JN2 1154 aa28.24■■■□□ 2.11
RNF40-201ENST00000324685 DDX10Q13206 875 aaKnown RBP28.24■■■□□ 2.11
RNF40-201ENST00000324685 STAG3Q9UJ98 1225 aa28.23■■■□□ 2.11
RNF40-201ENST00000324685 CHGAP10645 457 aaKnown RBP28.23■■■□□ 2.11
RNF40-201ENST00000324685 TMC1Q8TDI8 760 aa28.18■■■□□ 2.1
RNF40-201ENST00000324685 DCAF1Q9Y4B6 1507 aa28.17■■■□□ 2.1
RNF40-201ENST00000324685 WDR43Q15061 677 aaKnown RBP eCLIP28.13■■■□□ 2.09
RNF40-201ENST00000324685 SALL2Q9Y467 1007 aaPredicted RBP28.1■■■□□ 2.09
RNF40-201ENST00000324685 NBR1Q14596 966 aa28.08■■■□□ 2.09
RNF40-201ENST00000324685 MRS2Q9HD23 443 aa28.02■■■□□ 2.08
RNF40-201ENST00000324685 MYH16Q9H6N6 1097 aa27.98■■■□□ 2.07
RNF40-201ENST00000324685 NPM1P06748 294 aaKnown RBP eCLIP27.95■■■□□ 2.07
RNF40-201ENST00000324685 CHIC2Q9UKJ5 165 aa27.93■■■□□ 2.06
RNF40-201ENST00000324685 ARXQ96QS3 562 aa27.91■■■□□ 2.06
RNF40-201ENST00000324685 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.91■■■□□ 2.066e-7■■□□□ 13.6
RNF40-201ENST00000324685 DDRGK1Q96HY6 314 aa27.91■■■□□ 2.06
RNF40-201ENST00000324685 BECN1Q14457 450 aa27.86■■■□□ 2.05
RNF40-201ENST00000324685 TSPY4P0CV99 314 aa27.85■■■□□ 2.05
RNF40-201ENST00000324685 TSPY10P0CW01 314 aa27.85■■■□□ 2.05
RNF40-201ENST00000324685 ANP32EQ9BTT0 268 aa27.83■■■□□ 2.05
RNF40-201ENST00000324685 KDM2AQ9Y2K7 1162 aa27.82■■■□□ 2.04
RNF40-201ENST00000324685 CDK11BP21127 795 aaKnown RBP27.81■■■□□ 2.04
RNF40-201ENST00000324685 SCRIBQ14160 1630 aa27.79■■■□□ 2.04
RNF40-201ENST00000324685 NCLP19338 710 aaKnown RBP27.78■■■□□ 2.04
RNF40-201ENST00000324685 MTUS2Q5JR59 1369 aa27.78■■■□□ 2.04
RNF40-201ENST00000324685 EIF4G2P78344 907 aaKnown RBP eCLIP27.78■■■□□ 2.04
RNF40-201ENST00000324685 PLPPR3Q6T4P5 718 aa27.76■■■□□ 2.03
RNF40-201ENST00000324685 MIER1Q8N108 512 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms