RNA–Protein interactions for RNA: ENST00000543939.5

COPS7A-218, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 1,728 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-218ENST00000543939 NISCHQ9Y2I1 1504 aa44.83■■■■■ 4.77
COPS7A-218ENST00000543939 CCDC180Q9P1Z9 1646 aa39.07■■■■□ 3.85
COPS7A-218ENST00000543939 ZCCHC6Q5VYS8 1495 aaKnown RBP37.69■■■■□ 3.62
COPS7A-218ENST00000543939 DCAF1Q9Y4B6 1507 aa37.08■■■■□ 3.53
COPS7A-218ENST00000543939 DCAF8L2P0C7V8 631 aa36.9■■■■□ 3.5
COPS7A-218ENST00000543939 ABCC9O60706 1549 aa36.8■■■■□ 3.48
COPS7A-218ENST00000543939 MYO15BQ96JP2 1530 aa36.6■■■■□ 3.45
COPS7A-218ENST00000543939 SHROOM4Q9ULL8 1493 aa36.6■■■■□ 3.45
COPS7A-218ENST00000543939 NACADO15069 1562 aa36.34■■■■□ 3.41
COPS7A-218ENST00000543939 RB1CC1Q8TDY2 1594 aa36■■■■□ 3.35
COPS7A-218ENST00000543939 SCRIBQ14160 1630 aa35.92■■■■□ 3.34
COPS7A-218ENST00000543939 UNC13AQ9UPW8 1703 aa35.36■■■■□ 3.25
COPS7A-218ENST00000543939 SUPT5HO00267 1087 aaKnown RBP35.25■■■■□ 3.23
COPS7A-218ENST00000543939 BICRAQ9NZM4 1560 aa34.95■■■■□ 3.19
COPS7A-218ENST00000543939 CECR2Q9BXF3 1484 aa34.83■■■■□ 3.17
COPS7A-218ENST00000543939 RSF1Q96T23 1441 aaPredicted RBP34.81■■■■□ 3.16
COPS7A-218ENST00000543939 PABPN1Q86U42 306 aaKnown RBP eCLIP34.71■■■■□ 3.15
COPS7A-218ENST00000543939 MROH2BQ7Z745 1585 aa34.65■■■■□ 3.14
COPS7A-218ENST00000543939 BAZ1AQ9NRL2 1556 aaPredicted RBP34.6■■■■□ 3.13
COPS7A-218ENST00000543939 SMARCA4P51532 1647 aa34.45■■■■□ 3.11
COPS7A-218ENST00000543939 WIZO95785 1651 aa34.38■■■■□ 3.09
COPS7A-218ENST00000543939 PEG3Q9GZU2 1588 aa34.03■■■■□ 3.04
COPS7A-218ENST00000543939 TOP2AP11388 1531 aaKnown RBP34.01■■■■□ 3.04
COPS7A-218ENST00000543939 EIF4G1Q04637 1599 aaKnown RBP33.86■■■■□ 3.01
COPS7A-218ENST00000543939 CHIC1Q5VXU3 224 aa33.84■■■■□ 3.01
COPS7A-218ENST00000543939 ATAD2BQ9ULI0 1458 aa33.84■■■■□ 3.01
COPS7A-218ENST00000543939 SMARCA2P51531 1590 aa33.82■■■■□ 3.01
COPS7A-218ENST00000543939 CCDC88BA6NC98 1476 aa33.66■■■□□ 2.98
COPS7A-218ENST00000543939 BAZ1BQ9UIG0 1483 aaKnown RBP33.65■■■□□ 2.98
COPS7A-218ENST00000543939 NCAPD3P42695 1498 aa33.54■■■□□ 2.96
COPS7A-218ENST00000543939 HMGXB3Q12766 1538 aa33.51■■■□□ 2.95
COPS7A-218ENST00000543939 CC2D2AQ9P2K1 1620 aa33.34■■■□□ 2.93
COPS7A-218ENST00000543939 TRIM41Q8WV44 630 aa33.14■■■□□ 2.89
COPS7A-218ENST00000543939 ABCC8Q09428 1581 aa32.99■■■□□ 2.87
COPS7A-218ENST00000543939 CFTRP13569 1480 aa32.82■■■□□ 2.84
COPS7A-218ENST00000543939 WRNQ14191 1432 aaPredicted RBP eCLIP32.75■■■□□ 2.83
COPS7A-218ENST00000543939 PRDM2Q13029 1718 aa32.72■■■□□ 2.83
COPS7A-218ENST00000543939 CADPSQ9ULU8 1353 aa32.67■■■□□ 2.82
COPS7A-218ENST00000543939 SYNJ1O43426 1573 aa32.65■■■□□ 2.82
COPS7A-218ENST00000543939 LOC105371045A0A1W2PR82 267 aa32.54■■■□□ 2.8
COPS7A-218ENST00000543939 FAM9AQ8IZU1 332 aaPredicted RBP32.53■■■□□ 2.8
COPS7A-218ENST00000543939 TOP2BQ02880 1626 aa32.51■■■□□ 2.79
COPS7A-218ENST00000543939 BIVM-ERCC5R4GMW8 1640 aa32.49■■■□□ 2.79
COPS7A-218ENST00000543939 DNAJC5BQ9UF47 199 aa32.45■■■□□ 2.78
COPS7A-218ENST00000543939 CUX1P39880 1505 aa32.39■■■□□ 2.78
COPS7A-218ENST00000543939 LAMC3Q9Y6N6 1575 aa32.38■■■□□ 2.77
COPS7A-218ENST00000543939 SOGA1O94964 1423 aa32.38■■■□□ 2.77
COPS7A-218ENST00000543939 NESP48681 1621 aa32.37■■■□□ 2.77
COPS7A-218ENST00000543939 EEA1Q15075 1411 aa32.34■■■□□ 2.77
COPS7A-218ENST00000543939 FANCD2Q9BXW9 1451 aa32.31■■■□□ 2.76
COPS7A-218ENST00000543939 RUSC2Q8N2Y8 1516 aa32.27■■■□□ 2.76
COPS7A-218ENST00000543939 CSRNP3Q8WYN3 585 aa32.14■■■□□ 2.74
COPS7A-218ENST00000543939 PDS5BQ9NTI5 1447 aa32.09■■■□□ 2.73
COPS7A-218ENST00000543939 CEP164Q9UPV0 1460 aa32.09■■■□□ 2.73
COPS7A-218ENST00000543939 DNMBPQ6XZF7 1577 aa32.07■■■□□ 2.72
COPS7A-218ENST00000543939 EHMT2Q96KQ7 1210 aa32.05■■■□□ 2.72
COPS7A-218ENST00000543939 KIF21AQ7Z4S6 1674 aa32.01■■■□□ 2.71
COPS7A-218ENST00000543939 FGD5Q6ZNL6 1462 aa32■■■□□ 2.71
COPS7A-218ENST00000543939 TOPBP1Q92547 1522 aa31.99■■■□□ 2.71
COPS7A-218ENST00000543939 KIF21BO75037 1637 aa31.95■■■□□ 2.7
COPS7A-218ENST00000543939 URB2Q14146 1524 aaKnown RBP31.92■■■□□ 2.7
COPS7A-218ENST00000543939 KIF27Q86VH2 1401 aa31.9■■■□□ 2.7
COPS7A-218ENST00000543939 GOLGA3Q08378 1498 aa31.9■■■□□ 2.7
COPS7A-218ENST00000543939 POLA1P09884 1462 aaPredicted RBP31.84■■■□□ 2.69
COPS7A-218ENST00000543939 TNIKQ9UKE5 1360 aa31.82■■■□□ 2.68
COPS7A-218ENST00000543939 CUX2O14529 1486 aa31.8■■■□□ 2.68
COPS7A-218ENST00000543939 PRXQ9BXM0 1461 aa31.74■■■□□ 2.67
COPS7A-218ENST00000543939 ABCA10Q8WWZ4 1543 aa31.73■■■□□ 2.67
COPS7A-218ENST00000543939 RAD54L2Q9Y4B4 1467 aa31.73■■■□□ 2.67
COPS7A-218ENST00000543939 RAPGEF2Q9Y4G8 1499 aa31.72■■■□□ 2.67
COPS7A-218ENST00000543939 UBTFP17480 764 aaKnown RBP31.72■■■□□ 2.67
COPS7A-218ENST00000543939 ERICH3Q5RHP9 1530 aa31.7■■■□□ 2.67
COPS7A-218ENST00000543939 MRC2Q9UBG0 1479 aa31.7■■■□□ 2.66
COPS7A-218ENST00000543939 WDR97A6NE52 1622 aa31.66■■■□□ 2.66
COPS7A-218ENST00000543939 CEP162Q5TB80 1403 aa31.65■■■□□ 2.66
COPS7A-218ENST00000543939 IGF1RP08069 1367 aa31.62■■■□□ 2.65
COPS7A-218ENST00000543939 WDR62O43379 1518 aa31.55■■■□□ 2.64
COPS7A-218ENST00000543939 TARBP1Q13395 1621 aaKnown RBP31.53■■■□□ 2.64
COPS7A-218ENST00000543939 ERCC6Q03468 1493 aa31.52■■■□□ 2.64
COPS7A-218ENST00000543939 ABCA5Q8WWZ7 1642 aa31.48■■■□□ 2.63
COPS7A-218ENST00000543939 CARMIL1Q5VZK9 1371 aa31.46■■■□□ 2.63
COPS7A-218ENST00000543939 THOC2Q8NI27 1593 aaKnown RBP31.44■■■□□ 2.62
COPS7A-218ENST00000543939 CUL7Q14999 1698 aa31.4■■■□□ 2.62
COPS7A-218ENST00000543939 TDRD9Q8NDG6 1382 aaKnown RBP31.39■■■□□ 2.62
COPS7A-218ENST00000543939 GAPVD1Q14C86 1478 aa31.38■■■□□ 2.61
COPS7A-218ENST00000543939 CLIP1P30622 1438 aa31.38■■■□□ 2.61
COPS7A-218ENST00000543939 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
COPS7A-218ENST00000543939 PBRM1Q86U86 1689 aa31.24■■■□□ 2.59
COPS7A-218ENST00000543939 AQRO60306 1485 aaKnown RBP eCLIP31.19■■■□□ 2.58
COPS7A-218ENST00000543939 ZNF608Q9ULD9 1512 aaPredicted RBP31.16■■■□□ 2.58
COPS7A-218ENST00000543939 RANGAP1P46060 587 aaPredicted RBP31.15■■■□□ 2.58
COPS7A-218ENST00000543939 VPS8Q8N3P4 1428 aa31.13■■■□□ 2.57
COPS7A-218ENST00000543939 TRIM26Q12899 539 aaPredicted RBP31.12■■■□□ 2.57
COPS7A-218ENST00000543939 PCGF6Q9BYE7 350 aa31.12■■■□□ 2.57
COPS7A-218ENST00000543939 GRIN2BQ13224 1484 aa31.11■■■□□ 2.57
COPS7A-218ENST00000543939 ARAP1Q96P48 1450 aa31.1■■■□□ 2.57
COPS7A-218ENST00000543939 CTTNBP2Q8WZ74 1663 aa31.09■■■□□ 2.57
COPS7A-218ENST00000543939 EIF4G3O43432 1585 aaKnown RBP31.07■■■□□ 2.56
COPS7A-218ENST00000543939 ARHGAP35Q9NRY4 1499 aa31.06■■■□□ 2.56
COPS7A-218ENST00000543939 ADAMTS12P58397 1594 aa31.06■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms