RNA–Protein interactions for RNA: ENST00000355653.7

VAT1-201, Transcript of vesicle amine transport 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAT1, Length 2,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-201ENST00000355653 NISCHQ9Y2I1 1504 aa29.93■■■□□ 2.38
VAT1-201ENST00000355653 SHROOM4Q9ULL8 1493 aa26.13■■□□□ 1.77
VAT1-201ENST00000355653 SUPT5HO00267 1087 aaKnown RBP25.91■■□□□ 1.74
VAT1-201ENST00000355653 HRCP23327 699 aa25.57■■□□□ 1.68
VAT1-201ENST00000355653 MYO15BQ96JP2 1530 aa25.37■■□□□ 1.65
VAT1-201ENST00000355653 ZCCHC6Q5VYS8 1495 aaKnown RBP25.32■■□□□ 1.64
VAT1-201ENST00000355653 PCGF6Q9BYE7 350 aa25.3■■□□□ 1.64
VAT1-201ENST00000355653 CHIC1Q5VXU3 224 aa25.28■■□□□ 1.64
VAT1-201ENST00000355653 CCDC180Q9P1Z9 1646 aa25.2■■□□□ 1.62
VAT1-201ENST00000355653 PPARGC1BQ86YN6 1023 aaKnown RBP25.15■■□□□ 1.62
VAT1-201ENST00000355653 DCAF8L2P0C7V8 631 aa25.13■■□□□ 1.61
VAT1-201ENST00000355653 LOC105371045A0A1W2PR82 267 aa24.73■■□□□ 1.55
VAT1-201ENST00000355653 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
VAT1-201ENST00000355653 TRIM26Q12899 539 aaPredicted RBP24.5■■□□□ 1.51
VAT1-201ENST00000355653 ZEB1P37275 1124 aaPredicted RBP24.16■■□□□ 1.46
VAT1-201ENST00000355653 PELP1Q8IZL8 1130 aaKnown RBP24.12■■□□□ 1.45
VAT1-201ENST00000355653 SCAF1Q9H7N4 1312 aaKnown RBP24.04■■□□□ 1.44
VAT1-201ENST00000355653 FAM9AQ8IZU1 332 aaPredicted RBP23.99■■□□□ 1.43
VAT1-201ENST00000355653 TRIM41Q8WV44 630 aa23.95■■□□□ 1.42
VAT1-201ENST00000355653 EHMT2Q96KQ7 1210 aa23.95■■□□□ 1.42
VAT1-201ENST00000355653 ABCC9O60706 1549 aa23.88■■□□□ 1.41
VAT1-201ENST00000355653 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
VAT1-201ENST00000355653 RSF1Q96T23 1441 aaPredicted RBP23.82■■□□□ 1.4
VAT1-201ENST00000355653 RB1CC1Q8TDY2 1594 aa23.64■■□□□ 1.38
VAT1-201ENST00000355653 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.57■■□□□ 1.36
VAT1-201ENST00000355653 ACIN1Q9UKV3 1341 aaKnown RBP23.54■■□□□ 1.36
VAT1-201ENST00000355653 CCER1Q8TC90 406 aaPredicted RBP23.52■■□□□ 1.36
VAT1-201ENST00000355653 NEUROD1Q13562 356 aa23.52■■□□□ 1.36
VAT1-201ENST00000355653 CECR2Q9BXF3 1484 aa23.47■■□□□ 1.35
VAT1-201ENST00000355653 GTF3C3Q9Y5Q9 886 aa23.38■■□□□ 1.33
VAT1-201ENST00000355653 DIEXFQ68CQ4 756 aaKnown RBP23.36■■□□□ 1.33
VAT1-201ENST00000355653 NACADO15069 1562 aa23.35■■□□□ 1.33
VAT1-201ENST00000355653 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
VAT1-201ENST00000355653 CENPBP07199 599 aaPredicted RBP23.32■■□□□ 1.32
VAT1-201ENST00000355653 TTBK1Q5TCY1 1321 aaPredicted RBP23.31■■□□□ 1.32
VAT1-201ENST00000355653 WIZO95785 1651 aa23.21■■□□□ 1.31
VAT1-201ENST00000355653 MYT1Q01538 1121 aa23.04■■□□□ 1.28
VAT1-201ENST00000355653 YTHDC1Q96MU7 727 aaKnown RBP23.04■■□□□ 1.28
VAT1-201ENST00000355653 BAZ1AQ9NRL2 1556 aaPredicted RBP22.96■■□□□ 1.27
VAT1-201ENST00000355653 ZNF316A6NFI3 1004 aaPredicted RBP22.95■■□□□ 1.26
VAT1-201ENST00000355653 CEP162Q5TB80 1403 aa22.91■■□□□ 1.26
VAT1-201ENST00000355653 WRNQ14191 1432 aaPredicted RBP eCLIP22.9■■□□□ 1.261e-6■■■□□ 16.6
VAT1-201ENST00000355653 ABCC8Q09428 1581 aa22.86■■□□□ 1.25
VAT1-201ENST00000355653 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
VAT1-201ENST00000355653 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
VAT1-201ENST00000355653 UBTFP17480 764 aaKnown RBP22.8■■□□□ 1.24
VAT1-201ENST00000355653 MIER1Q8N108 512 aa22.79■■□□□ 1.24
VAT1-201ENST00000355653 SOGA1O94964 1423 aa22.77■■□□□ 1.23
VAT1-201ENST00000355653 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
VAT1-201ENST00000355653 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
VAT1-201ENST00000355653 TNIKQ9UKE5 1360 aa22.73■■□□□ 1.23
VAT1-201ENST00000355653 HNRNPUL2Q1KMD3 747 aaKnown RBP22.71■■□□□ 1.23
VAT1-201ENST00000355653 SMARCA2P51531 1590 aa22.68■■□□□ 1.22
VAT1-201ENST00000355653 PABPN1Q86U42 306 aaKnown RBP eCLIP22.67■■□□□ 1.22
VAT1-201ENST00000355653 CSRNP3Q8WYN3 585 aa22.66■■□□□ 1.22
VAT1-201ENST00000355653 RUSC2Q8N2Y8 1516 aa22.63■■□□□ 1.21
VAT1-201ENST00000355653 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
VAT1-201ENST00000355653 GOLGA3Q08378 1498 aa22.52■■□□□ 1.2
VAT1-201ENST00000355653 EEA1Q15075 1411 aa22.52■■□□□ 1.2
VAT1-201ENST00000355653 RANGAP1P46060 587 aaPredicted RBP22.41■■□□□ 1.18
VAT1-201ENST00000355653 BICRAQ9NZM4 1560 aa22.39■■□□□ 1.18
VAT1-201ENST00000355653 APLP2Q06481 763 aa22.39■■□□□ 1.17
VAT1-201ENST00000355653 CLIP1P30622 1438 aa22.36■■□□□ 1.17
VAT1-201ENST00000355653 CEP164Q9UPV0 1460 aa22.31■■□□□ 1.16
VAT1-201ENST00000355653 SUPT16HQ9Y5B9 1047 aaKnown RBP22.3■■□□□ 1.16
VAT1-201ENST00000355653 VPS8Q8N3P4 1428 aa22.28■■□□□ 1.16
VAT1-201ENST00000355653 SYNJ1O43426 1573 aa22.22■■□□□ 1.15
VAT1-201ENST00000355653 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
VAT1-201ENST00000355653 KIF21BO75037 1637 aa22.2■■□□□ 1.14
VAT1-201ENST00000355653 ATAD2BQ9ULI0 1458 aa22.19■■□□□ 1.14
VAT1-201ENST00000355653 CLSPNQ9HAW4 1339 aa22.17■■□□□ 1.14
VAT1-201ENST00000355653 RAPGEF2Q9Y4G8 1499 aa22.15■■□□□ 1.14
VAT1-201ENST00000355653 DHX57Q6P158 1386 aaKnown RBP22.14■■□□□ 1.13
VAT1-201ENST00000355653 BAZ1BQ9UIG0 1483 aaKnown RBP22.13■■□□□ 1.13
VAT1-201ENST00000355653 TSHZ2Q9NRE2 1034 aa22.1■■□□□ 1.13
VAT1-201ENST00000355653 KANK4Q5T7N3 995 aaPredicted RBP21.99■■□□□ 1.11
VAT1-201ENST00000355653 ANP32EQ9BTT0 268 aa21.99■■□□□ 1.11
VAT1-201ENST00000355653 BCANQ96GW7 911 aa21.98■■□□□ 1.11
VAT1-201ENST00000355653 KCNH8Q96L42 1107 aa21.98■■□□□ 1.11
VAT1-201ENST00000355653 ITGAEP38570 1179 aa21.95■■□□□ 1.1
VAT1-201ENST00000355653 ARAP1Q96P48 1450 aa21.87■■□□□ 1.09
VAT1-201ENST00000355653 TOP2BQ02880 1626 aa21.87■■□□□ 1.09
VAT1-201ENST00000355653 FKBP8Q14318 412 aa21.83■■□□□ 1.09
VAT1-201ENST00000355653 RRBP1Q9P2E9 1410 aaKnown RBP21.8■■□□□ 1.08
VAT1-201ENST00000355653 CCNB3Q8WWL7 1395 aa21.78■■□□□ 1.08
VAT1-201ENST00000355653 DDX10Q13206 875 aaKnown RBP21.76■■□□□ 1.07
VAT1-201ENST00000355653 PRXQ9BXM0 1461 aa21.75■■□□□ 1.07
VAT1-201ENST00000355653 BIVM-ERCC5R4GMW8 1640 aa21.73■■□□□ 1.07
VAT1-201ENST00000355653 BCL11AQ9H165 835 aa21.72■■□□□ 1.07
VAT1-201ENST00000355653 ERICH3Q5RHP9 1530 aa21.72■■□□□ 1.07
VAT1-201ENST00000355653 RAB3GAP2Q9H2M9 1393 aa21.71■■□□□ 1.07
VAT1-201ENST00000355653 CUX2O14529 1486 aa21.7■■□□□ 1.06
VAT1-201ENST00000355653 CUX1P39880 1505 aa21.7■■□□□ 1.06
VAT1-201ENST00000355653 NCAPD3P42695 1498 aa21.69■■□□□ 1.06
VAT1-201ENST00000355653 NEFLP07196 543 aa21.68■■□□□ 1.06
VAT1-201ENST00000355653 TRIM52Q96A61 297 aa21.64■■□□□ 1.06
VAT1-201ENST00000355653 MAPKBP1O60336 1514 aa21.64■■□□□ 1.06
VAT1-201ENST00000355653 KIF27Q86VH2 1401 aa21.64■■□□□ 1.06
VAT1-201ENST00000355653 HIRIP3Q9BW71 556 aaPredicted RBP21.64■■□□□ 1.05
VAT1-201ENST00000355653 SIN3AQ96ST3 1273 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms