RNA–Protein interactions for RNA: ENST00000602784.1

RNF40-212, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 991 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-212ENST00000602784 NISCHQ9Y2I1 1504 aa33.34■■■□□ 2.93
RNF40-212ENST00000602784 CCDC180Q9P1Z9 1646 aa29.55■■■□□ 2.32
RNF40-212ENST00000602784 ABCC9O60706 1549 aa28.66■■■□□ 2.18
RNF40-212ENST00000602784 ZCCHC6Q5VYS8 1495 aaKnown RBP27.81■■■□□ 2.04
RNF40-212ENST00000602784 NACADO15069 1562 aa27.76■■■□□ 2.03
RNF40-212ENST00000602784 DCAF8L2P0C7V8 631 aa27.72■■■□□ 2.03
RNF40-212ENST00000602784 MYO15BQ96JP2 1530 aa27.72■■■□□ 2.03
RNF40-212ENST00000602784 RB1CC1Q8TDY2 1594 aa27.71■■■□□ 2.03
RNF40-212ENST00000602784 DCAF1Q9Y4B6 1507 aa27.65■■■□□ 2.02
RNF40-212ENST00000602784 UNC13AQ9UPW8 1703 aa27.02■■□□□ 1.92
RNF40-212ENST00000602784 SCRIBQ14160 1630 aa26.91■■□□□ 1.9
RNF40-212ENST00000602784 BICRAQ9NZM4 1560 aa26.85■■□□□ 1.89
RNF40-212ENST00000602784 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.884e-10■■■■□ 20
RNF40-212ENST00000602784 SHROOM4Q9ULL8 1493 aa26.67■■□□□ 1.86
RNF40-212ENST00000602784 DNAJC5BQ9UF47 199 aa26.14■■□□□ 1.78
RNF40-212ENST00000602784 EIF4G1Q04637 1599 aaKnown RBP26.12■■□□□ 1.77
RNF40-212ENST00000602784 CC2D2AQ9P2K1 1620 aa25.96■■□□□ 1.75
RNF40-212ENST00000602784 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
RNF40-212ENST00000602784 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
RNF40-212ENST00000602784 SMARCA4P51532 1647 aa25.81■■□□□ 1.72
RNF40-212ENST00000602784 MROH2BQ7Z745 1585 aa25.67■■□□□ 1.7
RNF40-212ENST00000602784 NCAPD3P42695 1498 aa25.63■■□□□ 1.69
RNF40-212ENST00000602784 ATAD2BQ9ULI0 1458 aa25.63■■□□□ 1.69
RNF40-212ENST00000602784 SMARCA2P51531 1590 aa25.63■■□□□ 1.69
RNF40-212ENST00000602784 PEG3Q9GZU2 1588 aa25.6■■□□□ 1.69
RNF40-212ENST00000602784 HMGXB3Q12766 1538 aa25.49■■□□□ 1.67
RNF40-212ENST00000602784 RSF1Q96T23 1441 aaPredicted RBP25.48■■□□□ 1.67
RNF40-212ENST00000602784 BAZ1BQ9UIG0 1483 aaKnown RBP25.42■■□□□ 1.66
RNF40-212ENST00000602784 WIZO95785 1651 aa25.38■■□□□ 1.65
RNF40-212ENST00000602784 TOP2AP11388 1531 aaKnown RBP25.16■■□□□ 1.62
RNF40-212ENST00000602784 SUPT5HO00267 1087 aaKnown RBP24.94■■□□□ 1.58
RNF40-212ENST00000602784 LAMC3Q9Y6N6 1575 aa24.88■■□□□ 1.57
RNF40-212ENST00000602784 CADPSQ9ULU8 1353 aa24.87■■□□□ 1.57
RNF40-212ENST00000602784 CCDC88BA6NC98 1476 aa24.87■■□□□ 1.57
RNF40-212ENST00000602784 NESP48681 1621 aa24.86■■□□□ 1.57
RNF40-212ENST00000602784 CFTRP13569 1480 aa24.77■■□□□ 1.56
RNF40-212ENST00000602784 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
RNF40-212ENST00000602784 ERCC6Q03468 1493 aa24.7■■□□□ 1.55
RNF40-212ENST00000602784 FANCD2Q9BXW9 1451 aa24.56■■□□□ 1.52
RNF40-212ENST00000602784 KIF21AQ7Z4S6 1674 aa24.56■■□□□ 1.52
RNF40-212ENST00000602784 PRDM2Q13029 1718 aa24.55■■□□□ 1.52
RNF40-212ENST00000602784 CEP164Q9UPV0 1460 aa24.51■■□□□ 1.51
RNF40-212ENST00000602784 THOC2Q8NI27 1593 aaKnown RBP24.45■■□□□ 1.5
RNF40-212ENST00000602784 MRC2Q9UBG0 1479 aa24.43■■□□□ 1.5
RNF40-212ENST00000602784 CUX2O14529 1486 aa24.41■■□□□ 1.5
RNF40-212ENST00000602784 WDR62O43379 1518 aa24.35■■□□□ 1.49
RNF40-212ENST00000602784 URB2Q14146 1524 aaKnown RBP24.29■■□□□ 1.48
RNF40-212ENST00000602784 ABCC8Q09428 1581 aa24.25■■□□□ 1.47
RNF40-212ENST00000602784 TOPBP1Q92547 1522 aa24.19■■□□□ 1.46
RNF40-212ENST00000602784 DNMBPQ6XZF7 1577 aa24.18■■□□□ 1.46
RNF40-212ENST00000602784 CUX1P39880 1505 aa24.08■■□□□ 1.45
RNF40-212ENST00000602784 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
RNF40-212ENST00000602784 IFT140Q96RY7 1462 aa24■■□□□ 1.43
RNF40-212ENST00000602784 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
RNF40-212ENST00000602784 FGD5Q6ZNL6 1462 aa23.95■■□□□ 1.42
RNF40-212ENST00000602784 TOP2BQ02880 1626 aa23.94■■□□□ 1.42
RNF40-212ENST00000602784 SOGA1O94964 1423 aa23.93■■□□□ 1.42
RNF40-212ENST00000602784 BIVM-ERCC5R4GMW8 1640 aa23.92■■□□□ 1.42
RNF40-212ENST00000602784 TARBP1Q13395 1621 aaKnown RBP23.91■■□□□ 1.42
RNF40-212ENST00000602784 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
RNF40-212ENST00000602784 RAD54L2Q9Y4B4 1467 aa23.87■■□□□ 1.41
RNF40-212ENST00000602784 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
RNF40-212ENST00000602784 WDR97A6NE52 1622 aa23.77■■□□□ 1.4
RNF40-212ENST00000602784 ABCA10Q8WWZ4 1543 aa23.77■■□□□ 1.4
RNF40-212ENST00000602784 EIF4G3O43432 1585 aaKnown RBP23.74■■□□□ 1.39
RNF40-212ENST00000602784 TDRD9Q8NDG6 1382 aaKnown RBP23.74■■□□□ 1.39
RNF40-212ENST00000602784 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.39
RNF40-212ENST00000602784 GAPVD1Q14C86 1478 aa23.64■■□□□ 1.38
RNF40-212ENST00000602784 ABCA5Q8WWZ7 1642 aa23.62■■□□□ 1.37
RNF40-212ENST00000602784 GRIN2BQ13224 1484 aa23.62■■□□□ 1.37
RNF40-212ENST00000602784 TRIM41Q8WV44 630 aa23.6■■□□□ 1.37
RNF40-212ENST00000602784 MAGI1Q96QZ7 1491 aaPredicted RBP23.54■■□□□ 1.36
RNF40-212ENST00000602784 PBRM1Q86U86 1689 aa23.52■■□□□ 1.36
RNF40-212ENST00000602784 KIF27Q86VH2 1401 aa23.51■■□□□ 1.35
RNF40-212ENST00000602784 SNAPC4Q5SXM2 1469 aa23.51■■□□□ 1.35
RNF40-212ENST00000602784 ERICH3Q5RHP9 1530 aa23.49■■□□□ 1.35
RNF40-212ENST00000602784 OSCARQ8IYS5 282 aa23.46■■□□□ 1.35
RNF40-212ENST00000602784 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.34
RNF40-212ENST00000602784 SYNJ2O15056 1496 aa23.44■■□□□ 1.34
RNF40-212ENST00000602784 DNAJC5Q9H3Z4 198 aa23.44■■□□□ 1.34
RNF40-212ENST00000602784 CHMP7Q8WUX9 453 aaPredicted RBP23.41■■□□□ 1.34
RNF40-212ENST00000602784 IGF1RP08069 1367 aa23.4■■□□□ 1.34
RNF40-212ENST00000602784 FBLN2P98095 1184 aa23.4■■□□□ 1.34
RNF40-212ENST00000602784 FHAD1B1AJZ9 1412 aa23.39■■□□□ 1.33
RNF40-212ENST00000602784 CHD1O14646 1710 aa23.39■■□□□ 1.33
RNF40-212ENST00000602784 ADAMTS12P58397 1594 aa23.37■■□□□ 1.33
RNF40-212ENST00000602784 RUSC2Q8N2Y8 1516 aa23.31■■□□□ 1.32
RNF40-212ENST00000602784 CUL7Q14999 1698 aa23.3■■□□□ 1.32
RNF40-212ENST00000602784 GRIN2AQ12879 1464 aa23.3■■□□□ 1.32
RNF40-212ENST00000602784 CARMIL1Q5VZK9 1371 aa23.26■■□□□ 1.31
RNF40-212ENST00000602784 EEA1Q15075 1411 aa23.23■■□□□ 1.31
RNF40-212ENST00000602784 NUP160Q12769 1436 aa23.21■■□□□ 1.31
RNF40-212ENST00000602784 CLASP1Q7Z460 1538 aa23.18■■□□□ 1.3
RNF40-212ENST00000602784 CSRNP3Q8WYN3 585 aa23.15■■□□□ 1.3
RNF40-212ENST00000602784 CEP170Q5SW79 1584 aa23.14■■□□□ 1.3
RNF40-212ENST00000602784 RAPGEF2Q9Y4G8 1499 aa23.13■■□□□ 1.29
RNF40-212ENST00000602784 PRXQ9BXM0 1461 aa23.11■■□□□ 1.29
RNF40-212ENST00000602784 KIAA0586Q9BVV6 1533 aa23.05■■□□□ 1.28
RNF40-212ENST00000602784 FAM9AQ8IZU1 332 aaPredicted RBP23.03■■□□□ 1.28
RNF40-212ENST00000602784 ARHGEF11O15085 1522 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms