Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 FAM178B-202ENST00000470789 722 ntTSL 1 (best)15.19■□□□□ 0.023e-6■■□□□ 13.7
U2AF1Q01081 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.794e-10■■□□□ 13.7
U2AF1Q01081 SAMD5-202ENST00000566741 393 ntTSL 37.32□□□□□ -1.241e-6■■□□□ 13.7
U2AF1Q01081 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.38□□□□□ -1.711e-6■■□□□ 13.7
U2AF1Q01081 AL033504.1-202ENST00000432506 406 ntTSL 23.64□□□□□ -1.831e-6■■□□□ 13.7
U2AF1Q01081 RSRP1-208ENST00000561867 477 ntAPPRIS ALT2 TSL 322.85■■□□□ 1.253e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-219ENST00000568701 629 ntAPPRIS ALT2 TSL 422.85■■□□□ 1.253e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.23e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.923e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-217ENST00000568254 2013 ntTSL 1 (best)20.69■□□□□ 0.93e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-220ENST00000568996 480 ntAPPRIS ALT2 TSL 320.53■□□□□ 0.883e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-216ENST00000568212 570 ntTSL 418.18■□□□□ 0.53e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-204ENST00000473314 3034 ntTSL 217.96■□□□□ 0.473e-27■■□□□ 13.7
U2AF1Q01081 RSRP1-207ENST00000498238 2941 ntTSL 216.18■□□□□ 0.183e-27■■□□□ 13.7
U2AF1Q01081 IST1-210ENST00000537571 603 ntTSL 27.4□□□□□ -1.221e-8■■□□□ 13.7
U2AF1Q01081 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.554e-7■■□□□ 13.7
U2AF1Q01081 TFRC-209ENST00000464368 569 ntTSL 413.13□□□□□ -0.313e-18■■□□□ 13.7
U2AF1Q01081 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.297e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-223ENST00000494445 629 ntTSL 211.96□□□□□ -0.497e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)9.16□□□□□ -0.947e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)8.99□□□□□ -0.977e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC8.47□□□□□ -1.057e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-225ENST00000496382 460 ntTSL 1 (best)8.45□□□□□ -1.067e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-204ENST00000429589 1005 ntTSL 58.07□□□□□ -1.127e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-202ENST00000425053 1977 ntTSL 57.35□□□□□ -1.237e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-222ENST00000492144 993 ntTSL 27.03□□□□□ -1.287e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-216ENST00000468362 1356 ntTSL 26.77□□□□□ -1.337e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-226ENST00000497177 849 ntTSL 56.39□□□□□ -1.397e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-209ENST00000461021 575 ntTSL 26.19□□□□□ -1.427e-32■■□□□ 13.7
U2AF1Q01081 EIF4A2-219ENST00000485101 5327 ntTSL 55.42□□□□□ -1.547e-32■■□□□ 13.7
U2AF1Q01081 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.613e-7■■□□□ 13.7
U2AF1Q01081 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.541e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.691e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-207ENST00000463571 1030 ntTSL 524.67■■□□□ 1.541e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.471e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-205ENST00000449603 682 ntTSL 323.14■■□□□ 1.291e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC22.4■■□□□ 1.181e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-211ENST00000495518 588 ntTSL 221.61■■□□□ 1.051e-10■■□□□ 13.6
U2AF1Q01081 SLC22A18-204ENST00000441077 831 ntTSL 520.06■□□□□ 0.81e-10■■□□□ 13.6
U2AF1Q01081 HMGA2-207ENST00000537275 1508 ntTSL 1 (best)32.36■■■□□ 2.778e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC32.36■■■□□ 2.778e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-208ENST00000537429 1527 ntTSL 1 (best)32.36■■■□□ 2.778e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC31■■■□□ 2.558e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC29.85■■■□□ 2.378e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC29.31■■■□□ 2.288e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC29.23■■■□□ 2.278e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-211ENST00000545998 1584 ntTSL 1 (best)27.39■■□□□ 1.978e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.618e-8■■□□□ 13.6
U2AF1Q01081 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.48e-8■■□□□ 13.6
U2AF1Q01081 ANKRD10-203ENST00000460846 535 ntTSL 317.27■□□□□ 0.361e-14■■□□□ 13.6
U2AF1Q01081 HMGA2-209ENST00000539662 485 ntTSL 314.38□□□□□ -0.118e-8■■□□□ 13.6
U2AF1Q01081 ANKRD10-204ENST00000463156 395 ntTSL 310.38□□□□□ -0.751e-14■■□□□ 13.6
U2AF1Q01081 ANKRD10-205ENST00000464579 128 ntTSL 35.33□□□□□ -1.561e-14■■□□□ 13.6
U2AF1Q01081 FNDC3B-202ENST00000415807 5083 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.054e-10■■□□□ 13.6
U2AF1Q01081 FNDC3B-201ENST00000336824 7904 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.474e-10■■□□□ 13.6
U2AF1Q01081 GTPBP2-207ENST00000459959 721 ntTSL 210.14□□□□□ -0.794e-10■■□□□ 13.6
U2AF1Q01081 MAT2A-206ENST00000490878 565 ntTSL 33.52□□□□□ -1.852e-9■■□□□ 13.6
U2AF1Q01081 DNAJC11-204ENST00000451196 1357 ntTSL 1 (best)26.75■■□□□ 1.875e-7■■□□□ 13.6
U2AF1Q01081 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC25.89■■□□□ 1.745e-7■■□□□ 13.6
U2AF1Q01081 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.35e-7■■□□□ 13.6
U2AF1Q01081 DNAJC11-210ENST00000473993 755 ntTSL 516.6■□□□□ 0.255e-7■■□□□ 13.6
U2AF1Q01081 DNAJC11-203ENST00000426784 975 ntTSL 310□□□□□ -0.815e-7■■□□□ 13.6
U2AF1Q01081 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.681e-7■■□□□ 13.6
U2AF1Q01081 DDB1-217ENST00000540166 3906 ntTSL 210.65□□□□□ -0.71e-7■■□□□ 13.6
U2AF1Q01081 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.132e-11■■□□□ 13.6
U2AF1Q01081 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.49□□□□□ -1.212e-11■■□□□ 13.6
U2AF1Q01081 ASNS-211ENST00000451771 562 ntTSL 225.34■■□□□ 1.651e-13■■□□□ 13.6
U2AF1Q01081 ASNS-204ENST00000414884 584 ntTSL 225.29■■□□□ 1.641e-13■■□□□ 13.6
U2AF1Q01081 AC079781.5-203ENST00000641315 2059 nt24.58■■□□□ 1.532e-11■■□□□ 13.6
U2AF1Q01081 ASNS-208ENST00000442734 828 ntTSL 221.21■□□□□ 0.991e-13■■□□□ 13.6
U2AF1Q01081 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.862e-11■■□□□ 13.6
U2AF1Q01081 ASNS-212ENST00000453600 573 ntTSL 319.45■□□□□ 0.71e-13■■□□□ 13.6
U2AF1Q01081 ASNS-202ENST00000394308 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.242e-11■■□□□ 13.6
U2AF1Q01081 ASNS-205ENST00000422745 1865 ntTSL 5 BASIC13.36□□□□□ -0.272e-11■■□□□ 13.6
U2AF1Q01081 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC9.87□□□□□ -0.832e-11■■□□□ 13.6
U2AF1Q01081 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.82□□□□□ -1.162e-11■■□□□ 13.6
U2AF1Q01081 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC27.8■■■□□ 2.043e-14■■□□□ 13.6
U2AF1Q01081 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.563e-14■■□□□ 13.6
U2AF1Q01081 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC23.01■■□□□ 1.273e-14■■□□□ 13.6
U2AF1Q01081 SCARB1-205ENST00000538291 5527 ntTSL 521.35■■□□□ 1.013e-14■■□□□ 13.6
U2AF1Q01081 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC20.65■□□□□ 0.93e-14■■□□□ 13.6
U2AF1Q01081 SCARB1-209ENST00000545305 851 ntTSL 218.31■□□□□ 0.523e-14■■□□□ 13.6
U2AF1Q01081 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.094e-9■■□□□ 13.6
U2AF1Q01081 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.584e-9■■□□□ 13.6
U2AF1Q01081 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC24.33■■□□□ 1.494e-9■■□□□ 13.6
U2AF1Q01081 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.974e-9■■□□□ 13.6
U2AF1Q01081 CD55-211ENST00000635614 1145 ntTSL 513.85□□□□□ -0.194e-9■■□□□ 13.6
U2AF1Q01081 CD55-210ENST00000634386 951 ntTSL 56.35□□□□□ -1.394e-9■■□□□ 13.6
U2AF1Q01081 CD55-208ENST00000476590 2163 ntTSL 1 (best)4.75□□□□□ -1.654e-9■■□□□ 13.6
U2AF1Q01081 CD55-207ENST00000465534 1480 ntTSL 1 (best)3.48□□□□□ -1.854e-9■■□□□ 13.6
U2AF1Q01081 SURF4-204ENST00000465565 400 ntTSL 326.63■■□□□ 1.854e-13■■□□□ 13.5
U2AF1Q01081 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC24.4■■□□□ 1.54e-13■■□□□ 13.5
U2AF1Q01081 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC21.24■□□□□ 0.994e-13■■□□□ 13.5
U2AF1Q01081 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.98■□□□□ 0.954e-13■■□□□ 13.5
U2AF1Q01081 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC20.78■□□□□ 0.924e-13■■□□□ 13.5
U2AF1Q01081 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.874e-13■■□□□ 13.5
U2AF1Q01081 SURF4-203ENST00000371991 715 ntTSL 3 BASIC17.89■□□□□ 0.454e-13■■□□□ 13.5
U2AF1Q01081 SURF4-205ENST00000467910 693 ntTSL 517.52■□□□□ 0.44e-13■■□□□ 13.5
U2AF1Q01081 ELL2-205ENST00000508757 468 ntTSL 46.4□□□□□ -1.388e-7■■□□□ 13.5
U2AF1Q01081 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC26.59■■□□□ 1.851e-7■■□□□ 13.5
Retrieved 100 of 10,096 protein–RNA pairs in 60.3 ms