RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 NISCHQ9Y2I1 1504 aa49.25■■■■■ 5.47
HMGA2-211ENST00000545998 CCDC180Q9P1Z9 1646 aa43.65■■■■■ 4.58
HMGA2-211ENST00000545998 ABCC9O60706 1549 aa42.36■■■■■ 4.37
HMGA2-211ENST00000545998 ZCCHC6Q5VYS8 1495 aaKnown RBP41.11■■■■■ 4.17
HMGA2-211ENST00000545998 NACADO15069 1562 aa40.95■■■■■ 4.15
HMGA2-211ENST00000545998 DCAF8L2P0C7V8 631 aa40.95■■■■■ 4.15
HMGA2-211ENST00000545998 RB1CC1Q8TDY2 1594 aa40.91■■■■■ 4.14
HMGA2-211ENST00000545998 MYO15BQ96JP2 1530 aa40.83■■■■■ 4.13
HMGA2-211ENST00000545998 DCAF1Q9Y4B6 1507 aa40.78■■■■■ 4.12
HMGA2-211ENST00000545998 UNC13AQ9UPW8 1703 aa40.05■■■■■ 4
HMGA2-211ENST00000545998 SCRIBQ14160 1630 aa39.85■■■■□ 3.97
HMGA2-211ENST00000545998 BICRAQ9NZM4 1560 aa39.69■■■■□ 3.94
HMGA2-211ENST00000545998 PABPN1Q86U42 306 aaKnown RBP eCLIP39.63■■■■□ 3.93
HMGA2-211ENST00000545998 SHROOM4Q9ULL8 1493 aa39.27■■■■□ 3.88
HMGA2-211ENST00000545998 EIF4G1Q04637 1599 aaKnown RBP38.59■■■■□ 3.77
HMGA2-211ENST00000545998 DNAJC5BQ9UF47 199 aa38.58■■■■□ 3.77
HMGA2-211ENST00000545998 CC2D2AQ9P2K1 1620 aa38.36■■■■□ 3.73
HMGA2-211ENST00000545998 CECR2Q9BXF3 1484 aa38.33■■■■□ 3.73
HMGA2-211ENST00000545998 SMARCA4P51532 1647 aa38.16■■■■□ 3.7
HMGA2-211ENST00000545998 BAZ1AQ9NRL2 1556 aaPredicted RBP38.15■■■■□ 3.7
HMGA2-211ENST00000545998 MROH2BQ7Z745 1585 aa37.97■■■■□ 3.67
HMGA2-211ENST00000545998 ATAD2BQ9ULI0 1458 aa37.85■■■■□ 3.65
HMGA2-211ENST00000545998 SMARCA2P51531 1590 aa37.81■■■■□ 3.64
HMGA2-211ENST00000545998 PEG3Q9GZU2 1588 aa37.8■■■■□ 3.64
HMGA2-211ENST00000545998 NCAPD3P42695 1498 aa37.77■■■■□ 3.64
HMGA2-211ENST00000545998 RSF1Q96T23 1441 aaPredicted RBP37.65■■■■□ 3.62
HMGA2-211ENST00000545998 HMGXB3Q12766 1538 aa37.63■■■■□ 3.61
HMGA2-211ENST00000545998 WIZO95785 1651 aa37.59■■■■□ 3.61
HMGA2-211ENST00000545998 BAZ1BQ9UIG0 1483 aaKnown RBP37.54■■■■□ 3.6
HMGA2-211ENST00000545998 TOP2AP11388 1531 aaKnown RBP37.2■■■■□ 3.55
HMGA2-211ENST00000545998 SUPT5HO00267 1087 aaKnown RBP36.91■■■■□ 3.5
HMGA2-211ENST00000545998 NESP48681 1621 aa36.77■■■■□ 3.48
HMGA2-211ENST00000545998 CCDC88BA6NC98 1476 aa36.76■■■■□ 3.47
HMGA2-211ENST00000545998 LAMC3Q9Y6N6 1575 aa36.73■■■■□ 3.47
HMGA2-211ENST00000545998 CADPSQ9ULU8 1353 aa36.68■■■■□ 3.46
HMGA2-211ENST00000545998 CFTRP13569 1480 aa36.55■■■■□ 3.44
HMGA2-211ENST00000545998 ERCC6Q03468 1493 aa36.46■■■■□ 3.43
HMGA2-211ENST00000545998 PDS5BQ9NTI5 1447 aa36.45■■■■□ 3.43
HMGA2-211ENST00000545998 KIF21AQ7Z4S6 1674 aa36.37■■■■□ 3.41
HMGA2-211ENST00000545998 PRDM2Q13029 1718 aa36.36■■■■□ 3.41
HMGA2-211ENST00000545998 FANCD2Q9BXW9 1451 aa36.27■■■■□ 3.4
HMGA2-211ENST00000545998 CEP164Q9UPV0 1460 aa36.18■■■■□ 3.38
HMGA2-211ENST00000545998 THOC2Q8NI27 1593 aaKnown RBP36.16■■■■□ 3.38
HMGA2-211ENST00000545998 MRC2Q9UBG0 1479 aa36.07■■■■□ 3.36
HMGA2-211ENST00000545998 CUX2O14529 1486 aa35.97■■■■□ 3.35
HMGA2-211ENST00000545998 WDR62O43379 1518 aa35.95■■■■□ 3.35
HMGA2-211ENST00000545998 URB2Q14146 1524 aaKnown RBP35.9■■■■□ 3.34
HMGA2-211ENST00000545998 TOPBP1Q92547 1522 aa35.74■■■■□ 3.31
HMGA2-211ENST00000545998 ABCC8Q09428 1581 aa35.74■■■■□ 3.31
HMGA2-211ENST00000545998 DNMBPQ6XZF7 1577 aa35.73■■■■□ 3.31
HMGA2-211ENST00000545998 CUX1P39880 1505 aa35.6■■■■□ 3.29
HMGA2-211ENST00000545998 WRNQ14191 1432 aaPredicted RBP eCLIP35.47■■■■□ 3.27
HMGA2-211ENST00000545998 POLA1P09884 1462 aaPredicted RBP35.46■■■■□ 3.27
HMGA2-211ENST00000545998 FGD5Q6ZNL6 1462 aa35.41■■■■□ 3.26
HMGA2-211ENST00000545998 IFT140Q96RY7 1462 aa35.41■■■■□ 3.26
HMGA2-211ENST00000545998 SYNJ1O43426 1573 aa35.41■■■■□ 3.26
HMGA2-211ENST00000545998 BIVM-ERCC5R4GMW8 1640 aa35.4■■■■□ 3.26
HMGA2-211ENST00000545998 TOP2BQ02880 1626 aa35.39■■■■□ 3.26
HMGA2-211ENST00000545998 TARBP1Q13395 1621 aaKnown RBP35.35■■■■□ 3.25
HMGA2-211ENST00000545998 SOGA1O94964 1423 aa35.3■■■■□ 3.24
HMGA2-211ENST00000545998 RAD54L2Q9Y4B4 1467 aa35.29■■■■□ 3.24
HMGA2-211ENST00000545998 ZNF608Q9ULD9 1512 aaPredicted RBP35.24■■■■□ 3.23
HMGA2-211ENST00000545998 WDR97A6NE52 1622 aa35.14■■■■□ 3.22
HMGA2-211ENST00000545998 EIF4G3O43432 1585 aaKnown RBP35.13■■■■□ 3.21
HMGA2-211ENST00000545998 ABCA10Q8WWZ4 1543 aa35.09■■■■□ 3.21
HMGA2-211ENST00000545998 AQRO60306 1485 aaKnown RBP eCLIP35.07■■■■□ 3.23e-8■■□□□ 13.1
HMGA2-211ENST00000545998 TDRD9Q8NDG6 1382 aaKnown RBP35.06■■■■□ 3.2
HMGA2-211ENST00000545998 ABCA5Q8WWZ7 1642 aa34.95■■■■□ 3.18
HMGA2-211ENST00000545998 GAPVD1Q14C86 1478 aa34.9■■■■□ 3.18
HMGA2-211ENST00000545998 TRIM41Q8WV44 630 aa34.85■■■■□ 3.17
HMGA2-211ENST00000545998 GRIN2BQ13224 1484 aa34.85■■■■□ 3.17
HMGA2-211ENST00000545998 PBRM1Q86U86 1689 aa34.85■■■■□ 3.17
HMGA2-211ENST00000545998 SNAPC4Q5SXM2 1469 aa34.76■■■■□ 3.15
HMGA2-211ENST00000545998 MAGI1Q96QZ7 1491 aaPredicted RBP34.73■■■■□ 3.15
HMGA2-211ENST00000545998 KIF27Q86VH2 1401 aa34.7■■■■□ 3.15
HMGA2-211ENST00000545998 ERICH3Q5RHP9 1530 aa34.69■■■■□ 3.14
HMGA2-211ENST00000545998 CHIC1Q5VXU3 224 aa34.67■■■■□ 3.14
HMGA2-211ENST00000545998 CHD1O14646 1710 aa34.63■■■■□ 3.13
HMGA2-211ENST00000545998 SYNJ2O15056 1496 aa34.59■■■■□ 3.13
HMGA2-211ENST00000545998 ADAMTS12P58397 1594 aa34.58■■■■□ 3.13
HMGA2-211ENST00000545998 FBLN2P98095 1184 aa34.54■■■■□ 3.12
HMGA2-211ENST00000545998 IGF1RP08069 1367 aa34.54■■■■□ 3.12
HMGA2-211ENST00000545998 OSCARQ8IYS5 282 aa34.53■■■■□ 3.12
HMGA2-211ENST00000545998 RUSC2Q8N2Y8 1516 aa34.52■■■■□ 3.12
HMGA2-211ENST00000545998 FHAD1B1AJZ9 1412 aa34.51■■■■□ 3.12
HMGA2-211ENST00000545998 CHMP7Q8WUX9 453 aaPredicted RBP34.51■■■■□ 3.12
HMGA2-211ENST00000545998 DNAJC5Q9H3Z4 198 aa34.46■■■■□ 3.11
HMGA2-211ENST00000545998 CUL7Q14999 1698 aa34.45■■■■□ 3.1
HMGA2-211ENST00000545998 GRIN2AQ12879 1464 aa34.41■■■■□ 3.1
HMGA2-211ENST00000545998 CARMIL1Q5VZK9 1371 aa34.33■■■■□ 3.09
HMGA2-211ENST00000545998 EEA1Q15075 1411 aa34.26■■■■□ 3.07
HMGA2-211ENST00000545998 CLASP1Q7Z460 1538 aa34.25■■■■□ 3.07
HMGA2-211ENST00000545998 NUP160Q12769 1436 aa34.25■■■■□ 3.07
HMGA2-211ENST00000545998 CEP170Q5SW79 1584 aa34.24■■■■□ 3.07
HMGA2-211ENST00000545998 RAPGEF2Q9Y4G8 1499 aa34.16■■■■□ 3.06
HMGA2-211ENST00000545998 CSRNP3Q8WYN3 585 aa34.16■■■■□ 3.06
HMGA2-211ENST00000545998 PRXQ9BXM0 1461 aa34.15■■■■□ 3.06
HMGA2-211ENST00000545998 FAM9AQ8IZU1 332 aaPredicted RBP34.11■■■■□ 3.05
HMGA2-211ENST00000545998 ARHGEF11O15085 1522 aa34■■■■□ 3.03
HMGA2-211ENST00000545998 KIAA0586Q9BVV6 1533 aa34■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms