RNA–Protein interactions for RNA: ENST00000536545.5

HMGA2-206, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best) BASIC

Gene HMGA2, Length 1,788 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-206ENST00000536545 NISCHQ9Y2I1 1504 aa50.56■■■■■ 5.68
HMGA2-206ENST00000536545 CCDC180Q9P1Z9 1646 aa43.88■■■■■ 4.62
HMGA2-206ENST00000536545 ZCCHC6Q5VYS8 1495 aaKnown RBP42.62■■■■■ 4.41
HMGA2-206ENST00000536545 DCAF1Q9Y4B6 1507 aa41.81■■■■■ 4.28
HMGA2-206ENST00000536545 SHROOM4Q9ULL8 1493 aa41.56■■■■■ 4.24
HMGA2-206ENST00000536545 DCAF8L2P0C7V8 631 aa41.42■■■■■ 4.22
HMGA2-206ENST00000536545 MYO15BQ96JP2 1530 aa41.13■■■■■ 4.18
HMGA2-206ENST00000536545 ABCC9O60706 1549 aa41.02■■■■■ 4.16
HMGA2-206ENST00000536545 NACADO15069 1562 aa40.72■■■■■ 4.11
HMGA2-206ENST00000536545 SCRIBQ14160 1630 aa40.44■■■■■ 4.06
HMGA2-206ENST00000536545 RB1CC1Q8TDY2 1594 aa40.24■■■■■ 4.03
HMGA2-206ENST00000536545 SUPT5HO00267 1087 aaKnown RBP40.15■■■■■ 4.02
HMGA2-206ENST00000536545 UNC13AQ9UPW8 1703 aa39.53■■■■□ 3.92
HMGA2-206ENST00000536545 RSF1Q96T23 1441 aaPredicted RBP39.41■■■■□ 3.9
HMGA2-206ENST00000536545 CECR2Q9BXF3 1484 aa39.27■■■■□ 3.88
HMGA2-206ENST00000536545 MROH2BQ7Z745 1585 aa39.11■■■■□ 3.85
HMGA2-206ENST00000536545 BICRAQ9NZM4 1560 aa39.11■■■■□ 3.85
HMGA2-206ENST00000536545 BAZ1AQ9NRL2 1556 aaPredicted RBP38.99■■■■□ 3.83
HMGA2-206ENST00000536545 WIZO95785 1651 aa38.82■■■■□ 3.8
HMGA2-206ENST00000536545 SMARCA4P51532 1647 aa38.79■■■■□ 3.8
HMGA2-206ENST00000536545 PABPN1Q86U42 306 aaKnown RBP eCLIP38.75■■■■□ 3.79
HMGA2-206ENST00000536545 CHIC1Q5VXU3 224 aa38.73■■■■□ 3.79
HMGA2-206ENST00000536545 TOP2AP11388 1531 aaKnown RBP38.43■■■■□ 3.74
HMGA2-206ENST00000536545 PEG3Q9GZU2 1588 aa38.3■■■■□ 3.72
HMGA2-206ENST00000536545 SMARCA2P51531 1590 aa38.09■■■■□ 3.69
HMGA2-206ENST00000536545 EIF4G1Q04637 1599 aaKnown RBP38.07■■■■□ 3.68
HMGA2-206ENST00000536545 CCDC88BA6NC98 1476 aa38.01■■■■□ 3.68
HMGA2-206ENST00000536545 ATAD2BQ9ULI0 1458 aa38.01■■■■□ 3.67
HMGA2-206ENST00000536545 BAZ1BQ9UIG0 1483 aaKnown RBP37.81■■■■□ 3.64
HMGA2-206ENST00000536545 TRIM41Q8WV44 630 aa37.7■■■■□ 3.63
HMGA2-206ENST00000536545 HMGXB3Q12766 1538 aa37.61■■■■□ 3.61
HMGA2-206ENST00000536545 NCAPD3P42695 1498 aa37.57■■■■□ 3.61
HMGA2-206ENST00000536545 ABCC8Q09428 1581 aa37.41■■■■□ 3.58
HMGA2-206ENST00000536545 LOC105371045A0A1W2PR82 267 aa37.25■■■■□ 3.55
HMGA2-206ENST00000536545 CC2D2AQ9P2K1 1620 aa37.16■■■■□ 3.54
HMGA2-206ENST00000536545 WRNQ14191 1432 aaPredicted RBP eCLIP37.06■■■■□ 3.52
HMGA2-206ENST00000536545 FAM9AQ8IZU1 332 aaPredicted RBP37.04■■■■□ 3.52
HMGA2-206ENST00000536545 SYNJ1O43426 1573 aa36.96■■■■□ 3.51
HMGA2-206ENST00000536545 CFTRP13569 1480 aa36.89■■■■□ 3.5
HMGA2-206ENST00000536545 SOGA1O94964 1423 aa36.78■■■■□ 3.48
HMGA2-206ENST00000536545 PRDM2Q13029 1718 aa36.77■■■■□ 3.48
HMGA2-206ENST00000536545 EEA1Q15075 1411 aa36.77■■■■□ 3.48
HMGA2-206ENST00000536545 TOP2BQ02880 1626 aa36.74■■■■□ 3.47
HMGA2-206ENST00000536545 BIVM-ERCC5R4GMW8 1640 aa36.71■■■■□ 3.47
HMGA2-206ENST00000536545 CADPSQ9ULU8 1353 aa36.63■■■■□ 3.45
HMGA2-206ENST00000536545 RUSC2Q8N2Y8 1516 aa36.62■■■■□ 3.45
HMGA2-206ENST00000536545 CUX1P39880 1505 aa36.55■■■■□ 3.44
HMGA2-206ENST00000536545 EHMT2Q96KQ7 1210 aa36.5■■■■□ 3.43
HMGA2-206ENST00000536545 CSRNP3Q8WYN3 585 aa36.45■■■■□ 3.43
HMGA2-206ENST00000536545 KIF21BO75037 1637 aa36.34■■■■□ 3.41
HMGA2-206ENST00000536545 GOLGA3Q08378 1498 aa36.31■■■■□ 3.4
HMGA2-206ENST00000536545 FANCD2Q9BXW9 1451 aa36.26■■■■□ 3.4
HMGA2-206ENST00000536545 CEP164Q9UPV0 1460 aa36.26■■■■□ 3.4
HMGA2-206ENST00000536545 TNIKQ9UKE5 1360 aa36.26■■■■□ 3.4
HMGA2-206ENST00000536545 LAMC3Q9Y6N6 1575 aa36.22■■■■□ 3.39
HMGA2-206ENST00000536545 NESP48681 1621 aa36.21■■■■□ 3.39
HMGA2-206ENST00000536545 CEP162Q5TB80 1403 aa36.15■■■■□ 3.38
HMGA2-206ENST00000536545 DNAJC5BQ9UF47 199 aa36.07■■■■□ 3.36
HMGA2-206ENST00000536545 KIF27Q86VH2 1401 aa36.06■■■■□ 3.36
HMGA2-206ENST00000536545 DNMBPQ6XZF7 1577 aa36.05■■■■□ 3.36
HMGA2-206ENST00000536545 FGD5Q6ZNL6 1462 aa36.04■■■■□ 3.36
HMGA2-206ENST00000536545 PCGF6Q9BYE7 350 aa36.02■■■■□ 3.36
HMGA2-206ENST00000536545 RAPGEF2Q9Y4G8 1499 aa36.02■■■■□ 3.36
HMGA2-206ENST00000536545 UBTFP17480 764 aaKnown RBP36■■■■□ 3.35
HMGA2-206ENST00000536545 PRXQ9BXM0 1461 aa35.99■■■■□ 3.35
HMGA2-206ENST00000536545 ERICH3Q5RHP9 1530 aa35.99■■■■□ 3.35
HMGA2-206ENST00000536545 TOPBP1Q92547 1522 aa35.94■■■■□ 3.34
HMGA2-206ENST00000536545 TRIM26Q12899 539 aaPredicted RBP35.9■■■■□ 3.34
HMGA2-206ENST00000536545 CUX2O14529 1486 aa35.88■■■■□ 3.33
HMGA2-206ENST00000536545 PDS5BQ9NTI5 1447 aa35.88■■■■□ 3.33
HMGA2-206ENST00000536545 URB2Q14146 1524 aaKnown RBP35.82■■■■□ 3.32
HMGA2-206ENST00000536545 POLA1P09884 1462 aaPredicted RBP35.81■■■■□ 3.32
HMGA2-206ENST00000536545 KIF21AQ7Z4S6 1674 aa35.79■■■■□ 3.32
HMGA2-206ENST00000536545 ABCA10Q8WWZ4 1543 aa35.74■■■■□ 3.31
HMGA2-206ENST00000536545 CLIP1P30622 1438 aa35.73■■■■□ 3.31
HMGA2-206ENST00000536545 IGF1RP08069 1367 aa35.69■■■■□ 3.3
HMGA2-206ENST00000536545 RAD54L2Q9Y4B4 1467 aa35.68■■■■□ 3.3
HMGA2-206ENST00000536545 WDR97A6NE52 1622 aa35.64■■■■□ 3.3
HMGA2-206ENST00000536545 VPS8Q8N3P4 1428 aa35.5■■■■□ 3.27
HMGA2-206ENST00000536545 CARMIL1Q5VZK9 1371 aa35.5■■■■□ 3.27
HMGA2-206ENST00000536545 ABCA5Q8WWZ7 1642 aa35.46■■■■□ 3.27
HMGA2-206ENST00000536545 PPARGC1BQ86YN6 1023 aaKnown RBP35.46■■■■□ 3.27
HMGA2-206ENST00000536545 MRC2Q9UBG0 1479 aa35.45■■■■□ 3.27
HMGA2-206ENST00000536545 HRCP23327 699 aa35.44■■■■□ 3.26
HMGA2-206ENST00000536545 CUL7Q14999 1698 aa35.43■■■■□ 3.26
HMGA2-206ENST00000536545 ARAP1Q96P48 1450 aa35.39■■■■□ 3.26
HMGA2-206ENST00000536545 TARBP1Q13395 1621 aaKnown RBP35.39■■■■□ 3.26
HMGA2-206ENST00000536545 RANGAP1P46060 587 aaPredicted RBP35.28■■■■□ 3.24
HMGA2-206ENST00000536545 WDR62O43379 1518 aa35.28■■■■□ 3.24
HMGA2-206ENST00000536545 GAPVD1Q14C86 1478 aa35.27■■■■□ 3.24
HMGA2-206ENST00000536545 ARHGAP35Q9NRY4 1499 aa35.27■■■■□ 3.24
HMGA2-206ENST00000536545 TDRD9Q8NDG6 1382 aaKnown RBP35.25■■■■□ 3.23
HMGA2-206ENST00000536545 CTTNBP2Q8WZ74 1663 aa35.11■■■■□ 3.21
HMGA2-206ENST00000536545 PBRM1Q86U86 1689 aa35.1■■■■□ 3.21
HMGA2-206ENST00000536545 THOC2Q8NI27 1593 aaKnown RBP35.09■■■■□ 3.21
HMGA2-206ENST00000536545 ERCC6Q03468 1493 aa35.09■■■■□ 3.21
HMGA2-206ENST00000536545 TTBK1Q5TCY1 1321 aaPredicted RBP35.09■■■■□ 3.21
HMGA2-206ENST00000536545 IFT140Q96RY7 1462 aa35.08■■■■□ 3.21
HMGA2-206ENST00000536545 APLP2Q06481 763 aa34.99■■■■□ 3.19
HMGA2-206ENST00000536545 EFCAB5A4FU69 1503 aa34.98■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms