RNA–Protein interactions for RNA: ENST00000354636.7

HMGA2-201, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best) BASIC

Gene HMGA2, Length 1,529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-201ENST00000354636 NISCHQ9Y2I1 1504 aa57.34■■■■■ 6.77
HMGA2-201ENST00000354636 CCDC180Q9P1Z9 1646 aa50.56■■■■■ 5.68
HMGA2-201ENST00000354636 ABCC9O60706 1549 aa48.66■■■■■ 5.38
HMGA2-201ENST00000354636 ZCCHC6Q5VYS8 1495 aaKnown RBP47.95■■■■■ 5.27
HMGA2-201ENST00000354636 DCAF8L2P0C7V8 631 aa47.55■■■■■ 5.2
HMGA2-201ENST00000354636 DCAF1Q9Y4B6 1507 aa47.48■■■■■ 5.19
HMGA2-201ENST00000354636 MYO15BQ96JP2 1530 aa47.36■■■■■ 5.17
HMGA2-201ENST00000354636 NACADO15069 1562 aa47.34■■■■■ 5.17
HMGA2-201ENST00000354636 RB1CC1Q8TDY2 1594 aa47.17■■■■■ 5.14
HMGA2-201ENST00000354636 SCRIBQ14160 1630 aa46.21■■■■■ 4.99
HMGA2-201ENST00000354636 UNC13AQ9UPW8 1703 aa46.15■■■■■ 4.98
HMGA2-201ENST00000354636 SHROOM4Q9ULL8 1493 aa45.82■■■■■ 4.93
HMGA2-201ENST00000354636 BICRAQ9NZM4 1560 aa45.75■■■■■ 4.91
HMGA2-201ENST00000354636 PABPN1Q86U42 306 aaKnown RBP eCLIP45.63■■■■■ 4.9
HMGA2-201ENST00000354636 CECR2Q9BXF3 1484 aa44.59■■■■■ 4.73
HMGA2-201ENST00000354636 EIF4G1Q04637 1599 aaKnown RBP44.46■■■■■ 4.71
HMGA2-201ENST00000354636 BAZ1AQ9NRL2 1556 aaPredicted RBP44.37■■■■■ 4.69
HMGA2-201ENST00000354636 SMARCA4P51532 1647 aa44.3■■■■■ 4.68
HMGA2-201ENST00000354636 MROH2BQ7Z745 1585 aa44.22■■■■■ 4.67
HMGA2-201ENST00000354636 CC2D2AQ9P2K1 1620 aa44.06■■■■■ 4.64
HMGA2-201ENST00000354636 RSF1Q96T23 1441 aaPredicted RBP44.03■■■■■ 4.64
HMGA2-201ENST00000354636 DNAJC5BQ9UF47 199 aa43.92■■■■■ 4.62
HMGA2-201ENST00000354636 PEG3Q9GZU2 1588 aa43.86■■■■■ 4.61
HMGA2-201ENST00000354636 ATAD2BQ9ULI0 1458 aa43.85■■■■■ 4.61
HMGA2-201ENST00000354636 SMARCA2P51531 1590 aa43.81■■■■■ 4.6
HMGA2-201ENST00000354636 WIZO95785 1651 aa43.78■■■■■ 4.6
HMGA2-201ENST00000354636 NCAPD3P42695 1498 aa43.69■■■■■ 4.59
HMGA2-201ENST00000354636 SUPT5HO00267 1087 aaKnown RBP43.56■■■■■ 4.56
HMGA2-201ENST00000354636 HMGXB3Q12766 1538 aa43.54■■■■■ 4.56
HMGA2-201ENST00000354636 BAZ1BQ9UIG0 1483 aaKnown RBP43.51■■■■■ 4.56
HMGA2-201ENST00000354636 TOP2AP11388 1531 aaKnown RBP43.35■■■■■ 4.53
HMGA2-201ENST00000354636 CCDC88BA6NC98 1476 aa42.86■■■■■ 4.45
HMGA2-201ENST00000354636 CADPSQ9ULU8 1353 aa42.47■■■■■ 4.39
HMGA2-201ENST00000354636 CFTRP13569 1480 aa42.4■■■■■ 4.38
HMGA2-201ENST00000354636 LAMC3Q9Y6N6 1575 aa42.39■■■■■ 4.38
HMGA2-201ENST00000354636 NESP48681 1621 aa42.38■■■■■ 4.37
HMGA2-201ENST00000354636 PRDM2Q13029 1718 aa42.12■■■■■ 4.33
HMGA2-201ENST00000354636 PDS5BQ9NTI5 1447 aa42.07■■■■■ 4.33
HMGA2-201ENST00000354636 FANCD2Q9BXW9 1451 aa41.97■■■■■ 4.31
HMGA2-201ENST00000354636 KIF21AQ7Z4S6 1674 aa41.89■■■■■ 4.3
HMGA2-201ENST00000354636 ERCC6Q03468 1493 aa41.84■■■■■ 4.29
HMGA2-201ENST00000354636 CEP164Q9UPV0 1460 aa41.82■■■■■ 4.29
HMGA2-201ENST00000354636 MRC2Q9UBG0 1479 aa41.58■■■■■ 4.25
HMGA2-201ENST00000354636 ABCC8Q09428 1581 aa41.56■■■■■ 4.24
HMGA2-201ENST00000354636 THOC2Q8NI27 1593 aaKnown RBP41.53■■■■■ 4.24
HMGA2-201ENST00000354636 URB2Q14146 1524 aaKnown RBP41.51■■■■■ 4.24
HMGA2-201ENST00000354636 WRNQ14191 1432 aaPredicted RBP eCLIP41.47■■■■■ 4.23
HMGA2-201ENST00000354636 WDR62O43379 1518 aa41.42■■■■■ 4.22
HMGA2-201ENST00000354636 CUX1P39880 1505 aa41.42■■■■■ 4.22
HMGA2-201ENST00000354636 DNMBPQ6XZF7 1577 aa41.41■■■■■ 4.22
HMGA2-201ENST00000354636 TOPBP1Q92547 1522 aa41.4■■■■■ 4.22
HMGA2-201ENST00000354636 SYNJ1O43426 1573 aa41.33■■■■■ 4.21
HMGA2-201ENST00000354636 TOP2BQ02880 1626 aa41.29■■■■■ 4.2
HMGA2-201ENST00000354636 BIVM-ERCC5R4GMW8 1640 aa41.28■■■■■ 4.2
HMGA2-201ENST00000354636 CHIC1Q5VXU3 224 aa41.19■■■■■ 4.18
HMGA2-201ENST00000354636 FGD5Q6ZNL6 1462 aa41.14■■■■■ 4.18
HMGA2-201ENST00000354636 POLA1P09884 1462 aaPredicted RBP41.11■■■■■ 4.17
HMGA2-201ENST00000354636 TRIM41Q8WV44 630 aa41.1■■■■■ 4.17
HMGA2-201ENST00000354636 CUX2O14529 1486 aa41.09■■■■■ 4.17
HMGA2-201ENST00000354636 SOGA1O94964 1423 aa40.96■■■■■ 4.15
HMGA2-201ENST00000354636 RAD54L2Q9Y4B4 1467 aa40.93■■■■■ 4.14
HMGA2-201ENST00000354636 IFT140Q96RY7 1462 aa40.9■■■■■ 4.14
HMGA2-201ENST00000354636 TARBP1Q13395 1621 aaKnown RBP40.89■■■■■ 4.14
HMGA2-201ENST00000354636 ABCA10Q8WWZ4 1543 aa40.79■■■■■ 4.12
HMGA2-201ENST00000354636 WDR97A6NE52 1622 aa40.75■■■■■ 4.11
HMGA2-201ENST00000354636 ZNF608Q9ULD9 1512 aaPredicted RBP40.68■■■■■ 4.1
HMGA2-201ENST00000354636 TDRD9Q8NDG6 1382 aaKnown RBP40.62■■■■■ 4.09
HMGA2-201ENST00000354636 AQRO60306 1485 aaKnown RBP eCLIP40.56■■■■■ 4.083e-8■■□□□ 13.1
HMGA2-201ENST00000354636 ABCA5Q8WWZ7 1642 aa40.54■■■■■ 4.08
HMGA2-201ENST00000354636 EIF4G3O43432 1585 aaKnown RBP40.53■■■■■ 4.08
HMGA2-201ENST00000354636 KIF27Q86VH2 1401 aa40.53■■■■■ 4.08
HMGA2-201ENST00000354636 GAPVD1Q14C86 1478 aa40.49■■■■■ 4.07
HMGA2-201ENST00000354636 RUSC2Q8N2Y8 1516 aa40.47■■■■■ 4.07
HMGA2-201ENST00000354636 GRIN2BQ13224 1484 aa40.36■■■■■ 4.05
HMGA2-201ENST00000354636 PBRM1Q86U86 1689 aa40.34■■■■■ 4.05
HMGA2-201ENST00000354636 EEA1Q15075 1411 aa40.34■■■■■ 4.05
HMGA2-201ENST00000354636 ERICH3Q5RHP9 1530 aa40.3■■■■■ 4.04
HMGA2-201ENST00000354636 IGF1RP08069 1367 aa40.29■■■■■ 4.04
HMGA2-201ENST00000354636 FAM9AQ8IZU1 332 aaPredicted RBP40.23■■■■■ 4.03
HMGA2-201ENST00000354636 SNAPC4Q5SXM2 1469 aa40.19■■■■■ 4.02
HMGA2-201ENST00000354636 CSRNP3Q8WYN3 585 aa40.18■■■■■ 4.02
HMGA2-201ENST00000354636 MAGI1Q96QZ7 1491 aaPredicted RBP40.17■■■■■ 4.02
HMGA2-201ENST00000354636 CUL7Q14999 1698 aa40.1■■■■■ 4.01
HMGA2-201ENST00000354636 ADAMTS12P58397 1594 aa40.07■■■■■ 4.01
HMGA2-201ENST00000354636 FHAD1B1AJZ9 1412 aa40.06■■■■■ 4
HMGA2-201ENST00000354636 CARMIL1Q5VZK9 1371 aa40.06■■■■■ 4
HMGA2-201ENST00000354636 SYNJ2O15056 1496 aa40■■■■□ 3.99
HMGA2-201ENST00000354636 PRXQ9BXM0 1461 aa40■■■■□ 3.99
HMGA2-201ENST00000354636 FBLN2P98095 1184 aa39.91■■■■□ 3.98
HMGA2-201ENST00000354636 CHMP7Q8WUX9 453 aaPredicted RBP39.91■■■■□ 3.98
HMGA2-201ENST00000354636 RAPGEF2Q9Y4G8 1499 aa39.91■■■■□ 3.98
HMGA2-201ENST00000354636 GRIN2AQ12879 1464 aa39.86■■■■□ 3.97
HMGA2-201ENST00000354636 CHD1O14646 1710 aa39.85■■■■□ 3.97
HMGA2-201ENST00000354636 KIF21BO75037 1637 aa39.85■■■■□ 3.97
HMGA2-201ENST00000354636 GOLGA3Q08378 1498 aa39.68■■■■□ 3.94
HMGA2-201ENST00000354636 NUP160Q12769 1436 aa39.65■■■■□ 3.94
HMGA2-201ENST00000354636 EHMT2Q96KQ7 1210 aa39.63■■■■□ 3.93
HMGA2-201ENST00000354636 CEP170Q5SW79 1584 aa39.63■■■■□ 3.93
HMGA2-201ENST00000354636 OSCARQ8IYS5 282 aa39.58■■■■□ 3.93
HMGA2-201ENST00000354636 LOC105371045A0A1W2PR82 267 aa39.52■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms