RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 NISCHQ9Y2I1 1504 aa26.22■■□□□ 1.79
HMGA2-209ENST00000539662 CCDC180Q9P1Z9 1646 aa23.27■■□□□ 1.32
HMGA2-209ENST00000539662 ABCC9O60706 1549 aa22.92■■□□□ 1.26
HMGA2-209ENST00000539662 DCAF8L2P0C7V8 631 aa21.96■■□□□ 1.11
HMGA2-209ENST00000539662 RB1CC1Q8TDY2 1594 aa21.92■■□□□ 1.1
HMGA2-209ENST00000539662 NACADO15069 1562 aa21.87■■□□□ 1.09
HMGA2-209ENST00000539662 ZCCHC6Q5VYS8 1495 aaKnown RBP21.83■■□□□ 1.08
HMGA2-209ENST00000539662 MYO15BQ96JP2 1530 aa21.69■■□□□ 1.06
HMGA2-209ENST00000539662 DCAF1Q9Y4B6 1507 aa21.62■■□□□ 1.05
HMGA2-209ENST00000539662 UNC13AQ9UPW8 1703 aa21.56■■□□□ 1.04
HMGA2-209ENST00000539662 PABPN1Q86U42 306 aaKnown RBP eCLIP21.44■■□□□ 1.02
HMGA2-209ENST00000539662 BICRAQ9NZM4 1560 aa21.37■■□□□ 1.01
HMGA2-209ENST00000539662 SCRIBQ14160 1630 aa21.33■■□□□ 1.01
HMGA2-209ENST00000539662 DNAJC5BQ9UF47 199 aa21.15■□□□□ 0.98
HMGA2-209ENST00000539662 SHROOM4Q9ULL8 1493 aa20.94■□□□□ 0.94
HMGA2-209ENST00000539662 EIF4G1Q04637 1599 aaKnown RBP20.76■□□□□ 0.91
HMGA2-209ENST00000539662 CC2D2AQ9P2K1 1620 aa20.71■□□□□ 0.91
HMGA2-209ENST00000539662 CECR2Q9BXF3 1484 aa20.54■□□□□ 0.88
HMGA2-209ENST00000539662 SMARCA4P51532 1647 aa20.37■□□□□ 0.85
HMGA2-209ENST00000539662 BAZ1AQ9NRL2 1556 aaPredicted RBP20.28■□□□□ 0.84
HMGA2-209ENST00000539662 MROH2BQ7Z745 1585 aa20.27■□□□□ 0.84
HMGA2-209ENST00000539662 ATAD2BQ9ULI0 1458 aa20.26■□□□□ 0.83
HMGA2-209ENST00000539662 NCAPD3P42695 1498 aa20.21■□□□□ 0.83
HMGA2-209ENST00000539662 SMARCA2P51531 1590 aa20.16■□□□□ 0.82
HMGA2-209ENST00000539662 PEG3Q9GZU2 1588 aa20.12■□□□□ 0.81
HMGA2-209ENST00000539662 HMGXB3Q12766 1538 aa20.09■□□□□ 0.81
HMGA2-209ENST00000539662 WIZO95785 1651 aa20.07■□□□□ 0.8
HMGA2-209ENST00000539662 BAZ1BQ9UIG0 1483 aaKnown RBP20.05■□□□□ 0.8
HMGA2-209ENST00000539662 RSF1Q96T23 1441 aaPredicted RBP19.99■□□□□ 0.79
HMGA2-209ENST00000539662 NESP48681 1621 aa19.86■□□□□ 0.77
HMGA2-209ENST00000539662 TOP2AP11388 1531 aaKnown RBP19.76■□□□□ 0.75
HMGA2-209ENST00000539662 ERCC6Q03468 1493 aa19.67■□□□□ 0.74
HMGA2-209ENST00000539662 LAMC3Q9Y6N6 1575 aa19.66■□□□□ 0.74
HMGA2-209ENST00000539662 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
HMGA2-209ENST00000539662 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
HMGA2-209ENST00000539662 CCDC88BA6NC98 1476 aa19.58■□□□□ 0.72
HMGA2-209ENST00000539662 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
HMGA2-209ENST00000539662 CFTRP13569 1480 aa19.51■□□□□ 0.71
HMGA2-209ENST00000539662 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
HMGA2-209ENST00000539662 SUPT5HO00267 1087 aaKnown RBP19.49■□□□□ 0.71
HMGA2-209ENST00000539662 CUX2O14529 1486 aa19.43■□□□□ 0.7
HMGA2-209ENST00000539662 FANCD2Q9BXW9 1451 aa19.42■□□□□ 0.7
HMGA2-209ENST00000539662 CEP164Q9UPV0 1460 aa19.37■□□□□ 0.69
HMGA2-209ENST00000539662 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
HMGA2-209ENST00000539662 MRC2Q9UBG0 1479 aa19.36■□□□□ 0.69
HMGA2-209ENST00000539662 WDR62O43379 1518 aa19.31■□□□□ 0.68
HMGA2-209ENST00000539662 URB2Q14146 1524 aaKnown RBP19.28■□□□□ 0.68
HMGA2-209ENST00000539662 TOPBP1Q92547 1522 aa19.12■□□□□ 0.65
HMGA2-209ENST00000539662 DNMBPQ6XZF7 1577 aa19.07■□□□□ 0.64
HMGA2-209ENST00000539662 CUX1P39880 1505 aa19■□□□□ 0.63
HMGA2-209ENST00000539662 ABCC8Q09428 1581 aa19■□□□□ 0.63
HMGA2-209ENST00000539662 ZNF608Q9ULD9 1512 aaPredicted RBP18.99■□□□□ 0.63
HMGA2-209ENST00000539662 POLA1P09884 1462 aaPredicted RBP18.97■□□□□ 0.63
HMGA2-209ENST00000539662 IFT140Q96RY7 1462 aa18.95■□□□□ 0.62
HMGA2-209ENST00000539662 TARBP1Q13395 1621 aaKnown RBP18.94■□□□□ 0.62
HMGA2-209ENST00000539662 DNAJC5Q9H3Z4 198 aa18.94■□□□□ 0.62
HMGA2-209ENST00000539662 RAD54L2Q9Y4B4 1467 aa18.93■□□□□ 0.62
HMGA2-209ENST00000539662 FGD5Q6ZNL6 1462 aa18.91■□□□□ 0.62
HMGA2-209ENST00000539662 EIF4G3O43432 1585 aaKnown RBP18.86■□□□□ 0.61
HMGA2-209ENST00000539662 AQRO60306 1485 aaKnown RBP eCLIP18.86■□□□□ 0.61
HMGA2-209ENST00000539662 SOGA1O94964 1423 aa18.86■□□□□ 0.61
HMGA2-209ENST00000539662 SYNJ1O43426 1573 aa18.85■□□□□ 0.61
HMGA2-209ENST00000539662 TDRD9Q8NDG6 1382 aaKnown RBP18.81■□□□□ 0.6
HMGA2-209ENST00000539662 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.6
HMGA2-209ENST00000539662 BIVM-ERCC5R4GMW8 1640 aa18.79■□□□□ 0.6
HMGA2-209ENST00000539662 TOP2BQ02880 1626 aa18.78■□□□□ 0.6
HMGA2-209ENST00000539662 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
HMGA2-209ENST00000539662 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
HMGA2-209ENST00000539662 CHD1O14646 1710 aa18.66■□□□□ 0.58
HMGA2-209ENST00000539662 ABCA5Q8WWZ7 1642 aa18.66■□□□□ 0.58
HMGA2-209ENST00000539662 OSCARQ8IYS5 282 aa18.65■□□□□ 0.58
HMGA2-209ENST00000539662 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
HMGA2-209ENST00000539662 PBRM1Q86U86 1689 aa18.64■□□□□ 0.57
HMGA2-209ENST00000539662 GAPVD1Q14C86 1478 aa18.64■□□□□ 0.57
HMGA2-209ENST00000539662 GRIN2BQ13224 1484 aa18.62■□□□□ 0.57
HMGA2-209ENST00000539662 FBLN2P98095 1184 aa18.6■□□□□ 0.57
HMGA2-209ENST00000539662 MAGI1Q96QZ7 1491 aaPredicted RBP18.55■□□□□ 0.56
HMGA2-209ENST00000539662 SYNJ2O15056 1496 aa18.51■□□□□ 0.55
HMGA2-209ENST00000539662 CHMP7Q8WUX9 453 aaPredicted RBP18.49■□□□□ 0.55
HMGA2-209ENST00000539662 ADAMTS12P58397 1594 aa18.47■□□□□ 0.55
HMGA2-209ENST00000539662 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
HMGA2-209ENST00000539662 RIMBP3CA6NJZ7 1639 aa18.43■□□□□ 0.54
HMGA2-209ENST00000539662 RIMBP3BA6NNM3 1639 aa18.43■□□□□ 0.54
HMGA2-209ENST00000539662 RIMBP3Q9UFD9 1639 aa18.43■□□□□ 0.54
HMGA2-209ENST00000539662 CLASP1Q7Z460 1538 aa18.43■□□□□ 0.54
HMGA2-209ENST00000539662 GRIN2AQ12879 1464 aa18.4■□□□□ 0.54
HMGA2-209ENST00000539662 ARHGEF11O15085 1522 aa18.4■□□□□ 0.54
HMGA2-209ENST00000539662 FHAD1B1AJZ9 1412 aa18.4■□□□□ 0.54
HMGA2-209ENST00000539662 IGF1RP08069 1367 aa18.38■□□□□ 0.53
HMGA2-209ENST00000539662 KIF27Q86VH2 1401 aa18.38■□□□□ 0.53
HMGA2-209ENST00000539662 RUSC2Q8N2Y8 1516 aa18.38■□□□□ 0.53
HMGA2-209ENST00000539662 CEP170Q5SW79 1584 aa18.37■□□□□ 0.53
HMGA2-209ENST00000539662 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
HMGA2-209ENST00000539662 NUP160Q12769 1436 aa18.32■□□□□ 0.52
HMGA2-209ENST00000539662 ARAP1Q96P48 1450 aa18.27■□□□□ 0.52
HMGA2-209ENST00000539662 CUL7Q14999 1698 aa18.27■□□□□ 0.52
HMGA2-209ENST00000539662 ERCC6L2Q5T890 1561 aa18.26■□□□□ 0.51
HMGA2-209ENST00000539662 CYB5RLQ6IPT4 315 aa18.24■□□□□ 0.51
HMGA2-209ENST00000539662 CARMIL1Q5VZK9 1371 aa18.23■□□□□ 0.51
HMGA2-209ENST00000539662 SHROOM2Q13796 1616 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms