RNA–Protein interactions for RNA: ENST00000393577.7

HMGA2-202, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3 BASIC

Gene HMGA2, Length 611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-202ENST00000393577 NISCHQ9Y2I1 1504 aa56.81■■■■■ 6.68
HMGA2-202ENST00000393577 CCDC180Q9P1Z9 1646 aa50.66■■■■■ 5.7
HMGA2-202ENST00000393577 ABCC9O60706 1549 aa49.89■■■■■ 5.58
HMGA2-202ENST00000393577 RB1CC1Q8TDY2 1594 aa47.83■■■■■ 5.25
HMGA2-202ENST00000393577 NACADO15069 1562 aa47.68■■■■■ 5.22
HMGA2-202ENST00000393577 DCAF8L2P0C7V8 631 aa47.61■■■■■ 5.21
HMGA2-202ENST00000393577 ZCCHC6Q5VYS8 1495 aaKnown RBP47.27■■■■■ 5.16
HMGA2-202ENST00000393577 MYO15BQ96JP2 1530 aa47.25■■■■■ 5.16
HMGA2-202ENST00000393577 DCAF1Q9Y4B6 1507 aa46.96■■■■■ 5.11
HMGA2-202ENST00000393577 UNC13AQ9UPW8 1703 aa46.81■■■■■ 5.08
HMGA2-202ENST00000393577 PABPN1Q86U42 306 aaKnown RBP eCLIP46.55■■■■■ 5.04
HMGA2-202ENST00000393577 BICRAQ9NZM4 1560 aa46.4■■■■■ 5.02
HMGA2-202ENST00000393577 SCRIBQ14160 1630 aa46.25■■■■■ 4.99
HMGA2-202ENST00000393577 DNAJC5BQ9UF47 199 aa46.03■■■■■ 4.96
HMGA2-202ENST00000393577 SHROOM4Q9ULL8 1493 aa45.84■■■■■ 4.93
HMGA2-202ENST00000393577 EIF4G1Q04637 1599 aaKnown RBP45.21■■■■■ 4.83
HMGA2-202ENST00000393577 CC2D2AQ9P2K1 1620 aa45.12■■■■■ 4.81
HMGA2-202ENST00000393577 CECR2Q9BXF3 1484 aa44.84■■■■■ 4.77
HMGA2-202ENST00000393577 SMARCA4P51532 1647 aa44.17■■■■■ 4.66
HMGA2-202ENST00000393577 BAZ1AQ9NRL2 1556 aaPredicted RBP44.06■■■■■ 4.64
HMGA2-202ENST00000393577 ATAD2BQ9ULI0 1458 aa43.99■■■■■ 4.63
HMGA2-202ENST00000393577 NCAPD3P42695 1498 aa43.98■■■■■ 4.63
HMGA2-202ENST00000393577 SMARCA2P51531 1590 aa43.92■■■■■ 4.62
HMGA2-202ENST00000393577 MROH2BQ7Z745 1585 aa43.8■■■■■ 4.6
HMGA2-202ENST00000393577 HMGXB3Q12766 1538 aa43.77■■■■■ 4.6
HMGA2-202ENST00000393577 PEG3Q9GZU2 1588 aa43.71■■■■■ 4.59
HMGA2-202ENST00000393577 BAZ1BQ9UIG0 1483 aaKnown RBP43.63■■■■■ 4.57
HMGA2-202ENST00000393577 WIZO95785 1651 aa43.34■■■■■ 4.53
HMGA2-202ENST00000393577 RSF1Q96T23 1441 aaPredicted RBP43.16■■■■■ 4.5
HMGA2-202ENST00000393577 NESP48681 1621 aa43.08■■■■■ 4.49
HMGA2-202ENST00000393577 ERCC6Q03468 1493 aa43.02■■■■■ 4.48
HMGA2-202ENST00000393577 LAMC3Q9Y6N6 1575 aa42.9■■■■■ 4.46
HMGA2-202ENST00000393577 TOP2AP11388 1531 aaKnown RBP42.83■■■■■ 4.45
HMGA2-202ENST00000393577 CADPSQ9ULU8 1353 aa42.69■■■■■ 4.42
HMGA2-202ENST00000393577 CUX2O14529 1486 aa42.65■■■■■ 4.42
HMGA2-202ENST00000393577 PDS5BQ9NTI5 1447 aa42.61■■■■■ 4.41
HMGA2-202ENST00000393577 KIF21AQ7Z4S6 1674 aa42.6■■■■■ 4.41
HMGA2-202ENST00000393577 THOC2Q8NI27 1593 aaKnown RBP42.51■■■■■ 4.4
HMGA2-202ENST00000393577 CFTRP13569 1480 aa42.38■■■■■ 4.38
HMGA2-202ENST00000393577 CCDC88BA6NC98 1476 aa42.31■■■■■ 4.36
HMGA2-202ENST00000393577 FANCD2Q9BXW9 1451 aa42.23■■■■■ 4.35
HMGA2-202ENST00000393577 MRC2Q9UBG0 1479 aa42.22■■■■■ 4.35
HMGA2-202ENST00000393577 CEP164Q9UPV0 1460 aa42.22■■■■■ 4.35
HMGA2-202ENST00000393577 PRDM2Q13029 1718 aa42.11■■■■■ 4.33
HMGA2-202ENST00000393577 WDR62O43379 1518 aa42.09■■■■■ 4.33
HMGA2-202ENST00000393577 SUPT5HO00267 1087 aaKnown RBP41.86■■■■■ 4.29
HMGA2-202ENST00000393577 URB2Q14146 1524 aaKnown RBP41.85■■■■■ 4.29
HMGA2-202ENST00000393577 DNAJC5Q9H3Z4 198 aa41.67■■■■■ 4.26
HMGA2-202ENST00000393577 TOPBP1Q92547 1522 aa41.53■■■■■ 4.24
HMGA2-202ENST00000393577 ABCC8Q09428 1581 aa41.46■■■■■ 4.23
HMGA2-202ENST00000393577 DNMBPQ6XZF7 1577 aa41.46■■■■■ 4.23
HMGA2-202ENST00000393577 IFT140Q96RY7 1462 aa41.33■■■■■ 4.21
HMGA2-202ENST00000393577 ZNF608Q9ULD9 1512 aaPredicted RBP41.2■■■■■ 4.19
HMGA2-202ENST00000393577 POLA1P09884 1462 aaPredicted RBP41.15■■■■■ 4.18
HMGA2-202ENST00000393577 CUX1P39880 1505 aa41.11■■■■■ 4.17
HMGA2-202ENST00000393577 TARBP1Q13395 1621 aaKnown RBP41.11■■■■■ 4.17
HMGA2-202ENST00000393577 EIF4G3O43432 1585 aaKnown RBP41.04■■■■■ 4.16
HMGA2-202ENST00000393577 FGD5Q6ZNL6 1462 aa41.02■■■■■ 4.16
HMGA2-202ENST00000393577 RAD54L2Q9Y4B4 1467 aa40.99■■■■■ 4.15
HMGA2-202ENST00000393577 SOGA1O94964 1423 aa40.96■■■■■ 4.15
HMGA2-202ENST00000393577 AQRO60306 1485 aaKnown RBP eCLIP40.91■■■■■ 4.143e-8■■□□□ 13.1
HMGA2-202ENST00000393577 OSCARQ8IYS5 282 aa40.8■■■■■ 4.12
HMGA2-202ENST00000393577 TDRD9Q8NDG6 1382 aaKnown RBP40.78■■■■■ 4.12
HMGA2-202ENST00000393577 WDR97A6NE52 1622 aa40.74■■■■■ 4.11
HMGA2-202ENST00000393577 WRNQ14191 1432 aaPredicted RBP eCLIP40.71■■■■■ 4.11
HMGA2-202ENST00000393577 BIVM-ERCC5R4GMW8 1640 aa40.68■■■■■ 4.1
HMGA2-202ENST00000393577 SYNJ1O43426 1573 aa40.67■■■■■ 4.1
HMGA2-202ENST00000393577 TOP2BQ02880 1626 aa40.67■■■■■ 4.1
HMGA2-202ENST00000393577 CHD1O14646 1710 aa40.61■■■■■ 4.09
HMGA2-202ENST00000393577 ABCA10Q8WWZ4 1543 aa40.58■■■■■ 4.09
HMGA2-202ENST00000393577 SNAPC4Q5SXM2 1469 aa40.55■■■■■ 4.08
HMGA2-202ENST00000393577 GRIN2BQ13224 1484 aa40.52■■■■■ 4.08
HMGA2-202ENST00000393577 GAPVD1Q14C86 1478 aa40.5■■■■■ 4.07
HMGA2-202ENST00000393577 PBRM1Q86U86 1689 aa40.49■■■■■ 4.07
HMGA2-202ENST00000393577 ABCA5Q8WWZ7 1642 aa40.49■■■■■ 4.07
HMGA2-202ENST00000393577 FBLN2P98095 1184 aa40.48■■■■■ 4.07
HMGA2-202ENST00000393577 MAGI1Q96QZ7 1491 aaPredicted RBP40.45■■■■■ 4.07
HMGA2-202ENST00000393577 CHMP7Q8WUX9 453 aaPredicted RBP40.3■■■■■ 4.04
HMGA2-202ENST00000393577 SYNJ2O15056 1496 aa40.3■■■■■ 4.04
HMGA2-202ENST00000393577 RIMBP3CA6NJZ7 1639 aa40.26■■■■■ 4.04
HMGA2-202ENST00000393577 RIMBP3BA6NNM3 1639 aa40.26■■■■■ 4.04
HMGA2-202ENST00000393577 RIMBP3Q9UFD9 1639 aa40.26■■■■■ 4.04
HMGA2-202ENST00000393577 TRIM41Q8WV44 630 aa40.24■■■■■ 4.03
HMGA2-202ENST00000393577 ARHGEF11O15085 1522 aa40.2■■■■■ 4.03
HMGA2-202ENST00000393577 ADAMTS12P58397 1594 aa40.13■■■■■ 4.01
HMGA2-202ENST00000393577 CLASP1Q7Z460 1538 aa40.11■■■■■ 4.01
HMGA2-202ENST00000393577 ERICH3Q5RHP9 1530 aa40.1■■■■■ 4.01
HMGA2-202ENST00000393577 GRIN2AQ12879 1464 aa40.01■■■■■ 4
HMGA2-202ENST00000393577 FHAD1B1AJZ9 1412 aa40■■■■□ 3.99
HMGA2-202ENST00000393577 KIF27Q86VH2 1401 aa39.87■■■■□ 3.97
HMGA2-202ENST00000393577 ARAP1Q96P48 1450 aa39.86■■■■□ 3.97
HMGA2-202ENST00000393577 CEP170Q5SW79 1584 aa39.85■■■■□ 3.97
HMGA2-202ENST00000393577 NUP160Q12769 1436 aa39.83■■■■□ 3.97
HMGA2-202ENST00000393577 CYB5RLQ6IPT4 315 aa39.81■■■■□ 3.96
HMGA2-202ENST00000393577 IGF1RP08069 1367 aa39.73■■■■□ 3.95
HMGA2-202ENST00000393577 CUL7Q14999 1698 aa39.7■■■■□ 3.95
HMGA2-202ENST00000393577 SHROOM2Q13796 1616 aa39.59■■■■□ 3.93
HMGA2-202ENST00000393577 ERCC6L2Q5T890 1561 aa39.56■■■■□ 3.92
HMGA2-202ENST00000393577 RUSC2Q8N2Y8 1516 aa39.55■■■■□ 3.92
HMGA2-202ENST00000393577 CARMIL1Q5VZK9 1371 aa39.51■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms