RNA–Protein interactions for RNA: ENST00000545305.1

SCARB1-209, Transcript of scavenger receptor class B member 1, humanhuman

TSL 2

Gene SCARB1, Length 851 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-209ENST00000545305 NISCHQ9Y2I1 1504 aa31.84■■■□□ 2.69
SCARB1-209ENST00000545305 CCDC180Q9P1Z9 1646 aa28■■■□□ 2.07
SCARB1-209ENST00000545305 ZCCHC6Q5VYS8 1495 aaKnown RBP26.7■■□□□ 1.87
SCARB1-209ENST00000545305 ABCC9O60706 1549 aa26.63■■□□□ 1.85
SCARB1-209ENST00000545305 DCAF1Q9Y4B6 1507 aa26.38■■□□□ 1.81
SCARB1-209ENST00000545305 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
SCARB1-209ENST00000545305 MYO15BQ96JP2 1530 aa26.19■■□□□ 1.78
SCARB1-209ENST00000545305 NACADO15069 1562 aa26.11■■□□□ 1.77
SCARB1-209ENST00000545305 RB1CC1Q8TDY2 1594 aa25.98■■□□□ 1.75
SCARB1-209ENST00000545305 SHROOM4Q9ULL8 1493 aa25.69■■□□□ 1.7
SCARB1-209ENST00000545305 SCRIBQ14160 1630 aa25.63■■□□□ 1.69
SCARB1-209ENST00000545305 UNC13AQ9UPW8 1703 aa25.37■■□□□ 1.65
SCARB1-209ENST00000545305 BICRAQ9NZM4 1560 aa25.1■■□□□ 1.61
SCARB1-209ENST00000545305 PABPN1Q86U42 306 aaKnown RBP eCLIP24.99■■□□□ 1.59
SCARB1-209ENST00000545305 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.54
SCARB1-209ENST00000545305 BAZ1AQ9NRL2 1556 aaPredicted RBP24.66■■□□□ 1.54
SCARB1-209ENST00000545305 SUPT5HO00267 1087 aaKnown RBP24.57■■□□□ 1.52
SCARB1-209ENST00000545305 SMARCA4P51532 1647 aa24.56■■□□□ 1.52
SCARB1-209ENST00000545305 MROH2BQ7Z745 1585 aa24.55■■□□□ 1.52
SCARB1-209ENST00000545305 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
SCARB1-209ENST00000545305 EIF4G1Q04637 1599 aaKnown RBP24.41■■□□□ 1.5
SCARB1-209ENST00000545305 WIZO95785 1651 aa24.34■■□□□ 1.49
SCARB1-209ENST00000545305 PEG3Q9GZU2 1588 aa24.28■■□□□ 1.48
SCARB1-209ENST00000545305 SMARCA2P51531 1590 aa24.25■■□□□ 1.47
SCARB1-209ENST00000545305 ATAD2BQ9ULI0 1458 aa24.2■■□□□ 1.47
SCARB1-209ENST00000545305 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
SCARB1-209ENST00000545305 CC2D2AQ9P2K1 1620 aa24.11■■□□□ 1.45
SCARB1-209ENST00000545305 BAZ1BQ9UIG0 1483 aaKnown RBP24.09■■□□□ 1.45
SCARB1-209ENST00000545305 NCAPD3P42695 1498 aa24.05■■□□□ 1.44
SCARB1-209ENST00000545305 HMGXB3Q12766 1538 aa24.05■■□□□ 1.44
SCARB1-209ENST00000545305 CCDC88BA6NC98 1476 aa23.83■■□□□ 1.41
SCARB1-209ENST00000545305 DNAJC5BQ9UF47 199 aa23.62■■□□□ 1.37
SCARB1-209ENST00000545305 CFTRP13569 1480 aa23.43■■□□□ 1.34
SCARB1-209ENST00000545305 CADPSQ9ULU8 1353 aa23.4■■□□□ 1.34
SCARB1-209ENST00000545305 PRDM2Q13029 1718 aa23.38■■□□□ 1.33
SCARB1-209ENST00000545305 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
SCARB1-209ENST00000545305 LAMC3Q9Y6N6 1575 aa23.34■■□□□ 1.33
SCARB1-209ENST00000545305 NESP48681 1621 aa23.26■■□□□ 1.31
SCARB1-209ENST00000545305 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
SCARB1-209ENST00000545305 TRIM41Q8WV44 630 aa23.17■■□□□ 1.3
SCARB1-209ENST00000545305 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
SCARB1-209ENST00000545305 WRNQ14191 1432 aaPredicted RBP eCLIP23.16■■□□□ 1.3
SCARB1-209ENST00000545305 PDS5BQ9NTI5 1447 aa23.16■■□□□ 1.3
SCARB1-209ENST00000545305 CEP164Q9UPV0 1460 aa23.09■■□□□ 1.29
SCARB1-209ENST00000545305 SYNJ1O43426 1573 aa23.06■■□□□ 1.28
SCARB1-209ENST00000545305 KIF21AQ7Z4S6 1674 aa23.03■■□□□ 1.28
SCARB1-209ENST00000545305 TOP2BQ02880 1626 aa23.02■■□□□ 1.28
SCARB1-209ENST00000545305 BIVM-ERCC5R4GMW8 1640 aa23.01■■□□□ 1.27
SCARB1-209ENST00000545305 CUX1P39880 1505 aa23■■□□□ 1.27
SCARB1-209ENST00000545305 DNMBPQ6XZF7 1577 aa22.94■■□□□ 1.26
SCARB1-209ENST00000545305 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
SCARB1-209ENST00000545305 TOPBP1Q92547 1522 aa22.88■■□□□ 1.25
SCARB1-209ENST00000545305 MRC2Q9UBG0 1479 aa22.88■■□□□ 1.25
SCARB1-209ENST00000545305 URB2Q14146 1524 aaKnown RBP22.87■■□□□ 1.25
SCARB1-209ENST00000545305 FGD5Q6ZNL6 1462 aa22.81■■□□□ 1.24
SCARB1-209ENST00000545305 WDR62O43379 1518 aa22.75■■□□□ 1.23
SCARB1-209ENST00000545305 THOC2Q8NI27 1593 aaKnown RBP22.75■■□□□ 1.23
SCARB1-209ENST00000545305 EEA1Q15075 1411 aa22.74■■□□□ 1.23
SCARB1-209ENST00000545305 POLA1P09884 1462 aaPredicted RBP22.73■■□□□ 1.23
SCARB1-209ENST00000545305 SOGA1O94964 1423 aa22.7■■□□□ 1.22
SCARB1-209ENST00000545305 FAM9AQ8IZU1 332 aaPredicted RBP22.68■■□□□ 1.22
SCARB1-209ENST00000545305 RAD54L2Q9Y4B4 1467 aa22.62■■□□□ 1.21
SCARB1-209ENST00000545305 KIF27Q86VH2 1401 aa22.62■■□□□ 1.21
SCARB1-209ENST00000545305 ABCA10Q8WWZ4 1543 aa22.62■■□□□ 1.21
SCARB1-209ENST00000545305 CUX2O14529 1486 aa22.61■■□□□ 1.21
SCARB1-209ENST00000545305 RUSC2Q8N2Y8 1516 aa22.61■■□□□ 1.21
SCARB1-209ENST00000545305 WDR97A6NE52 1622 aa22.58■■□□□ 1.21
SCARB1-209ENST00000545305 IFT140Q96RY7 1462 aa22.55■■□□□ 1.2
SCARB1-209ENST00000545305 TARBP1Q13395 1621 aaKnown RBP22.55■■□□□ 1.2
SCARB1-209ENST00000545305 CSRNP3Q8WYN3 585 aa22.54■■□□□ 1.2
SCARB1-209ENST00000545305 ABCA5Q8WWZ7 1642 aa22.46■■□□□ 1.19
SCARB1-209ENST00000545305 KIF21BO75037 1637 aa22.43■■□□□ 1.18
SCARB1-209ENST00000545305 TDRD9Q8NDG6 1382 aaKnown RBP22.42■■□□□ 1.18
SCARB1-209ENST00000545305 GAPVD1Q14C86 1478 aa22.41■■□□□ 1.18
SCARB1-209ENST00000545305 LOC105371045A0A1W2PR82 267 aa22.39■■□□□ 1.17
SCARB1-209ENST00000545305 GOLGA3Q08378 1498 aa22.38■■□□□ 1.17
SCARB1-209ENST00000545305 IGF1RP08069 1367 aa22.38■■□□□ 1.17
SCARB1-209ENST00000545305 ERICH3Q5RHP9 1530 aa22.37■■□□□ 1.17
SCARB1-209ENST00000545305 ZNF608Q9ULD9 1512 aaPredicted RBP22.36■■□□□ 1.17
SCARB1-209ENST00000545305 CUL7Q14999 1698 aa22.36■■□□□ 1.17
SCARB1-209ENST00000545305 PRXQ9BXM0 1461 aa22.35■■□□□ 1.17
SCARB1-209ENST00000545305 EHMT2Q96KQ7 1210 aa22.35■■□□□ 1.17
SCARB1-209ENST00000545305 PBRM1Q86U86 1689 aa22.35■■□□□ 1.17
SCARB1-209ENST00000545305 EIF4G3O43432 1585 aaKnown RBP22.34■■□□□ 1.17
SCARB1-209ENST00000545305 AQRO60306 1485 aaKnown RBP eCLIP22.34■■□□□ 1.179e-7■■■□□ 17.7
SCARB1-209ENST00000545305 GRIN2BQ13224 1484 aa22.31■■□□□ 1.16
SCARB1-209ENST00000545305 CARMIL1Q5VZK9 1371 aa22.29■■□□□ 1.16
SCARB1-209ENST00000545305 RAPGEF2Q9Y4G8 1499 aa22.28■■□□□ 1.16
SCARB1-209ENST00000545305 UBTFP17480 764 aaKnown RBP22.24■■□□□ 1.15
SCARB1-209ENST00000545305 ADAMTS12P58397 1594 aa22.21■■□□□ 1.15
SCARB1-209ENST00000545305 TNIKQ9UKE5 1360 aa22.21■■□□□ 1.15
SCARB1-209ENST00000545305 FHAD1B1AJZ9 1412 aa22.19■■□□□ 1.14
SCARB1-209ENST00000545305 SNAPC4Q5SXM2 1469 aa22.18■■□□□ 1.14
SCARB1-209ENST00000545305 MAGI1Q96QZ7 1491 aaPredicted RBP22.17■■□□□ 1.14
SCARB1-209ENST00000545305 CEP162Q5TB80 1403 aa22.08■■□□□ 1.13
SCARB1-209ENST00000545305 SYNJ2O15056 1496 aa22.07■■□□□ 1.12
SCARB1-209ENST00000545305 CTTNBP2Q8WZ74 1663 aa22.04■■□□□ 1.12
SCARB1-209ENST00000545305 GRIN2AQ12879 1464 aa22.03■■□□□ 1.12
SCARB1-209ENST00000545305 CHMP7Q8WUX9 453 aaPredicted RBP22■■□□□ 1.11
SCARB1-209ENST00000545305 CLIP1P30622 1438 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms