Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC7.26□□□□□ -1.253e-7■■■□□ 16.7
LSM11P83369 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.111e-6■■■□□ 16.7
LSM11P83369 DDX56-204ENST00000431640 1554 ntTSL 1 (best) BASIC11.89□□□□□ -0.511e-6■■■□□ 16.7
LSM11P83369 DDX56-206ENST00000446987 1853 ntTSL 511.68□□□□□ -0.541e-6■■■□□ 16.7
LSM11P83369 DDX56-203ENST00000421223 3028 ntTSL 210.36□□□□□ -0.751e-6■■■□□ 16.7
LSM11P83369 ISYNA1-209ENST00000582287 696 ntTSL 1 (best)16.38■□□□□ 0.211e-8■■■□□ 16.7
LSM11P83369 ISYNA1-214ENST00000583816 860 ntTSL 312.77□□□□□ -0.372e-8■■■□□ 16.7
LSM11P83369 ISYNA1-212ENST00000583309 371 ntTSL 210.9□□□□□ -0.662e-8■■■□□ 16.7
LSM11P83369 ISYNA1-207ENST00000581672 793 ntTSL 28.97□□□□□ -0.971e-8■■■□□ 16.7
LSM11P83369 NT5C-202ENST00000577523 776 ntTSL 219.04■□□□□ 0.641e-9■■■□□ 16.7
LSM11P83369 NT5C-213ENST00000583655 1315 ntTSL 218.4■□□□□ 0.541e-9■■■□□ 16.7
LSM11P83369 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.491e-9■■■□□ 16.7
LSM11P83369 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.51■□□□□ 0.231e-9■■■□□ 16.7
LSM11P83369 NT5C-209ENST00000580758 958 ntTSL 216.17■□□□□ 0.181e-9■■■□□ 16.7
LSM11P83369 NT5C-205ENST00000578407 720 ntTSL 315.75■□□□□ 0.111e-9■■■□□ 16.7
LSM11P83369 NT5C-208ENST00000580423 450 ntTSL 215.42■□□□□ 0.061e-9■■■□□ 16.7
LSM11P83369 NT5C-212ENST00000582744 921 ntTSL 214.48□□□□□ -0.091e-9■■■□□ 16.7
LSM11P83369 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.251e-9■■■□□ 16.7
LSM11P83369 SLC51A-214ENST00000496737 677 ntTSL 311.11□□□□□ -0.631e-9■■■□□ 16.7
LSM11P83369 ANKZF1-219ENST00000483188 529 ntTSL 210.05□□□□□ -0.81e-9■■■□□ 16.7
LSM11P83369 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.02□□□□□ -0.011e-6■■■□□ 16.7
LSM11P83369 RTEL1-TNFRSF6B-203ENST00000492259 4824 ntAPPRIS ALT2 TSL 513.65□□□□□ -0.221e-6■■■□□ 16.7
LSM11P83369 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.46□□□□□ -0.251e-6■■■□□ 16.7
LSM11P83369 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.4□□□□□ -0.261e-6■■■□□ 16.7
LSM11P83369 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.291e-6■■■□□ 16.7
LSM11P83369 ZCCHC7-203ENST00000461038 2793 ntTSL 1 (best)14.54□□□□□ -0.084e-24■■■□□ 16.6
LSM11P83369 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.274e-24■■■□□ 16.6
LSM11P83369 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC11.58□□□□□ -0.564e-24■■■□□ 16.6
LSM11P83369 ZCCHC7-206ENST00000488607 884 ntTSL 29.72□□□□□ -0.854e-24■■■□□ 16.6
LSM11P83369 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.274e-24■■■□□ 16.6
LSM11P83369 RRP1-202ENST00000471909 2544 ntTSL 1 (best)16.23■□□□□ 0.194e-7■■■□□ 16.6
LSM11P83369 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.014e-7■■■□□ 16.6
LSM11P83369 RRP1-201ENST00000467112 3019 ntTSL 1 (best)14.19□□□□□ -0.144e-7■■■□□ 16.6
LSM11P83369 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC11.41□□□□□ -0.588e-30■■■□□ 16.6
LSM11P83369 RASSF1-207ENST00000482447 1711 ntTSL 1 (best)19.93■□□□□ 0.782e-10■■■□□ 16.5
LSM11P83369 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.712e-10■■■□□ 16.5
LSM11P83369 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.472e-10■■■□□ 16.5
LSM11P83369 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.38■□□□□ 0.372e-10■■■□□ 16.5
LSM11P83369 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.9■□□□□ 0.32e-10■■■□□ 16.5
LSM11P83369 RASSF1-204ENST00000395117 1745 ntTSL 216.67■□□□□ 0.262e-10■■■□□ 16.5
LSM11P83369 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.06■□□□□ 02e-10■■■□□ 16.5
LSM11P83369 SLC25A10-207ENST00000574129 1523 ntTSL 528.02■■■□□ 2.089e-12■■■□□ 16.5
LSM11P83369 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC27.31■■□□□ 1.969e-12■■■□□ 16.5
LSM11P83369 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.199e-12■■■□□ 16.5
LSM11P83369 C19orf60-206ENST00000598375 1792 ntTSL 520.82■□□□□ 0.922e-6■■■□□ 16.5
LSM11P83369 C19orf60-207ENST00000600997 2275 ntTSL 219.57■□□□□ 0.722e-6■■■□□ 16.5
LSM11P83369 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.692e-6■■■□□ 16.5
LSM11P83369 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.692e-6■■■□□ 16.5
LSM11P83369 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.8■□□□□ 0.69e-12■■■□□ 16.5
LSM11P83369 C19orf60-205ENST00000597371 1081 ntTSL 318.8■□□□□ 0.62e-6■■■□□ 16.5
LSM11P83369 C19orf60-208ENST00000601736 491 ntTSL 214.95□□□□□ -0.022e-6■■■□□ 16.5
LSM11P83369 C19orf60-204ENST00000595490 410 ntTSL 314.52□□□□□ -0.092e-6■■■□□ 16.5
LSM11P83369 C19orf60-203ENST00000595077 2465 nt13.43□□□□□ -0.262e-6■■■□□ 16.5
LSM11P83369 PGGHG-202ENST00000409479 3062 ntTSL 5 BASIC11.83□□□□□ -0.529e-7■■■□□ 16.5
LSM11P83369 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.05□□□□□ -0.165e-7■■■□□ 16.5
LSM11P83369 CPSF6-201ENST00000266679 2229 ntTSL 1 (best) BASIC12.14□□□□□ -0.475e-7■■■□□ 16.5
LSM11P83369 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.285e-7■■■□□ 16.5
LSM11P83369 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC4.09□□□□□ -1.755e-7■■■□□ 16.5
LSM11P83369 RECQL5-205ENST00000443199 3089 ntTSL 1 (best)13.06□□□□□ -0.323e-6■■■□□ 16.5
LSM11P83369 RECQL5-207ENST00000578865 1176 ntTSL 1 (best)12.77□□□□□ -0.373e-6■■■□□ 16.5
LSM11P83369 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC12.04□□□□□ -0.483e-6■■■□□ 16.5
LSM11P83369 RECQL5-201ENST00000317905 3704 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.573e-6■■■□□ 16.5
LSM11P83369 RECQL5-213ENST00000581825 793 ntTSL 311.32□□□□□ -0.63e-6■■■□□ 16.5
LSM11P83369 TRO-219ENST00000469211 842 ntTSL 29.03□□□□□ -0.963e-6■■■□□ 16.5
LSM11P83369 ZNF598-206ENST00000564824 2147 ntTSL 523.8■■□□□ 1.43e-6■■■□□ 16.5
LSM11P83369 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.193e-6■■■□□ 16.5
LSM11P83369 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.533e-6■■■□□ 16.5
LSM11P83369 ZNF598-203ENST00000562988 3382 ntTSL 518.3■□□□□ 0.523e-6■■■□□ 16.5
LSM11P83369 ZNF598-207ENST00000565396 4457 ntTSL 217.87■□□□□ 0.453e-6■■■□□ 16.5
LSM11P83369 RTEL1-210ENST00000496816 2222 ntTSL 1 (best)18.35■□□□□ 0.531e-6■■■□□ 16.5
LSM11P83369 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.65■□□□□ 0.421e-6■■■□□ 16.5
LSM11P83369 RTEL1-TNFRSF6B-204ENST00000496281 5314 ntTSL 216■□□□□ 0.151e-6■■■□□ 16.5
LSM11P83369 RTEL1-TNFRSF6B-201ENST00000480273 5751 ntTSL 215.1■□□□□ 0.011e-6■■■□□ 16.5
LSM11P83369 DDX11-228ENST00000545115 545 ntTSL 512.32□□□□□ -0.442e-6■■■□□ 16.5
LSM11P83369 DDX11-223ENST00000542838 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.452e-6■■■□□ 16.5
LSM11P83369 DDX11-216ENST00000539702 951 ntTSL 511.83□□□□□ -0.522e-6■■■□□ 16.5
LSM11P83369 DDX11-208ENST00000536265 3603 ntTSL 510.73□□□□□ -0.692e-6■■■□□ 16.5
LSM11P83369 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.44e-6■■■□□ 16.4
LSM11P83369 TRO-202ENST00000319167 2326 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.434e-6■■■□□ 16.4
LSM11P83369 TRO-203ENST00000375022 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.434e-6■■■□□ 16.4
LSM11P83369 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.474e-6■■■□□ 16.4
LSM11P83369 TRO-215ENST00000445561 2597 ntTSL 1 (best)11.96□□□□□ -0.54e-6■■■□□ 16.4
LSM11P83369 TRO-201ENST00000173898 4647 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.694e-6■■■□□ 16.4
LSM11P83369 TRO-224ENST00000492706 3677 ntTSL 210.61□□□□□ -0.714e-6■■■□□ 16.4
LSM11P83369 TRO-204ENST00000375041 3488 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.864e-6■■■□□ 16.4
LSM11P83369 TRO-208ENST00000420798 3613 ntTSL 2 BASIC9.61□□□□□ -0.874e-6■■■□□ 16.4
LSM11P83369 OAZ1-206ENST00000589739 657 ntTSL 215.88■□□□□ 0.133e-7■■■□□ 16.4
LSM11P83369 TPCN1-222ENST00000552897 596 ntTSL 421.36■■□□□ 1.019e-7■■■□□ 16.4
LSM11P83369 TP53BP2-205ENST00000465119 465 ntTSL 520.12■□□□□ 0.819e-7■■■□□ 16.4
LSM11P83369 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.649e-7■■■□□ 16.4
LSM11P83369 TPCN1-216ENST00000551096 530 ntTSL 418.62■□□□□ 0.579e-7■■■□□ 16.4
LSM11P83369 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.62■□□□□ 0.579e-7■■■□□ 16.4
LSM11P83369 ACAP3-213ENST00000493992 326 ntTSL 518.41■□□□□ 0.549e-7■■■□□ 16.4
LSM11P83369 TPCN1-212ENST00000549279 544 ntTSL 417.53■□□□□ 0.49e-7■■■□□ 16.4
LSM11P83369 TPCN1-217ENST00000551099 570 ntTSL 417.5■□□□□ 0.399e-7■■■□□ 16.4
LSM11P83369 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.1■□□□□ 0.339e-7■■■□□ 16.4
LSM11P83369 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.07■□□□□ 0.329e-7■■■□□ 16.4
LSM11P83369 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.91■□□□□ 0.39e-7■■■□□ 16.4
LSM11P83369 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.63■□□□□ 0.259e-7■■■□□ 16.4
LSM11P83369 COPS7B-215ENST00000450501 559 ntTSL 416.53■□□□□ 0.249e-7■■■□□ 16.4
Retrieved 100 of 11,495 protein–RNA pairs in 80.3 ms