RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NISCHQ9Y2I1 1504 aa50.4■■■■■ 5.66
VPS29-206ENST00000549578 CCDC180Q9P1Z9 1646 aa44.5■■■■■ 4.71
VPS29-206ENST00000549578 ABCC9O60706 1549 aa43.05■■■■■ 4.48
VPS29-206ENST00000549578 ZCCHC6Q5VYS8 1495 aaKnown RBP42.12■■■■■ 4.33
VPS29-206ENST00000549578 DCAF8L2P0C7V8 631 aa41.93■■■■■ 4.3
VPS29-206ENST00000549578 NACADO15069 1562 aa41.7■■■■■ 4.27
VPS29-206ENST00000549578 DCAF1Q9Y4B6 1507 aa41.67■■■■■ 4.26
VPS29-206ENST00000549578 RB1CC1Q8TDY2 1594 aa41.61■■■■■ 4.25
VPS29-206ENST00000549578 MYO15BQ96JP2 1530 aa41.6■■■■■ 4.25
VPS29-206ENST00000549578 SCRIBQ14160 1630 aa40.75■■■■■ 4.11
VPS29-206ENST00000549578 UNC13AQ9UPW8 1703 aa40.72■■■■■ 4.11
VPS29-206ENST00000549578 BICRAQ9NZM4 1560 aa40.37■■■■■ 4.05
VPS29-206ENST00000549578 PABPN1Q86U42 306 aaKnown RBP eCLIP40.36■■■■■ 4.05
VPS29-206ENST00000549578 SHROOM4Q9ULL8 1493 aa40.28■■■■■ 4.04
VPS29-206ENST00000549578 EIF4G1Q04637 1599 aaKnown RBP39.25■■■■□ 3.87
VPS29-206ENST00000549578 CECR2Q9BXF3 1484 aa39.24■■■■□ 3.87
VPS29-206ENST00000549578 BAZ1AQ9NRL2 1556 aaPredicted RBP39.01■■■■□ 3.84
VPS29-206ENST00000549578 SMARCA4P51532 1647 aa38.99■■■■□ 3.83
VPS29-206ENST00000549578 DNAJC5BQ9UF47 199 aa38.98■■■■□ 3.83
VPS29-206ENST00000549578 CC2D2AQ9P2K1 1620 aa38.95■■■■□ 3.83
VPS29-206ENST00000549578 MROH2BQ7Z745 1585 aa38.89■■■■□ 3.82
VPS29-206ENST00000549578 RSF1Q96T23 1441 aaPredicted RBP38.64■■■■□ 3.78
VPS29-206ENST00000549578 ATAD2BQ9ULI0 1458 aa38.61■■■■□ 3.77
VPS29-206ENST00000549578 SMARCA2P51531 1590 aa38.57■■■■□ 3.77
VPS29-206ENST00000549578 PEG3Q9GZU2 1588 aa38.56■■■■□ 3.76
VPS29-206ENST00000549578 WIZO95785 1651 aa38.52■■■■□ 3.76
VPS29-206ENST00000549578 NCAPD3P42695 1498 aa38.47■■■■□ 3.75
VPS29-206ENST00000549578 HMGXB3Q12766 1538 aa38.34■■■■□ 3.73
VPS29-206ENST00000549578 BAZ1BQ9UIG0 1483 aaKnown RBP38.34■■■■□ 3.73
VPS29-206ENST00000549578 SUPT5HO00267 1087 aaKnown RBP38.18■■■■□ 3.7
VPS29-206ENST00000549578 TOP2AP11388 1531 aaKnown RBP38.1■■■■□ 3.69
VPS29-206ENST00000549578 CCDC88BA6NC98 1476 aa37.67■■■■□ 3.62
VPS29-206ENST00000549578 NESP48681 1621 aa37.44■■■■□ 3.58
VPS29-206ENST00000549578 CADPSQ9ULU8 1353 aa37.4■■■■□ 3.58
VPS29-206ENST00000549578 LAMC3Q9Y6N6 1575 aa37.37■■■■□ 3.57
VPS29-206ENST00000549578 CFTRP13569 1480 aa37.31■■■■□ 3.56
VPS29-206ENST00000549578 PDS5BQ9NTI5 1447 aa37.09■■■■□ 3.53
VPS29-206ENST00000549578 PRDM2Q13029 1718 aa37.07■■■■□ 3.53
VPS29-206ENST00000549578 ERCC6Q03468 1493 aa37.03■■■■□ 3.52
VPS29-206ENST00000549578 KIF21AQ7Z4S6 1674 aa37■■■■□ 3.51
VPS29-206ENST00000549578 FANCD2Q9BXW9 1451 aa37■■■■□ 3.51
VPS29-206ENST00000549578 CEP164Q9UPV0 1460 aa36.89■■■■□ 3.5
VPS29-206ENST00000549578 THOC2Q8NI27 1593 aaKnown RBP36.71■■■■□ 3.47
VPS29-206ENST00000549578 MRC2Q9UBG0 1479 aa36.7■■■■□ 3.47
VPS29-206ENST00000549578 URB2Q14146 1524 aaKnown RBP36.61■■■■□ 3.45
VPS29-206ENST00000549578 WDR62O43379 1518 aa36.55■■■■□ 3.44
VPS29-206ENST00000549578 ABCC8Q09428 1581 aa36.53■■■■□ 3.44
VPS29-206ENST00000549578 TOPBP1Q92547 1522 aa36.47■■■■□ 3.43
VPS29-206ENST00000549578 DNMBPQ6XZF7 1577 aa36.47■■■■□ 3.43
VPS29-206ENST00000549578 CUX1P39880 1505 aa36.45■■■■□ 3.42
VPS29-206ENST00000549578 WRNQ14191 1432 aaPredicted RBP eCLIP36.42■■■■□ 3.42
VPS29-206ENST00000549578 CUX2O14529 1486 aa36.37■■■■□ 3.41
VPS29-206ENST00000549578 SYNJ1O43426 1573 aa36.33■■■■□ 3.41
VPS29-206ENST00000549578 TOP2BQ02880 1626 aa36.26■■■■□ 3.4
VPS29-206ENST00000549578 BIVM-ERCC5R4GMW8 1640 aa36.26■■■■□ 3.39
VPS29-206ENST00000549578 FGD5Q6ZNL6 1462 aa36.22■■■■□ 3.39
VPS29-206ENST00000549578 POLA1P09884 1462 aaPredicted RBP36.21■■■■□ 3.39
VPS29-206ENST00000549578 RAD54L2Q9Y4B4 1467 aa36.08■■■■□ 3.37
VPS29-206ENST00000549578 SOGA1O94964 1423 aa36.06■■■■□ 3.36
VPS29-206ENST00000549578 IFT140Q96RY7 1462 aa36.06■■■■□ 3.36
VPS29-206ENST00000549578 TARBP1Q13395 1621 aaKnown RBP36.03■■■■□ 3.36
VPS29-206ENST00000549578 TRIM41Q8WV44 630 aa35.99■■■■□ 3.35
VPS29-206ENST00000549578 CHIC1Q5VXU3 224 aa35.96■■■■□ 3.35
VPS29-206ENST00000549578 ZNF608Q9ULD9 1512 aaPredicted RBP35.91■■■■□ 3.34
VPS29-206ENST00000549578 WDR97A6NE52 1622 aa35.88■■■■□ 3.33
VPS29-206ENST00000549578 ABCA10Q8WWZ4 1543 aa35.87■■■■□ 3.33
VPS29-206ENST00000549578 TDRD9Q8NDG6 1382 aaKnown RBP35.82■■■■□ 3.32
VPS29-206ENST00000549578 EIF4G3O43432 1585 aaKnown RBP35.78■■■■□ 3.32
VPS29-206ENST00000549578 AQRO60306 1485 aaKnown RBP eCLIP35.78■■■■□ 3.322e-9■■■■■ 38.2
VPS29-206ENST00000549578 ABCA5Q8WWZ7 1642 aa35.69■■■■□ 3.3
VPS29-206ENST00000549578 GAPVD1Q14C86 1478 aa35.66■■■■□ 3.3
VPS29-206ENST00000549578 KIF27Q86VH2 1401 aa35.59■■■■□ 3.29
VPS29-206ENST00000549578 GRIN2BQ13224 1484 aa35.56■■■■□ 3.28
VPS29-206ENST00000549578 PBRM1Q86U86 1689 aa35.56■■■■□ 3.28
VPS29-206ENST00000549578 RUSC2Q8N2Y8 1516 aa35.53■■■■□ 3.28
VPS29-206ENST00000549578 SNAPC4Q5SXM2 1469 aa35.46■■■■□ 3.27
VPS29-206ENST00000549578 ERICH3Q5RHP9 1530 aa35.44■■■■□ 3.26
VPS29-206ENST00000549578 MAGI1Q96QZ7 1491 aaPredicted RBP35.39■■■■□ 3.26
VPS29-206ENST00000549578 IGF1RP08069 1367 aa35.38■■■■□ 3.25
VPS29-206ENST00000549578 ADAMTS12P58397 1594 aa35.31■■■■□ 3.24
VPS29-206ENST00000549578 FAM9AQ8IZU1 332 aaPredicted RBP35.3■■■■□ 3.24
VPS29-206ENST00000549578 EEA1Q15075 1411 aa35.29■■■■□ 3.24
VPS29-206ENST00000549578 FHAD1B1AJZ9 1412 aa35.26■■■■□ 3.23
VPS29-206ENST00000549578 SYNJ2O15056 1496 aa35.25■■■■□ 3.23
VPS29-206ENST00000549578 CUL7Q14999 1698 aa35.24■■■■□ 3.23
VPS29-206ENST00000549578 FBLN2P98095 1184 aa35.24■■■■□ 3.23
VPS29-206ENST00000549578 CHD1O14646 1710 aa35.22■■■■□ 3.23
VPS29-206ENST00000549578 CHMP7Q8WUX9 453 aaPredicted RBP35.21■■■■□ 3.23
VPS29-206ENST00000549578 CSRNP3Q8WYN3 585 aa35.19■■■■□ 3.22
VPS29-206ENST00000549578 CARMIL1Q5VZK9 1371 aa35.19■■■■□ 3.22
VPS29-206ENST00000549578 GRIN2AQ12879 1464 aa35.12■■■■□ 3.21
VPS29-206ENST00000549578 PRXQ9BXM0 1461 aa35.07■■■■□ 3.21
VPS29-206ENST00000549578 RAPGEF2Q9Y4G8 1499 aa35.04■■■■□ 3.2
VPS29-206ENST00000549578 OSCARQ8IYS5 282 aa34.99■■■■□ 3.19
VPS29-206ENST00000549578 CEP170Q5SW79 1584 aa34.94■■■■□ 3.18
VPS29-206ENST00000549578 NUP160Q12769 1436 aa34.92■■■■□ 3.18
VPS29-206ENST00000549578 KIF21BO75037 1637 aa34.91■■■■□ 3.18
VPS29-206ENST00000549578 EHMT2Q96KQ7 1210 aa34.85■■■■□ 3.17
VPS29-206ENST00000549578 CLASP1Q7Z460 1538 aa34.82■■■■□ 3.17
VPS29-206ENST00000549578 GOLGA3Q08378 1498 aa34.76■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms