RNA–Protein interactions for RNA: ENST00000446987.5

DDX56-206, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-206ENST00000446987 NISCHQ9Y2I1 1504 aa29.92■■■□□ 2.38
DDX56-206ENST00000446987 CCDC180Q9P1Z9 1646 aa26.56■■□□□ 1.84
DDX56-206ENST00000446987 ABCC9O60706 1549 aa25.75■■□□□ 1.71
DDX56-206ENST00000446987 ZCCHC6Q5VYS8 1495 aaKnown RBP25■■□□□ 1.59
DDX56-206ENST00000446987 NACADO15069 1562 aa24.86■■□□□ 1.57
DDX56-206ENST00000446987 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
DDX56-206ENST00000446987 MYO15BQ96JP2 1530 aa24.8■■□□□ 1.56
DDX56-206ENST00000446987 DCAF1Q9Y4B6 1507 aa24.77■■□□□ 1.56
DDX56-206ENST00000446987 DCAF8L2P0C7V8 631 aa24.68■■□□□ 1.54
DDX56-206ENST00000446987 UNC13AQ9UPW8 1703 aa24.45■■□□□ 1.5
DDX56-206ENST00000446987 SCRIBQ14160 1630 aa24.23■■□□□ 1.47
DDX56-206ENST00000446987 BICRAQ9NZM4 1560 aa24.21■■□□□ 1.47
DDX56-206ENST00000446987 PABPN1Q86U42 306 aaKnown RBP eCLIP24.03■■□□□ 1.445e-7■■■■□ 20.7
DDX56-206ENST00000446987 SHROOM4Q9ULL8 1493 aa23.86■■□□□ 1.41
DDX56-206ENST00000446987 DNAJC5BQ9UF47 199 aa23.5■■□□□ 1.35
DDX56-206ENST00000446987 EIF4G1Q04637 1599 aaKnown RBP23.49■■□□□ 1.35
DDX56-206ENST00000446987 CC2D2AQ9P2K1 1620 aa23.35■■□□□ 1.33
DDX56-206ENST00000446987 CECR2Q9BXF3 1484 aa23.31■■□□□ 1.32
DDX56-206ENST00000446987 SMARCA4P51532 1647 aa23.21■■□□□ 1.31
DDX56-206ENST00000446987 BAZ1AQ9NRL2 1556 aaPredicted RBP23.15■■□□□ 1.3
DDX56-206ENST00000446987 MROH2BQ7Z745 1585 aa23.09■■□□□ 1.29
DDX56-206ENST00000446987 ATAD2BQ9ULI0 1458 aa22.99■■□□□ 1.27
DDX56-206ENST00000446987 PEG3Q9GZU2 1588 aa22.99■■□□□ 1.27
DDX56-206ENST00000446987 SMARCA2P51531 1590 aa22.95■■□□□ 1.26
DDX56-206ENST00000446987 NCAPD3P42695 1498 aa22.94■■□□□ 1.26
DDX56-206ENST00000446987 HMGXB3Q12766 1538 aa22.89■■□□□ 1.25
DDX56-206ENST00000446987 WIZO95785 1651 aa22.86■■□□□ 1.25
DDX56-206ENST00000446987 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
DDX56-206ENST00000446987 BAZ1BQ9UIG0 1483 aaKnown RBP22.78■■□□□ 1.24
DDX56-206ENST00000446987 TOP2AP11388 1531 aaKnown RBP22.6■■□□□ 1.21
DDX56-206ENST00000446987 NESP48681 1621 aa22.39■■□□□ 1.17
DDX56-206ENST00000446987 LAMC3Q9Y6N6 1575 aa22.32■■□□□ 1.16
DDX56-206ENST00000446987 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
DDX56-206ENST00000446987 SUPT5HO00267 1087 aaKnown RBP22.24■■□□□ 1.15
DDX56-206ENST00000446987 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
DDX56-206ENST00000446987 CFTRP13569 1480 aa22.2■■□□□ 1.14
DDX56-206ENST00000446987 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
DDX56-206ENST00000446987 PELP1Q8IZL8 1130 aaKnown RBP22.16■■□□□ 1.14
DDX56-206ENST00000446987 PRDM2Q13029 1718 aa22.13■■□□□ 1.13
DDX56-206ENST00000446987 ERCC6Q03468 1493 aa22.1■■□□□ 1.13
DDX56-206ENST00000446987 PDS5BQ9NTI5 1447 aa22.07■■□□□ 1.12
DDX56-206ENST00000446987 THOC2Q8NI27 1593 aaKnown RBP22.07■■□□□ 1.12
DDX56-206ENST00000446987 FANCD2Q9BXW9 1451 aa22.02■■□□□ 1.12
DDX56-206ENST00000446987 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
DDX56-206ENST00000446987 MRC2Q9UBG0 1479 aa21.91■■□□□ 1.1
DDX56-206ENST00000446987 WDR62O43379 1518 aa21.89■■□□□ 1.09
DDX56-206ENST00000446987 CUX2O14529 1486 aa21.87■■□□□ 1.09
DDX56-206ENST00000446987 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
DDX56-206ENST00000446987 HRCP23327 699 aa21.75■■□□□ 1.07
DDX56-206ENST00000446987 TOPBP1Q92547 1522 aa21.71■■□□□ 1.07
DDX56-206ENST00000446987 DNMBPQ6XZF7 1577 aa21.71■■□□□ 1.07
DDX56-206ENST00000446987 CUX1P39880 1505 aa21.66■■□□□ 1.06
DDX56-206ENST00000446987 MYT1Q01538 1121 aa21.63■■□□□ 1.05
DDX56-206ENST00000446987 ABCC8Q09428 1581 aa21.62■■□□□ 1.05
DDX56-206ENST00000446987 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
DDX56-206ENST00000446987 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
DDX56-206ENST00000446987 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
DDX56-206ENST00000446987 TARBP1Q13395 1621 aaKnown RBP21.52■■□□□ 1.04
DDX56-206ENST00000446987 FGD5Q6ZNL6 1462 aa21.51■■□□□ 1.03
DDX56-206ENST00000446987 TOP2BQ02880 1626 aa21.5■■□□□ 1.03
DDX56-206ENST00000446987 WRNQ14191 1432 aaPredicted RBP eCLIP21.49■■□□□ 1.03
DDX56-206ENST00000446987 IFT140Q96RY7 1462 aa21.48■■□□□ 1.03
DDX56-206ENST00000446987 ZNF608Q9ULD9 1512 aaPredicted RBP21.44■■□□□ 1.02
DDX56-206ENST00000446987 WDR97A6NE52 1622 aa21.44■■□□□ 1.02
DDX56-206ENST00000446987 RAD54L2Q9Y4B4 1467 aa21.44■■□□□ 1.02
DDX56-206ENST00000446987 EIF4G3O43432 1585 aaKnown RBP21.39■■□□□ 1.01
DDX56-206ENST00000446987 SOGA1O94964 1423 aa21.37■■□□□ 1.01
DDX56-206ENST00000446987 ABCA10Q8WWZ4 1543 aa21.31■■□□□ 1
DDX56-206ENST00000446987 AQRO60306 1485 aaKnown RBP eCLIP21.29■■□□□ 12e-7■■■■□ 22.4
DDX56-206ENST00000446987 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
DDX56-206ENST00000446987 TDRD9Q8NDG6 1382 aaKnown RBP21.25■□□□□ 0.99
DDX56-206ENST00000446987 PBRM1Q86U86 1689 aa21.21■□□□□ 0.99
DDX56-206ENST00000446987 GAPVD1Q14C86 1478 aa21.17■□□□□ 0.98
DDX56-206ENST00000446987 GRIN2BQ13224 1484 aa21.13■□□□□ 0.97
DDX56-206ENST00000446987 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
DDX56-206ENST00000446987 CHD1O14646 1710 aa21.1■□□□□ 0.97
DDX56-206ENST00000446987 MAGI1Q96QZ7 1491 aaPredicted RBP21.08■□□□□ 0.96
DDX56-206ENST00000446987 ADAMTS12P58397 1594 aa21.05■□□□□ 0.96
DDX56-206ENST00000446987 ERICH3Q5RHP9 1530 aa21.05■□□□□ 0.96
DDX56-206ENST00000446987 SYNJ2O15056 1496 aa20.99■□□□□ 0.95
DDX56-206ENST00000446987 KIF27Q86VH2 1401 aa20.98■□□□□ 0.95
DDX56-206ENST00000446987 RUSC2Q8N2Y8 1516 aa20.97■□□□□ 0.95
DDX56-206ENST00000446987 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
DDX56-206ENST00000446987 DNAJC5Q9H3Z4 198 aa20.93■□□□□ 0.94
DDX56-206ENST00000446987 CHIC1Q5VXU3 224 aa20.92■□□□□ 0.94
DDX56-206ENST00000446987 FHAD1B1AJZ9 1412 aa20.92■□□□□ 0.94
DDX56-206ENST00000446987 IGF1RP08069 1367 aa20.92■□□□□ 0.94
DDX56-206ENST00000446987 CUL7Q14999 1698 aa20.91■□□□□ 0.94
DDX56-206ENST00000446987 GRIN2AQ12879 1464 aa20.9■□□□□ 0.94
DDX56-206ENST00000446987 CLASP1Q7Z460 1538 aa20.88■□□□□ 0.93
DDX56-206ENST00000446987 OSCARQ8IYS5 282 aa20.87■□□□□ 0.93
DDX56-206ENST00000446987 FBLN2P98095 1184 aa20.85■□□□□ 0.93
DDX56-206ENST00000446987 CEP170Q5SW79 1584 aa20.85■□□□□ 0.93
DDX56-206ENST00000446987 CHMP7Q8WUX9 453 aaPredicted RBP20.84■□□□□ 0.93
DDX56-206ENST00000446987 NUP160Q12769 1436 aa20.82■□□□□ 0.92
DDX56-206ENST00000446987 PPARGC1BQ86YN6 1023 aaKnown RBP20.79■□□□□ 0.92
DDX56-206ENST00000446987 CARMIL1Q5VZK9 1371 aa20.76■□□□□ 0.91
DDX56-206ENST00000446987 PRXQ9BXM0 1461 aa20.71■□□□□ 0.91
DDX56-206ENST00000446987 RIMBP3CA6NJZ7 1639 aa20.71■□□□□ 0.91
DDX56-206ENST00000446987 RIMBP3BA6NNM3 1639 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms