RNA–Protein interactions for RNA: ENST00000545115.5

DDX11-228, Transcript of DEAD/H-box helicase 11, humanhuman

TSL 5

Gene DDX11, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX11-228ENST00000545115 NISCHQ9Y2I1 1504 aa35.4■■■■□ 3.26
DDX11-228ENST00000545115 CCDC180Q9P1Z9 1646 aa31.76■■■□□ 2.67
DDX11-228ENST00000545115 ABCC9O60706 1549 aa31.71■■■□□ 2.67
DDX11-228ENST00000545115 RB1CC1Q8TDY2 1594 aa30.23■■■□□ 2.43
DDX11-228ENST00000545115 NACADO15069 1562 aa30.03■■■□□ 2.4
DDX11-228ENST00000545115 DCAF8L2P0C7V8 631 aa29.82■■■□□ 2.36
DDX11-228ENST00000545115 DNAJC5BQ9UF47 199 aa29.68■■■□□ 2.34
DDX11-228ENST00000545115 MYO15BQ96JP2 1530 aa29.65■■■□□ 2.34
DDX11-228ENST00000545115 PABPN1Q86U42 306 aaKnown RBP eCLIP29.51■■■□□ 2.31
DDX11-228ENST00000545115 UNC13AQ9UPW8 1703 aa29.48■■■□□ 2.31
DDX11-228ENST00000545115 ZCCHC6Q5VYS8 1495 aaKnown RBP29.36■■■□□ 2.29
DDX11-228ENST00000545115 BICRAQ9NZM4 1560 aa29.31■■■□□ 2.28
DDX11-228ENST00000545115 DCAF1Q9Y4B6 1507 aa29.26■■■□□ 2.27
DDX11-228ENST00000545115 SHROOM4Q9ULL8 1493 aa28.99■■■□□ 2.23
DDX11-228ENST00000545115 SCRIBQ14160 1630 aa28.92■■■□□ 2.22
DDX11-228ENST00000545115 CC2D2AQ9P2K1 1620 aa28.65■■■□□ 2.18
DDX11-228ENST00000545115 EIF4G1Q04637 1599 aaKnown RBP28.61■■■□□ 2.17
DDX11-228ENST00000545115 CECR2Q9BXF3 1484 aa28.58■■■□□ 2.17
DDX11-228ENST00000545115 NCAPD3P42695 1498 aa27.71■■■□□ 2.03
DDX11-228ENST00000545115 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
DDX11-228ENST00000545115 SMARCA4P51532 1647 aa27.61■■■□□ 2.01
DDX11-228ENST00000545115 SMARCA2P51531 1590 aa27.57■■■□□ 2
DDX11-228ENST00000545115 HMGXB3Q12766 1538 aa27.53■■■□□ 2
DDX11-228ENST00000545115 BAZ1AQ9NRL2 1556 aaPredicted RBP27.49■■□□□ 1.99
DDX11-228ENST00000545115 ERCC6Q03468 1493 aa27.41■■□□□ 1.98
DDX11-228ENST00000545115 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
DDX11-228ENST00000545115 CUX2O14529 1486 aa27.36■■□□□ 1.97
DDX11-228ENST00000545115 PEG3Q9GZU2 1588 aa27.35■■□□□ 1.97
DDX11-228ENST00000545115 DNAJC5Q9H3Z4 198 aa27.26■■□□□ 1.95
DDX11-228ENST00000545115 MROH2BQ7Z745 1585 aa27.26■■□□□ 1.95
DDX11-228ENST00000545115 NESP48681 1621 aa27.24■■□□□ 1.95
DDX11-228ENST00000545115 LAMC3Q9Y6N6 1575 aa27.09■■□□□ 1.93
DDX11-228ENST00000545115 THOC2Q8NI27 1593 aaKnown RBP26.99■■□□□ 1.91
DDX11-228ENST00000545115 PDS5BQ9NTI5 1447 aa26.94■■□□□ 1.9
DDX11-228ENST00000545115 WIZO95785 1651 aa26.92■■□□□ 1.9
DDX11-228ENST00000545115 KIF21AQ7Z4S6 1674 aa26.89■■□□□ 1.89
DDX11-228ENST00000545115 CADPSQ9ULU8 1353 aa26.87■■□□□ 1.89
DDX11-228ENST00000545115 RSF1Q96T23 1441 aaPredicted RBP26.72■■□□□ 1.87
DDX11-228ENST00000545115 MRC2Q9UBG0 1479 aa26.7■■□□□ 1.87
DDX11-228ENST00000545115 WDR62O43379 1518 aa26.64■■□□□ 1.85
DDX11-228ENST00000545115 TOP2AP11388 1531 aaKnown RBP26.62■■□□□ 1.85
DDX11-228ENST00000545115 CEP164Q9UPV0 1460 aa26.6■■□□□ 1.85
DDX11-228ENST00000545115 CFTRP13569 1480 aa26.58■■□□□ 1.85
DDX11-228ENST00000545115 FANCD2Q9BXW9 1451 aa26.57■■□□□ 1.84
DDX11-228ENST00000545115 URB2Q14146 1524 aaKnown RBP26.34■■□□□ 1.81
DDX11-228ENST00000545115 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
DDX11-228ENST00000545115 PRDM2Q13029 1718 aa26.29■■□□□ 1.8
DDX11-228ENST00000545115 OSCARQ8IYS5 282 aa26.08■■□□□ 1.77
DDX11-228ENST00000545115 IFT140Q96RY7 1462 aa26.07■■□□□ 1.76
DDX11-228ENST00000545115 TRIM41Q8WV44 630 aa26.07■■□□□ 1.76
DDX11-228ENST00000545115 TOPBP1Q92547 1522 aa26.07■■□□□ 1.76
DDX11-228ENST00000545115 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
DDX11-228ENST00000545115 ZNF608Q9ULD9 1512 aaPredicted RBP26■■□□□ 1.75
DDX11-228ENST00000545115 DNMBPQ6XZF7 1577 aa25.98■■□□□ 1.75
DDX11-228ENST00000545115 EIF4G3O43432 1585 aaKnown RBP25.87■■□□□ 1.73
DDX11-228ENST00000545115 TARBP1Q13395 1621 aaKnown RBP25.82■■□□□ 1.72
DDX11-228ENST00000545115 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
DDX11-228ENST00000545115 AQRO60306 1485 aaKnown RBP eCLIP25.77■■□□□ 1.729e-7■■■■■ 37.6
DDX11-228ENST00000545115 RIMBP3CA6NJZ7 1639 aa25.74■■□□□ 1.71
DDX11-228ENST00000545115 RIMBP3BA6NNM3 1639 aa25.74■■□□□ 1.71
DDX11-228ENST00000545115 RIMBP3Q9UFD9 1639 aa25.74■■□□□ 1.71
DDX11-228ENST00000545115 RAD54L2Q9Y4B4 1467 aa25.69■■□□□ 1.7
DDX11-228ENST00000545115 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
DDX11-228ENST00000545115 SOGA1O94964 1423 aa25.68■■□□□ 1.7
DDX11-228ENST00000545115 CHD1O14646 1710 aa25.65■■□□□ 1.7
DDX11-228ENST00000545115 FGD5Q6ZNL6 1462 aa25.65■■□□□ 1.7
DDX11-228ENST00000545115 CUX1P39880 1505 aa25.62■■□□□ 1.69
DDX11-228ENST00000545115 TDRD9Q8NDG6 1382 aaKnown RBP25.61■■□□□ 1.69
DDX11-228ENST00000545115 WDR97A6NE52 1622 aa25.6■■□□□ 1.69
DDX11-228ENST00000545115 FBLN2P98095 1184 aa25.59■■□□□ 1.69
DDX11-228ENST00000545115 SUPT5HO00267 1087 aaKnown RBP25.53■■□□□ 1.68
DDX11-228ENST00000545115 SNAPC4Q5SXM2 1469 aa25.53■■□□□ 1.68
DDX11-228ENST00000545115 MAGI1Q96QZ7 1491 aaPredicted RBP25.47■■□□□ 1.67
DDX11-228ENST00000545115 GRIN2BQ13224 1484 aa25.47■■□□□ 1.67
DDX11-228ENST00000545115 CYB5RLQ6IPT4 315 aa25.46■■□□□ 1.67
DDX11-228ENST00000545115 ARAP1Q96P48 1450 aa25.42■■□□□ 1.66
DDX11-228ENST00000545115 CHMP7Q8WUX9 453 aaPredicted RBP25.42■■□□□ 1.66
DDX11-228ENST00000545115 SYNJ2O15056 1496 aa25.39■■□□□ 1.65
DDX11-228ENST00000545115 SYNJ1O43426 1573 aa25.39■■□□□ 1.65
DDX11-228ENST00000545115 CLASP1Q7Z460 1538 aa25.38■■□□□ 1.65
DDX11-228ENST00000545115 GAPVD1Q14C86 1478 aa25.38■■□□□ 1.65
DDX11-228ENST00000545115 ABCA10Q8WWZ4 1543 aa25.37■■□□□ 1.65
DDX11-228ENST00000545115 PBRM1Q86U86 1689 aa25.35■■□□□ 1.65
DDX11-228ENST00000545115 ABCA5Q8WWZ7 1642 aa25.32■■□□□ 1.64
DDX11-228ENST00000545115 WRNQ14191 1432 aaPredicted RBP eCLIP25.28■■□□□ 1.64
DDX11-228ENST00000545115 TOP2BQ02880 1626 aa25.23■■□□□ 1.63
DDX11-228ENST00000545115 BIVM-ERCC5R4GMW8 1640 aa25.22■■□□□ 1.63
DDX11-228ENST00000545115 TRHP20396 242 aaPredicted RBP25.17■■□□□ 1.62
DDX11-228ENST00000545115 GRIN2AQ12879 1464 aa25.14■■□□□ 1.61
DDX11-228ENST00000545115 ADAMTS12P58397 1594 aa25.13■■□□□ 1.61
DDX11-228ENST00000545115 FHAD1B1AJZ9 1412 aa25.06■■□□□ 1.6
DDX11-228ENST00000545115 NUP160Q12769 1436 aa25.05■■□□□ 1.6
DDX11-228ENST00000545115 ERICH3Q5RHP9 1530 aa25.05■■□□□ 1.6
DDX11-228ENST00000545115 CEP170Q5SW79 1584 aa25.04■■□□□ 1.6
DDX11-228ENST00000545115 ERCC6L2Q5T890 1561 aa24.97■■□□□ 1.59
DDX11-228ENST00000545115 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
DDX11-228ENST00000545115 PRG4Q92954 1404 aaPredicted RBP24.8■■□□□ 1.56
DDX11-228ENST00000545115 RUSC2Q8N2Y8 1516 aa24.77■■□□□ 1.56
DDX11-228ENST00000545115 JPH4Q96JJ6 628 aa24.77■■□□□ 1.56
DDX11-228ENST00000545115 KIF27Q86VH2 1401 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms