RNA–Protein interactions for RNA: ENST00000450501.5

COPS7B-215, Transcript of COP9 signalosome subunit 7B, human

TSL 4

Gene COPS7B, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-215	ENST00000450501	NISCH	Q9Y2I1	1504 aa		45.35	■■■■■ 4.85
COPS7B-215	ENST00000450501	CCDC180	Q9P1Z9	1646 aa		40.31	■■■■■ 4.04
COPS7B-215	ENST00000450501	ABCC9	O60706	1549 aa		39.27	■■■■□ 3.88
COPS7B-215	ENST00000450501	RB1CC1	Q8TDY2	1594 aa		37.88	■■■■□ 3.65
COPS7B-215	ENST00000450501	NACAD	O15069	1562 aa		37.85	■■■■□ 3.65
COPS7B-215	ENST00000450501	DCAF8L2	P0C7V8	631 aa		37.85	■■■■□ 3.65
COPS7B-215	ENST00000450501	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.8	■■■■□ 3.64
COPS7B-215	ENST00000450501	MYO15B	Q96JP2	1530 aa		37.67	■■■■□ 3.62
COPS7B-215	ENST00000450501	DCAF1	Q9Y4B6	1507 aa		37.55	■■■■□ 3.6
COPS7B-215	ENST00000450501	UNC13A	Q9UPW8	1703 aa		37.02	■■■■□ 3.52
COPS7B-215	ENST00000450501	SCRIB	Q14160	1630 aa		36.75	■■■■□ 3.47
COPS7B-215	ENST00000450501	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.7	■■■■□ 3.47
COPS7B-215	ENST00000450501	BICRA	Q9NZM4	1560 aa		36.68	■■■■□ 3.46
COPS7B-215	ENST00000450501	SHROOM4	Q9ULL8	1493 aa		36.36	■■■■□ 3.41
COPS7B-215	ENST00000450501	DNAJC5B	Q9UF47	199 aa		35.9	■■■■□ 3.34
COPS7B-215	ENST00000450501	EIF4G1	Q04637	1599 aa	Known RBP	35.72	■■■■□ 3.31
COPS7B-215	ENST00000450501	AEBP2	Q6ZN18	517 aa	Predicted RBP	35.57	■■■■□ 3.28
COPS7B-215	ENST00000450501	CC2D2A	Q9P2K1	1620 aa		35.55	■■■■□ 3.28
COPS7B-215	ENST00000450501	CECR2	Q9BXF3	1484 aa		35.29	■■■■□ 3.24
COPS7B-215	ENST00000450501	SMARCA4	P51532	1647 aa		35.17	■■■■□ 3.22
COPS7B-215	ENST00000450501	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.17	■■■■□ 3.22
COPS7B-215	ENST00000450501	SMARCA2	P51531	1590 aa		34.94	■■■■□ 3.18
COPS7B-215	ENST00000450501	MROH2B	Q7Z745	1585 aa		34.93	■■■■□ 3.18
COPS7B-215	ENST00000450501	ATAD2B	Q9ULI0	1458 aa		34.93	■■■■□ 3.18
COPS7B-215	ENST00000450501	NCAPD3	P42695	1498 aa		34.9	■■■■□ 3.18
COPS7B-215	ENST00000450501	PEG3	Q9GZU2	1588 aa		34.83	■■■■□ 3.17
COPS7B-215	ENST00000450501	HMGXB3	Q12766	1538 aa		34.76	■■■■□ 3.16
COPS7B-215	ENST00000450501	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.68	■■■■□ 3.14
COPS7B-215	ENST00000450501	WIZ	O95785	1651 aa		34.59	■■■■□ 3.13
COPS7B-215	ENST00000450501	RSF1	Q96T23	1441 aa	Predicted RBP	34.58	■■■■□ 3.13
COPS7B-215	ENST00000450501	TOP2A	P11388	1531 aa	Known RBP	34.23	■■■■□ 3.07
COPS7B-215	ENST00000450501	NES	P48681	1621 aa		34.01	■■■■□ 3.03
COPS7B-215	ENST00000450501	LAMC3	Q9Y6N6	1575 aa		33.99	■■■■□ 3.03
COPS7B-215	ENST00000450501	CADPS	Q9ULU8	1353 aa		33.9	■■■■□ 3.02
COPS7B-215	ENST00000450501	ERCC6	Q03468	1493 aa		33.88	■■■■□ 3.01
COPS7B-215	ENST00000450501	CCDC88B	A6NC98	1476 aa		33.82	■■■■□ 3
COPS7B-215	ENST00000450501	SUPT5H	O00267	1087 aa	Known RBP	33.81	■■■■□ 3
COPS7B-215	ENST00000450501	PDS5B	Q9NTI5	1447 aa		33.77	■■■■□ 3
COPS7B-215	ENST00000450501	CHIC1	Q5VXU3	224 aa		33.75	■■■□□ 2.99
COPS7B-215	ENST00000450501	CFTR	P13569	1480 aa		33.72	■■■□□ 2.99
COPS7B-215	ENST00000450501	KIF21A	Q7Z4S6	1674 aa		33.64	■■■□□ 2.98
COPS7B-215	ENST00000450501	PRDM2	Q13029	1718 aa		33.53	■■■□□ 2.96
COPS7B-215	ENST00000450501	FANCD2	Q9BXW9	1451 aa		33.5	■■■□□ 2.95
COPS7B-215	ENST00000450501	THOC2	Q8NI27	1593 aa	Known RBP	33.49	■■■□□ 2.95
COPS7B-215	ENST00000450501	CUX2	O14529	1486 aa		33.47	■■■□□ 2.95
COPS7B-215	ENST00000450501	CEP164	Q9UPV0	1460 aa		33.47	■■■□□ 2.95
COPS7B-215	ENST00000450501	MRC2	Q9UBG0	1479 aa		33.38	■■■□□ 2.93
COPS7B-215	ENST00000450501	WDR62	O43379	1518 aa		33.27	■■■□□ 2.92
COPS7B-215	ENST00000450501	URB2	Q14146	1524 aa	Known RBP	33.15	■■■□□ 2.9
COPS7B-215	ENST00000450501	ABCC8	Q09428	1581 aa		33.03	■■■□□ 2.88
COPS7B-215	ENST00000450501	TOPBP1	Q92547	1522 aa		32.99	■■■□□ 2.87
COPS7B-215	ENST00000450501	DNMBP	Q6XZF7	1577 aa		32.97	■■■□□ 2.87
COPS7B-215	ENST00000450501	CUX1	P39880	1505 aa		32.77	■■■□□ 2.84
COPS7B-215	ENST00000450501	IFT140	Q96RY7	1462 aa		32.76	■■■□□ 2.84
COPS7B-215	ENST00000450501	POLA1	P09884	1462 aa	Predicted RBP	32.71	■■■□□ 2.83
COPS7B-215	ENST00000450501	FGD5	Q6ZNL6	1462 aa		32.66	■■■□□ 2.82
COPS7B-215	ENST00000450501	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.63	■■■□□ 2.81
COPS7B-215	ENST00000450501	TARBP1	Q13395	1621 aa	Known RBP	32.62	■■■□□ 2.81
COPS7B-215	ENST00000450501	SOGA1	O94964	1423 aa		32.59	■■■□□ 2.81
COPS7B-215	ENST00000450501	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.56	■■■□□ 2.8
COPS7B-215	ENST00000450501	TOP2B	Q02880	1626 aa		32.55	■■■□□ 2.8
COPS7B-215	ENST00000450501	RAD54L2	Q9Y4B4	1467 aa		32.55	■■■□□ 2.8
COPS7B-215	ENST00000450501	BIVM-ERCC5	R4GMW8	1640 aa		32.55	■■■□□ 2.8
COPS7B-215	ENST00000450501	SYNJ1	O43426	1573 aa		32.53	■■■□□ 2.8
COPS7B-215	ENST00000450501	EIF4G3	O43432	1585 aa	Known RBP	32.48	■■■□□ 2.79
COPS7B-215	ENST00000450501	AQR	O60306	1485 aa	Known RBP eCLIP	32.42	■■■□□ 2.78
COPS7B-215	ENST00000450501	WDR97	A6NE52	1622 aa		32.4	■■■□□ 2.78
COPS7B-215	ENST00000450501	TDRD9	Q8NDG6	1382 aa	Known RBP	32.37	■■■□□ 2.77
COPS7B-215	ENST00000450501	ABCA10	Q8WWZ4	1543 aa		32.36	■■■□□ 2.77
COPS7B-215	ENST00000450501	DNAJC5	Q9H3Z4	198 aa		32.28	■■■□□ 2.76
COPS7B-215	ENST00000450501	GAPVD1	Q14C86	1478 aa		32.23	■■■□□ 2.75
COPS7B-215	ENST00000450501	ABCA5	Q8WWZ7	1642 aa		32.21	■■■□□ 2.75
COPS7B-215	ENST00000450501	GRIN2B	Q13224	1484 aa		32.2	■■■□□ 2.75
COPS7B-215	ENST00000450501	PBRM1	Q86U86	1689 aa		32.17	■■■□□ 2.74
COPS7B-215	ENST00000450501	SNAPC4	Q5SXM2	1469 aa		32.12	■■■□□ 2.73
COPS7B-215	ENST00000450501	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.11	■■■□□ 2.73
COPS7B-215	ENST00000450501	OSCAR	Q8IYS5	282 aa		32.11	■■■□□ 2.73
COPS7B-215	ENST00000450501	CHD1	O14646	1710 aa		32.06	■■■□□ 2.72
COPS7B-215	ENST00000450501	FBLN2	P98095	1184 aa		32.02	■■■□□ 2.72
COPS7B-215	ENST00000450501	ERICH3	Q5RHP9	1530 aa		31.98	■■■□□ 2.71
COPS7B-215	ENST00000450501	SYNJ2	O15056	1496 aa		31.97	■■■□□ 2.71
COPS7B-215	ENST00000450501	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.96	■■■□□ 2.71
COPS7B-215	ENST00000450501	KIF27	Q86VH2	1401 aa		31.95	■■■□□ 2.71
COPS7B-215	ENST00000450501	TRIM41	Q8WV44	630 aa		31.95	■■■□□ 2.71
COPS7B-215	ENST00000450501	ADAMTS12	P58397	1594 aa		31.9	■■■□□ 2.7
COPS7B-215	ENST00000450501	FHAD1	B1AJZ9	1412 aa		31.85	■■■□□ 2.69
COPS7B-215	ENST00000450501	GRIN2A	Q12879	1464 aa		31.78	■■■□□ 2.68
COPS7B-215	ENST00000450501	IGF1R	P08069	1367 aa		31.78	■■■□□ 2.68
COPS7B-215	ENST00000450501	CUL7	Q14999	1698 aa		31.73	■■■□□ 2.67
COPS7B-215	ENST00000450501	CLASP1	Q7Z460	1538 aa		31.7	■■■□□ 2.66
COPS7B-215	ENST00000450501	RUSC2	Q8N2Y8	1516 aa		31.65	■■■□□ 2.66
COPS7B-215	ENST00000450501	NUP160	Q12769	1436 aa		31.63	■■■□□ 2.65
COPS7B-215	ENST00000450501	CARMIL1	Q5VZK9	1371 aa		31.61	■■■□□ 2.65
COPS7B-215	ENST00000450501	CEP170	Q5SW79	1584 aa		31.6	■■■□□ 2.65
COPS7B-215	ENST00000450501	ARHGEF11	O15085	1522 aa		31.57	■■■□□ 2.64
COPS7B-215	ENST00000450501	RIMBP3C	A6NJZ7	1639 aa		31.57	■■■□□ 2.64
COPS7B-215	ENST00000450501	RIMBP3B	A6NNM3	1639 aa		31.57	■■■□□ 2.64
COPS7B-215	ENST00000450501	RIMBP3	Q9UFD9	1639 aa		31.57	■■■□□ 2.64
COPS7B-215	ENST00000450501	RAPGEF2	Q9Y4G8	1499 aa		31.44	■■■□□ 2.62
COPS7B-215	ENST00000450501	EEA1	Q15075	1411 aa		31.43	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms