RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 NISCHQ9Y2I1 1504 aa28.93■■■□□ 2.22
DDX56-204ENST00000431640 CCDC180Q9P1Z9 1646 aa25.47■■□□□ 1.67
DDX56-204ENST00000431640 ABCC9O60706 1549 aa24.4■■□□□ 1.5
DDX56-204ENST00000431640 ZCCHC6Q5VYS8 1495 aaKnown RBP24.27■■□□□ 1.48
DDX56-204ENST00000431640 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
DDX56-204ENST00000431640 DCAF8L2P0C7V8 631 aa23.79■■□□□ 1.4
DDX56-204ENST00000431640 MYO15BQ96JP2 1530 aa23.78■■□□□ 1.4
DDX56-204ENST00000431640 NACADO15069 1562 aa23.74■■□□□ 1.39
DDX56-204ENST00000431640 RB1CC1Q8TDY2 1594 aa23.64■■□□□ 1.37
DDX56-204ENST00000431640 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
DDX56-204ENST00000431640 UNC13AQ9UPW8 1703 aa23.3■■□□□ 1.32
DDX56-204ENST00000431640 SHROOM4Q9ULL8 1493 aa23.25■■□□□ 1.31
DDX56-204ENST00000431640 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
DDX56-204ENST00000431640 PABPN1Q86U42 306 aaKnown RBP eCLIP22.85■■□□□ 1.256e-7■■■■□ 19.8
DDX56-204ENST00000431640 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
DDX56-204ENST00000431640 MROH2BQ7Z745 1585 aa22.37■■□□□ 1.17
DDX56-204ENST00000431640 SMARCA4P51532 1647 aa22.37■■□□□ 1.17
DDX56-204ENST00000431640 SUPT5HO00267 1087 aaKnown RBP22.36■■□□□ 1.17
DDX56-204ENST00000431640 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
DDX56-204ENST00000431640 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.17
DDX56-204ENST00000431640 RSF1Q96T23 1441 aaPredicted RBP22.27■■□□□ 1.15
DDX56-204ENST00000431640 WIZO95785 1651 aa22.18■■□□□ 1.14
DDX56-204ENST00000431640 PEG3Q9GZU2 1588 aa22.12■■□□□ 1.13
DDX56-204ENST00000431640 CC2D2AQ9P2K1 1620 aa22.11■■□□□ 1.13
DDX56-204ENST00000431640 ATAD2BQ9ULI0 1458 aa22.06■■□□□ 1.12
DDX56-204ENST00000431640 SMARCA2P51531 1590 aa22■■□□□ 1.11
DDX56-204ENST00000431640 TOP2AP11388 1531 aaKnown RBP21.92■■□□□ 1.1
DDX56-204ENST00000431640 NCAPD3P42695 1498 aa21.91■■□□□ 1.1
DDX56-204ENST00000431640 DNAJC5BQ9UF47 199 aa21.91■■□□□ 1.1
DDX56-204ENST00000431640 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
DDX56-204ENST00000431640 BAZ1BQ9UIG0 1483 aaKnown RBP21.87■■□□□ 1.09
DDX56-204ENST00000431640 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
DDX56-204ENST00000431640 CCDC88BA6NC98 1476 aa21.64■■□□□ 1.06
DDX56-204ENST00000431640 NESP48681 1621 aa21.34■■□□□ 1.01
DDX56-204ENST00000431640 CFTRP13569 1480 aa21.33■■□□□ 1
DDX56-204ENST00000431640 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
DDX56-204ENST00000431640 PRDM2Q13029 1718 aa21.28■■□□□ 1
DDX56-204ENST00000431640 LAMC3Q9Y6N6 1575 aa21.25■□□□□ 0.99
DDX56-204ENST00000431640 KIF21AQ7Z4S6 1674 aa21.12■□□□□ 0.97
DDX56-204ENST00000431640 ABCC8Q09428 1581 aa21.11■□□□□ 0.97
DDX56-204ENST00000431640 FANCD2Q9BXW9 1451 aa21.09■□□□□ 0.97
DDX56-204ENST00000431640 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
DDX56-204ENST00000431640 PDS5BQ9NTI5 1447 aa21.01■□□□□ 0.95
DDX56-204ENST00000431640 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
DDX56-204ENST00000431640 SYNJ1O43426 1573 aa20.98■□□□□ 0.95
DDX56-204ENST00000431640 CUX1P39880 1505 aa20.95■□□□□ 0.94
DDX56-204ENST00000431640 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
DDX56-204ENST00000431640 URB2Q14146 1524 aaKnown RBP20.91■□□□□ 0.94
DDX56-204ENST00000431640 THOC2Q8NI27 1593 aaKnown RBP20.91■□□□□ 0.94
DDX56-204ENST00000431640 BIVM-ERCC5R4GMW8 1640 aa20.9■□□□□ 0.94
DDX56-204ENST00000431640 ERCC6Q03468 1493 aa20.88■□□□□ 0.93
DDX56-204ENST00000431640 TOP2BQ02880 1626 aa20.88■□□□□ 0.93
DDX56-204ENST00000431640 DNMBPQ6XZF7 1577 aa20.86■□□□□ 0.93
DDX56-204ENST00000431640 TOPBP1Q92547 1522 aa20.85■□□□□ 0.93
DDX56-204ENST00000431640 MRC2Q9UBG0 1479 aa20.85■□□□□ 0.93
DDX56-204ENST00000431640 LOC105371045A0A1W2PR82 267 aa20.84■□□□□ 0.93
DDX56-204ENST00000431640 WDR62O43379 1518 aa20.81■□□□□ 0.92
DDX56-204ENST00000431640 FGD5Q6ZNL6 1462 aa20.75■□□□□ 0.91
DDX56-204ENST00000431640 POLA1P09884 1462 aaPredicted RBP20.72■□□□□ 0.91
DDX56-204ENST00000431640 CUX2O14529 1486 aa20.66■□□□□ 0.9
DDX56-204ENST00000431640 WDR97A6NE52 1622 aa20.64■□□□□ 0.9
DDX56-204ENST00000431640 RAD54L2Q9Y4B4 1467 aa20.64■□□□□ 0.9
DDX56-204ENST00000431640 TARBP1Q13395 1621 aaKnown RBP20.62■□□□□ 0.89
DDX56-204ENST00000431640 FAM9AQ8IZU1 332 aaPredicted RBP20.6■□□□□ 0.89
DDX56-204ENST00000431640 SOGA1O94964 1423 aa20.58■□□□□ 0.88
DDX56-204ENST00000431640 RUSC2Q8N2Y8 1516 aa20.57■□□□□ 0.88
DDX56-204ENST00000431640 ABCA10Q8WWZ4 1543 aa20.55■□□□□ 0.88
DDX56-204ENST00000431640 IFT140Q96RY7 1462 aa20.5■□□□□ 0.87
DDX56-204ENST00000431640 ABCA5Q8WWZ7 1642 aa20.49■□□□□ 0.87
DDX56-204ENST00000431640 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
DDX56-204ENST00000431640 EIF4G3O43432 1585 aaKnown RBP20.43■□□□□ 0.86
DDX56-204ENST00000431640 EEA1Q15075 1411 aa20.43■□□□□ 0.86
DDX56-204ENST00000431640 PCGF6Q9BYE7 350 aa20.42■□□□□ 0.86
DDX56-204ENST00000431640 TDRD9Q8NDG6 1382 aaKnown RBP20.41■□□□□ 0.86
DDX56-204ENST00000431640 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
DDX56-204ENST00000431640 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.852e-7■■■■□ 22.4
DDX56-204ENST00000431640 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
DDX56-204ENST00000431640 TRIM26Q12899 539 aaPredicted RBP20.35■□□□□ 0.85
DDX56-204ENST00000431640 GAPVD1Q14C86 1478 aa20.35■□□□□ 0.85
DDX56-204ENST00000431640 IGF1RP08069 1367 aa20.29■□□□□ 0.84
DDX56-204ENST00000431640 ERICH3Q5RHP9 1530 aa20.28■□□□□ 0.84
DDX56-204ENST00000431640 CSRNP3Q8WYN3 585 aa20.28■□□□□ 0.84
DDX56-204ENST00000431640 GRIN2BQ13224 1484 aa20.26■□□□□ 0.83
DDX56-204ENST00000431640 EHMT2Q96KQ7 1210 aa20.25■□□□□ 0.83
DDX56-204ENST00000431640 ADAMTS12P58397 1594 aa20.24■□□□□ 0.83
DDX56-204ENST00000431640 PRXQ9BXM0 1461 aa20.24■□□□□ 0.83
DDX56-204ENST00000431640 KIF21BO75037 1637 aa20.23■□□□□ 0.83
DDX56-204ENST00000431640 HRCP23327 699 aa20.23■□□□□ 0.83
DDX56-204ENST00000431640 CUL7Q14999 1698 aa20.23■□□□□ 0.83
DDX56-204ENST00000431640 SNAPC4Q5SXM2 1469 aa20.22■□□□□ 0.83
DDX56-204ENST00000431640 RAPGEF2Q9Y4G8 1499 aa20.19■□□□□ 0.82
DDX56-204ENST00000431640 TNIKQ9UKE5 1360 aa20.18■□□□□ 0.82
DDX56-204ENST00000431640 CARMIL1Q5VZK9 1371 aa20.15■□□□□ 0.82
DDX56-204ENST00000431640 MAGI1Q96QZ7 1491 aaPredicted RBP20.15■□□□□ 0.82
DDX56-204ENST00000431640 GOLGA3Q08378 1498 aa20.12■□□□□ 0.81
DDX56-204ENST00000431640 FHAD1B1AJZ9 1412 aa20.11■□□□□ 0.81
DDX56-204ENST00000431640 CHD1O14646 1710 aa20.07■□□□□ 0.8
DDX56-204ENST00000431640 SYNJ2O15056 1496 aa20.07■□□□□ 0.8
DDX56-204ENST00000431640 UBTFP17480 764 aaKnown RBP20.07■□□□□ 0.8
DDX56-204ENST00000431640 CEP162Q5TB80 1403 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms