RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 NISCHQ9Y2I1 1504 aa31.58■■■□□ 2.65
DDX56-201ENST00000258772 CCDC180Q9P1Z9 1646 aa26.85■■□□□ 1.89
DDX56-201ENST00000258772 SHROOM4Q9ULL8 1493 aa26.85■■□□□ 1.89
DDX56-201ENST00000258772 ZCCHC6Q5VYS8 1495 aaKnown RBP26.71■■□□□ 1.87
DDX56-201ENST00000258772 SUPT5HO00267 1087 aaKnown RBP26.38■■□□□ 1.81
DDX56-201ENST00000258772 DCAF8L2P0C7V8 631 aa26.08■■□□□ 1.77
DDX56-201ENST00000258772 DCAF1Q9Y4B6 1507 aa25.95■■□□□ 1.74
DDX56-201ENST00000258772 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
DDX56-201ENST00000258772 MYO15BQ96JP2 1530 aa25.6■■□□□ 1.69
DDX56-201ENST00000258772 ABCC9O60706 1549 aa25.2■■□□□ 1.62
DDX56-201ENST00000258772 SCRIBQ14160 1630 aa25.1■■□□□ 1.61
DDX56-201ENST00000258772 HRCP23327 699 aa25.01■■□□□ 1.59
DDX56-201ENST00000258772 RSF1Q96T23 1441 aaPredicted RBP24.99■■□□□ 1.59
DDX56-201ENST00000258772 PCGF6Q9BYE7 350 aa24.94■■□□□ 1.58
DDX56-201ENST00000258772 LOC105371045A0A1W2PR82 267 aa24.94■■□□□ 1.58
DDX56-201ENST00000258772 NACADO15069 1562 aa24.81■■□□□ 1.56
DDX56-201ENST00000258772 RB1CC1Q8TDY2 1594 aa24.74■■□□□ 1.55
DDX56-201ENST00000258772 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
DDX56-201ENST00000258772 CECR2Q9BXF3 1484 aa24.6■■□□□ 1.53
DDX56-201ENST00000258772 MROH2BQ7Z745 1585 aa24.52■■□□□ 1.52
DDX56-201ENST00000258772 TRIM26Q12899 539 aaPredicted RBP24.51■■□□□ 1.51
DDX56-201ENST00000258772 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
DDX56-201ENST00000258772 WIZO95785 1651 aa24.4■■□□□ 1.5
DDX56-201ENST00000258772 FAM9AQ8IZU1 332 aaPredicted RBP24.35■■□□□ 1.49
DDX56-201ENST00000258772 BAZ1AQ9NRL2 1556 aaPredicted RBP24.27■■□□□ 1.48
DDX56-201ENST00000258772 EIF4G1Q04637 1599 aaKnown RBP24.1■■□□□ 1.45
DDX56-201ENST00000258772 EHMT2Q96KQ7 1210 aa24.1■■□□□ 1.45
DDX56-201ENST00000258772 UNC13AQ9UPW8 1703 aa24.04■■□□□ 1.44
DDX56-201ENST00000258772 SMARCA4P51532 1647 aa24.03■■□□□ 1.44
DDX56-201ENST00000258772 TOP2AP11388 1531 aaKnown RBP24.03■■□□□ 1.44
DDX56-201ENST00000258772 ZEB1P37275 1124 aaPredicted RBP24.01■■□□□ 1.43
DDX56-201ENST00000258772 CCDC88BA6NC98 1476 aa23.93■■□□□ 1.42
DDX56-201ENST00000258772 SMARCA2P51531 1590 aa23.9■■□□□ 1.42
DDX56-201ENST00000258772 ABCC8Q09428 1581 aa23.85■■□□□ 1.41
DDX56-201ENST00000258772 BICRAQ9NZM4 1560 aa23.71■■□□□ 1.39
DDX56-201ENST00000258772 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.385e-7■■■■□ 20.7
DDX56-201ENST00000258772 SOGA1O94964 1423 aa23.65■■□□□ 1.38
DDX56-201ENST00000258772 PEG3Q9GZU2 1588 aa23.6■■□□□ 1.37
DDX56-201ENST00000258772 WRNQ14191 1432 aaPredicted RBP eCLIP23.6■■□□□ 1.37
DDX56-201ENST00000258772 EEA1Q15075 1411 aa23.59■■□□□ 1.37
DDX56-201ENST00000258772 CEP162Q5TB80 1403 aa23.57■■□□□ 1.36
DDX56-201ENST00000258772 TNIKQ9UKE5 1360 aa23.56■■□□□ 1.36
DDX56-201ENST00000258772 CSRNP3Q8WYN3 585 aa23.55■■□□□ 1.36
DDX56-201ENST00000258772 RUSC2Q8N2Y8 1516 aa23.52■■□□□ 1.36
DDX56-201ENST00000258772 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.47■■□□□ 1.35
DDX56-201ENST00000258772 UBTFP17480 764 aaKnown RBP23.43■■□□□ 1.34
DDX56-201ENST00000258772 CCER1Q8TC90 406 aaPredicted RBP23.42■■□□□ 1.34
DDX56-201ENST00000258772 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
DDX56-201ENST00000258772 GOLGA3Q08378 1498 aa23.4■■□□□ 1.34
DDX56-201ENST00000258772 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
DDX56-201ENST00000258772 TTBK1Q5TCY1 1321 aaPredicted RBP23.33■■□□□ 1.33
DDX56-201ENST00000258772 BAZ1BQ9UIG0 1483 aaKnown RBP23.33■■□□□ 1.32
DDX56-201ENST00000258772 CEP164Q9UPV0 1460 aa23.27■■□□□ 1.31
DDX56-201ENST00000258772 KIF21BO75037 1637 aa23.25■■□□□ 1.31
DDX56-201ENST00000258772 CLIP1P30622 1438 aa23.12■■□□□ 1.29
DDX56-201ENST00000258772 TOP2BQ02880 1626 aa23.08■■□□□ 1.29
DDX56-201ENST00000258772 RAPGEF2Q9Y4G8 1499 aa23.07■■□□□ 1.28
DDX56-201ENST00000258772 VPS8Q8N3P4 1428 aa23.05■■□□□ 1.28
DDX56-201ENST00000258772 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
DDX56-201ENST00000258772 BIVM-ERCC5R4GMW8 1640 aa23.01■■□□□ 1.27
DDX56-201ENST00000258772 DIEXFQ68CQ4 756 aaKnown RBP23■■□□□ 1.27
DDX56-201ENST00000258772 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
DDX56-201ENST00000258772 HMGXB3Q12766 1538 aa22.95■■□□□ 1.26
DDX56-201ENST00000258772 APLP2Q06481 763 aa22.93■■□□□ 1.26
DDX56-201ENST00000258772 HNRNPUL2Q1KMD3 747 aaKnown RBP22.92■■□□□ 1.26
DDX56-201ENST00000258772 RANGAP1P46060 587 aaPredicted RBP22.88■■□□□ 1.25
DDX56-201ENST00000258772 ERICH3Q5RHP9 1530 aa22.88■■□□□ 1.25
DDX56-201ENST00000258772 PRXQ9BXM0 1461 aa22.87■■□□□ 1.25
DDX56-201ENST00000258772 ACIN1Q9UKV3 1341 aaKnown RBP22.84■■□□□ 1.25
DDX56-201ENST00000258772 ZNF316A6NFI3 1004 aaPredicted RBP22.84■■□□□ 1.25
DDX56-201ENST00000258772 CUX1P39880 1505 aa22.83■■□□□ 1.24
DDX56-201ENST00000258772 NEUROD1Q13562 356 aa22.79■■□□□ 1.24
DDX56-201ENST00000258772 CFTRP13569 1480 aa22.78■■□□□ 1.24
DDX56-201ENST00000258772 KIF27Q86VH2 1401 aa22.75■■□□□ 1.23
DDX56-201ENST00000258772 ARAP1Q96P48 1450 aa22.74■■□□□ 1.23
DDX56-201ENST00000258772 CENPBP07199 599 aaPredicted RBP22.71■■□□□ 1.23
DDX56-201ENST00000258772 PELP1Q8IZL8 1130 aaKnown RBP22.64■■□□□ 1.22
DDX56-201ENST00000258772 KANK4Q5T7N3 995 aaPredicted RBP22.63■■□□□ 1.21
DDX56-201ENST00000258772 PRDM2Q13029 1718 aa22.63■■□□□ 1.21
DDX56-201ENST00000258772 CLSPNQ9HAW4 1339 aa22.56■■□□□ 1.2
DDX56-201ENST00000258772 GTF3C3Q9Y5Q9 886 aa22.56■■□□□ 1.2
DDX56-201ENST00000258772 ARHGAP35Q9NRY4 1499 aa22.55■■□□□ 1.2
DDX56-201ENST00000258772 RRBP1Q9P2E9 1410 aaKnown RBP22.53■■□□□ 1.2
DDX56-201ENST00000258772 DHX57Q6P158 1386 aaKnown RBP22.52■■□□□ 1.2
DDX56-201ENST00000258772 CADPSQ9ULU8 1353 aa22.51■■□□□ 1.19
DDX56-201ENST00000258772 IGF1RP08069 1367 aa22.51■■□□□ 1.19
DDX56-201ENST00000258772 CUX2O14529 1486 aa22.5■■□□□ 1.19
DDX56-201ENST00000258772 MIER1Q8N108 512 aa22.49■■□□□ 1.19
DDX56-201ENST00000258772 CCNB3Q8WWL7 1395 aa22.41■■□□□ 1.18
DDX56-201ENST00000258772 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
DDX56-201ENST00000258772 CARMIL1Q5VZK9 1371 aa22.4■■□□□ 1.18
DDX56-201ENST00000258772 YTHDC1Q96MU7 727 aaKnown RBP22.39■■□□□ 1.17
DDX56-201ENST00000258772 MAP3K1Q13233 1512 aa22.34■■□□□ 1.17
DDX56-201ENST00000258772 CC2D2AQ9P2K1 1620 aa22.32■■□□□ 1.16
DDX56-201ENST00000258772 TIAM1Q13009 1591 aa22.32■■□□□ 1.16
DDX56-201ENST00000258772 FANCD2Q9BXW9 1451 aa22.27■■□□□ 1.16
DDX56-201ENST00000258772 ITGAEP38570 1179 aa22.27■■□□□ 1.16
DDX56-201ENST00000258772 LRRC9Q6ZRR7 1453 aa22.24■■□□□ 1.15
DDX56-201ENST00000258772 FHAD1B1AJZ9 1412 aa22.22■■□□□ 1.15
DDX56-201ENST00000258772 RAB3GAP2Q9H2M9 1393 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms